Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 AC022336.1-201ENST00000475510 337 ntBASIC5.19□□□□□ -1.58
CCDC3Q9BQI4 AC090114.3-201ENST00000479267 829 ntBASIC5.19□□□□□ -1.58
CCDC3Q9BQI4 AC012629.1-201ENST00000503953 342 ntTSL 3 BASIC5.19□□□□□ -1.58
CCDC3Q9BQI4 AC110775.1-201ENST00000513721 462 ntBASIC5.19□□□□□ -1.58
CCDC3Q9BQI4 E2F5-204ENST00000517476 1094 ntTSL 2 BASIC5.19□□□□□ -1.58
CCDC3Q9BQI4 WDYHV1-203ENST00000518125 880 ntTSL 2 BASIC5.19□□□□□ -1.58
CCDC3Q9BQI4 SEC11B-201ENST00000518383 499 ntBASIC5.19□□□□□ -1.58
CCDC3Q9BQI4 OR4A17P-201ENST00000526032 904 ntBASIC5.19□□□□□ -1.58
CCDC3Q9BQI4 AP001922.4-201ENST00000526967 290 ntBASIC5.19□□□□□ -1.58
CCDC3Q9BQI4 MS4A6A-210ENST00000529054 1160 ntTSL 5 BASIC5.19□□□□□ -1.58
CCDC3Q9BQI4 RGS5-208ENST00000530507 851 ntAPPRIS ALT1 TSL 3 BASIC5.19□□□□□ -1.58
CCDC3Q9BQI4 AC021393.1-201ENST00000531077 433 ntTSL 3 BASIC5.19□□□□□ -1.58
CCDC3Q9BQI4 AC012414.2-201ENST00000559474 187 ntBASIC5.19□□□□□ -1.58
CCDC3Q9BQI4 AC010528.1-201ENST00000568714 739 ntTSL 4 BASIC5.19□□□□□ -1.58
CCDC3Q9BQI4 AC092683.1-203ENST00000594050 654 ntTSL 5 BASIC5.19□□□□□ -1.58
CCDC3Q9BQI4 ELSPBP1-205ENST00000597519 557 ntTSL 3 BASIC5.19□□□□□ -1.58
CCDC3Q9BQI4 ERVK-28-203ENST00000600419 457 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
CCDC3Q9BQI4 AC025857.2-201ENST00000602711 238 ntBASIC5.19□□□□□ -1.58
CCDC3Q9BQI4 XIST-210ENST00000602863 775 ntTSL 3 BASIC5.19□□□□□ -1.58
CCDC3Q9BQI4 IGLCOR22-2-201ENST00000605398 313 ntBASIC5.19□□□□□ -1.58
CCDC3Q9BQI4 AP005131.7-201ENST00000610087 611 ntBASIC5.19□□□□□ -1.58
CCDC3Q9BQI4 uc_338.7-201ENST00000621834 124 ntBASIC5.19□□□□□ -1.58
CCDC3Q9BQI4 AC073342.3-201ENST00000624211 193 ntBASIC5.19□□□□□ -1.58
CCDC3Q9BQI4 AC087667.1-201ENST00000500180 1422 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
CCDC3Q9BQI4 FOXN2-203ENST00000616844 1414 ntTSL 5 BASIC5.19□□□□□ -1.58
CCDC3Q9BQI4 HHLA2-209ENST00000489514 2406 ntAPPRIS P3 TSL 1 (best) BASIC5.19□□□□□ -1.58
CCDC3Q9BQI4 RLIM-201ENST00000332687 8317 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
CCDC3Q9BQI4 TC2N-203ENST00000435962 5146 ntAPPRIS P1 TSL 2 BASIC5.19□□□□□ -1.58
CCDC3Q9BQI4 DOPEY1-202ENST00000349129 8210 ntAPPRIS P3 TSL 1 (best) BASIC5.19□□□□□ -1.58
CCDC3Q9BQI4 FGF1-215ENST00000619447 3818 ntAPPRIS P1 TSL 4 BASIC5.19□□□□□ -1.58
CCDC3Q9BQI4 DTNA-202ENST00000283365 6522 ntTSL 5 BASIC5.19□□□□□ -1.58
CCDC3Q9BQI4 AC015799.1-201ENST00000622996 3122 ntBASIC5.19□□□□□ -1.58
CCDC3Q9BQI4 OR7A5-201ENST00000322301 4216 ntAPPRIS P1 BASIC5.18□□□□□ -1.58
CCDC3Q9BQI4 CNGA1-202ENST00000402813 2867 ntAPPRIS ALT2 TSL 1 (best) BASIC5.18□□□□□ -1.58
