Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 TMEM161B-210ENST00000511218 1351 ntTSL 2 BASIC6□□□□□ -1.45
CIITAP33076 OR4K1-203ENST00000641429 1358 ntAPPRIS P1 BASIC6□□□□□ -1.45
CIITAP33076 SCN2A-207ENST00000631182 8430 ntAPPRIS ALT1 TSL 5 BASIC6□□□□□ -1.45
CIITAP33076 AL360270.2-201ENST00000562952 5985 ntBASIC6□□□□□ -1.45
CIITAP33076 SLAIN1-201ENST00000267219 2090 ntAPPRIS ALT2 TSL 1 (best) BASIC6□□□□□ -1.45
CIITAP33076 SCN2A-203ENST00000375437 8792 ntAPPRIS ALT1 TSL 5 BASIC6□□□□□ -1.45
CIITAP33076 IL1RAP-205ENST00000412504 4875 ntAPPRIS P1 TSL 1 (best) BASIC5.99□□□□□ -1.45
CIITAP33076 ALMS1-IT1-201ENST00000441587 2107 ntTSL 1 (best) BASIC5.99□□□□□ -1.45
CIITAP33076 VPS50-202ENST00000305866 3613 ntAPPRIS P1 TSL 1 (best) BASIC5.99□□□□□ -1.45
CIITAP33076 RYR3-201ENST00000389232 15552 ntAPPRIS ALT2 TSL 5 BASIC5.99□□□□□ -1.45
CIITAP33076 MYO5A-201ENST00000356338 11971 ntAPPRIS ALT1 TSL 1 (best) BASIC5.99□□□□□ -1.45
CIITAP33076 AC008691.1-207ENST00000636819 4154 ntTSL 5 BASIC5.99□□□□□ -1.45
CIITAP33076 FGF1-202ENST00000359370 3660 ntAPPRIS P1 TSL 1 (best) BASIC5.99□□□□□ -1.45
CIITAP33076 C15orf54-202ENST00000625107 3078 ntTSL 1 (best) BASIC5.99□□□□□ -1.45
CIITAP33076 CNGA1-202ENST00000402813 2867 ntAPPRIS ALT2 TSL 1 (best) BASIC5.99□□□□□ -1.45
CIITAP33076 CSNK1G3-205ENST00000510842 1979 ntAPPRIS ALT2 TSL 2 BASIC5.99□□□□□ -1.45
CIITAP33076 DECR1-215ENST00000522161 1766 ntAPPRIS ALT2 TSL 2 BASIC5.99□□□□□ -1.45
CIITAP33076 MTND5P23-201ENST00000430812 1655 ntBASIC5.99□□□□□ -1.45
CIITAP33076 EOGT-208ENST00000540764 1584 ntAPPRIS P1 TSL 1 (best) BASIC5.99□□□□□ -1.45
CIITAP33076 CFH-201ENST00000359637 1454 ntTSL 1 (best) BASIC5.99□□□□□ -1.45
CIITAP33076 IL23R-202ENST00000395227 1459 ntTSL 3 BASIC5.99□□□□□ -1.45
CIITAP33076 MGP-201ENST00000228938 694 ntTSL 3 BASIC5.99□□□□□ -1.45
CIITAP33076 NME5-201ENST00000265191 1198 ntAPPRIS P1 TSL 1 (best) BASIC5.99□□□□□ -1.45
CIITAP33076 U3.7-201ENST00000363668 216 ntBASIC5.99□□□□□ -1.45
CIITAP33076 FABP7-202ENST00000368444 1026 ntAPPRIS P1 TSL 1 (best) BASIC5.99□□□□□ -1.45
CIITAP33076 TEX36-201ENST00000368821 922 ntAPPRIS P3 TSL 1 (best) BASIC5.99□□□□□ -1.45
CIITAP33076 RNU6-152P-201ENST00000384037 107 ntBASIC5.99□□□□□ -1.45
CIITAP33076 AL589655.1-201ENST00000405398 482 ntBASIC5.99□□□□□ -1.45
CIITAP33076 RN7SKP273-201ENST00000411392 314 ntBASIC5.99□□□□□ -1.45