CCDC3Q9BQI4 ACSL5-202ENST00000354655 3351 ntAPPRIS P1 TSL 2 BASIC5.18□□□□□ -1.58
CCDC3Q9BQI4 AL078621.3-201ENST00000623707 2042 ntBASIC5.18□□□□□ -1.58
CCDC3Q9BQI4 AC021205.3-201ENST00000609680 1709 ntTSL 3 BASIC5.18□□□□□ -1.58
CCDC3Q9BQI4 SMARCA2-206ENST00000382185 1584 ntTSL 2 BASIC5.18□□□□□ -1.58
CCDC3Q9BQI4 ZFYVE9-202ENST00000357206 4567 ntAPPRIS ALT1 TSL 1 (best) BASIC5.18□□□□□ -1.58
CCDC3Q9BQI4 OR7G2-201ENST00000305456 1038 ntAPPRIS P2 BASIC5.18□□□□□ -1.58
CCDC3Q9BQI4 IKZF3-202ENST00000346243 1296 ntTSL 5 BASIC5.18□□□□□ -1.58
CCDC3Q9BQI4 PLIN2-202ENST00000380464 655 ntTSL 2 BASIC5.18□□□□□ -1.58
CCDC3Q9BQI4 DEFB127-201ENST00000382388 514 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
CCDC3Q9BQI4 Y_RNA.625-201ENST00000411256 107 ntBASIC5.18□□□□□ -1.58
CCDC3Q9BQI4 AL356968.2-201ENST00000412769 1257 ntBASIC5.18□□□□□ -1.58
CCDC3Q9BQI4 AL591468.1-201ENST00000417932 573 ntTSL 3 BASIC5.18□□□□□ -1.58
CCDC3Q9BQI4 SOS1-IT1-201ENST00000420644 539 ntTSL 5 BASIC5.18□□□□□ -1.58
CCDC3Q9BQI4 DPH5-204ENST00000427040 609 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
CCDC3Q9BQI4 AC092164.1-202ENST00000428036 486 ntTSL 3 BASIC5.18□□□□□ -1.58
CCDC3Q9BQI4 RBMY2QP-201ENST00000429799 1147 ntBASIC5.18□□□□□ -1.58
CCDC3Q9BQI4 AL513323.1-201ENST00000431862 1063 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
CCDC3Q9BQI4 GUSBP6-201ENST00000434932 640 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
CCDC3Q9BQI4 PA2G4P6-201ENST00000438325 1197 ntBASIC5.18□□□□□ -1.58
CCDC3Q9BQI4 IKZF3-212ENST00000439016 1246 ntTSL 5 BASIC5.18□□□□□ -1.58
CCDC3Q9BQI4 TXNP2-201ENST00000443918 295 ntBASIC5.18□□□□□ -1.58
CCDC3Q9BQI4 AC017099.1-201ENST00000448261 1028 ntBASIC5.18□□□□□ -1.58
CCDC3Q9BQI4 Z92846.1-201ENST00000456203 268 ntBASIC5.18□□□□□ -1.58
CCDC3Q9BQI4 AC011287.2-201ENST00000456809 842 ntTSL 5 BASIC5.18□□□□□ -1.58
CCDC3Q9BQI4 RPL7P40-201ENST00000481703 745 ntBASIC5.18□□□□□ -1.58
CCDC3Q9BQI4 AC087071.2-201ENST00000483283 575 ntTSL 4 BASIC5.18□□□□□ -1.58
CCDC3Q9BQI4 ZCCHC10-209ENST00000513541 794 ntAPPRIS ALT2 TSL 2 BASIC5.18□□□□□ -1.58
CCDC3Q9BQI4 EIF3KP3-201ENST00000514461 639 ntBASIC5.18□□□□□ -1.58
CCDC3Q9BQI4 AC124069.1-201ENST00000517454 735 ntTSL 3 BASIC5.18□□□□□ -1.58
CCDC3Q9BQI4 AC011840.5-201ENST00000582125 771 ntBASIC5.18□□□□□ -1.58
CCDC3Q9BQI4 AC022154.1-203ENST00000594850 493 ntTSL 3 BASIC5.18□□□□□ -1.58
CCDC3Q9BQI4 QTRT1P1-201ENST00000604344 1078 ntBASIC5.18□□□□□ -1.58
CCDC3Q9BQI4 AL139124.1-201ENST00000609123 421 ntBASIC5.18□□□□□ -1.58
CCDC3Q9BQI4 AC100827.5-201ENST00000615883 426 ntBASIC5.18□□□□□ -1.58
CCDC3Q9BQI4 AL445528.2-201ENST00000620582 470 ntBASIC5.18□□□□□ -1.58
CCDC3Q9BQI4 MYOCOS-202ENST00000636788 1039 ntAPPRIS ALT2 TSL 5 BASIC5.18□□□□□ -1.58
CCDC3Q9BQI4 AC073869.8-201ENST00000641806 335 ntBASIC5.18□□□□□ -1.58
CCDC3Q9BQI4 LIX1-AS1-201ENST00000504578 1793 ntTSL 5 BASIC5.18□□□□□ -1.58
CCDC3Q9BQI4 IGF2BP3-218ENST00000619562 2126 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
CCDC3Q9BQI4 CASC19-201ENST00000500112 5735 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
CCDC3Q9BQI4 GAPT-202ENST00000396776 3016 ntAPPRIS P1 TSL 2 BASIC5.18□□□□□ -1.58
CCDC3Q9BQI4 SLC35A5-206ENST00000492406 4399 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
CCDC3Q9BQI4 MLIP-213ENST00000514921 5743 ntAPPRIS ALT2 TSL 1 (best) BASIC5.18□□□□□ -1.58
CCDC3Q9BQI4 IKZF2-201ENST00000342002 3747 ntAPPRIS ALT2 TSL 1 (best) BASIC5.18□□□□□ -1.58
CCDC3Q9BQI4 MAMDC2-AS1-201ENST00000377178 1504 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
CCDC3Q9BQI4 CASC1-201ENST00000320267 2361 ntAPPRIS ALT2 TSL 1 (best) BASIC5.18□□□□□ -1.58
CCDC3Q9BQI4 SOX2-OT-218ENST00000498731 3576 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
CCDC3Q9BQI4 DUSP19-202ENST00000354221 5176 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
CCDC3Q9BQI4 MBNL2-204ENST00000397601 4487 ntTSL 5 BASIC5.17□□□□□ -1.58
CCDC3Q9BQI4 PLCH1-201ENST00000334686 6128 ntAPPRIS P3 TSL 1 (best) BASIC5.17□□□□□ -1.58
CCDC3Q9BQI4 LINC02030-201ENST00000492683 1602 ntTSL 5 BASIC5.17□□□□□ -1.58
CCDC3Q9BQI4 LINS1-214ENST00000561308 1612 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
CCDC3Q9BQI4 EIF4EBP2-201ENST00000373218 7257 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
CCDC3Q9BQI4 C2orf76-201ENST00000334816 676 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
CCDC3Q9BQI4 RNF212B-201ENST00000399905 1071 ntTSL 5 BASIC5.17□□□□□ -1.58
CCDC3Q9BQI4 AL358178.1-201ENST00000407698 397 ntBASIC5.17□□□□□ -1.58
CCDC3Q9BQI4 PRR21-201ENST00000408934 1170 ntAPPRIS P1 BASIC5.17□□□□□ -1.58
CCDC3Q9BQI4 AC003975.1-201ENST00000411856 837 ntTSL 3 BASIC5.17□□□□□ -1.58
CCDC3Q9BQI4 AC098820.3-201ENST00000414135 976 ntTSL 3 BASIC5.17□□□□□ -1.58
CCDC3Q9BQI4 AL354868.1-201ENST00000417077 482 ntBASIC5.17□□□□□ -1.58
CCDC3Q9BQI4 AC073333.1-201ENST00000418907 648 ntTSL 3 BASIC5.17□□□□□ -1.58
CCDC3Q9BQI4 RPS26P13-201ENST00000419030 330 ntBASIC5.17□□□□□ -1.58
CCDC3Q9BQI4 AC106901.1-201ENST00000425086 698 ntBASIC5.17□□□□□ -1.58
CCDC3Q9BQI4 MRPS33P4-201ENST00000434892 317 ntBASIC5.17□□□□□ -1.58
CCDC3Q9BQI4 DNAJB5P1-201ENST00000454004 806 ntBASIC5.17□□□□□ -1.58
CCDC3Q9BQI4 THOC7-AS1-201ENST00000468961 673 ntTSL 2 BASIC5.17□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 151.5 ms