CIITAP33076 BMS1P13-201ENST00000417301 885 ntBASIC5.99□□□□□ -1.45
CIITAP33076 ERMN-209ENST00000420719 1246 ntTSL 2 BASIC5.99□□□□□ -1.45
CIITAP33076 MORF4L2-205ENST00000423833 717 ntTSL 5 BASIC5.99□□□□□ -1.45
CIITAP33076 AC018832.1-201ENST00000428171 566 ntTSL 4 BASIC5.99□□□□□ -1.45
CIITAP33076 RPL7AP49-201ENST00000429522 581 ntBASIC5.99□□□□□ -1.45
CIITAP33076 AL158835.2-201ENST00000430970 300 ntTSL 2 BASIC5.99□□□□□ -1.45
CIITAP33076 AL591438.1-201ENST00000433508 581 ntBASIC5.99□□□□□ -1.45
CIITAP33076 SNRPFP2-201ENST00000440710 251 ntBASIC5.99□□□□□ -1.45
CIITAP33076 AL606490.8-201ENST00000441624 319 ntBASIC5.99□□□□□ -1.45
CIITAP33076 FAR2P1-206ENST00000449736 709 ntBASIC5.99□□□□□ -1.45
CIITAP33076 AL590652.1-201ENST00000453790 850 ntTSL 3 BASIC5.99□□□□□ -1.45
CIITAP33076 AL389915.2-201ENST00000454576 441 ntBASIC5.99□□□□□ -1.45
CIITAP33076 Z92846.1-201ENST00000456203 268 ntBASIC5.99□□□□□ -1.45
CIITAP33076 EIF2S2P4-201ENST00000461070 984 ntBASIC5.99□□□□□ -1.45
CIITAP33076 AC074386.1-201ENST00000476560 767 ntBASIC5.99□□□□□ -1.45
CIITAP33076 RPL15P21-201ENST00000495592 567 ntBASIC5.99□□□□□ -1.45
CIITAP33076 AC006499.3-201ENST00000506077 748 ntBASIC5.99□□□□□ -1.45
CIITAP33076 AC025768.1-201ENST00000510057 267 ntBASIC5.99□□□□□ -1.45
CIITAP33076 AC012055.1-201ENST00000511346 1144 ntTSL 3 BASIC5.99□□□□□ -1.45
CIITAP33076 HMGN1P15-201ENST00000513870 295 ntBASIC5.99□□□□□ -1.45
CIITAP33076 AC010261.2-201ENST00000515563 588 ntTSL 2 BASIC5.99□□□□□ -1.45
CIITAP33076 RNA5SP92-201ENST00000516437 110 ntBASIC5.99□□□□□ -1.45
CIITAP33076 LINC00535-203ENST00000520096 790 ntTSL 3 BASIC5.99□□□□□ -1.45
CIITAP33076 MAL2-208ENST00000523307 556 ntTSL 4 BASIC5.99□□□□□ -1.45
CIITAP33076 MS4A6A-210ENST00000529054 1160 ntTSL 5 BASIC5.99□□□□□ -1.45
CIITAP33076 AP002370.2-202ENST00000533669 908 ntTSL 5 BASIC5.99□□□□□ -1.45
CIITAP33076 AC134349.2-201ENST00000535136 910 ntBASIC5.99□□□□□ -1.45
CIITAP33076 ASB8-215ENST00000540782 659 ntTSL 3 BASIC5.99□□□□□ -1.45
CIITAP33076 CPSF7-220ENST00000541963 549 ntTSL 4 BASIC5.99□□□□□ -1.45
CIITAP33076 AL355112.1-201ENST00000550309 1236 ntTSL 1 (best) BASIC5.99□□□□□ -1.45
CIITAP33076 AL121839.1-201ENST00000556233 1185 ntBASIC5.99□□□□□ -1.45
CIITAP33076 PDCD6IPP2-207ENST00000566321 1069 ntBASIC5.99□□□□□ -1.45
CIITAP33076 RPAP2P1-201ENST00000603626 1168 ntBASIC5.99□□□□□ -1.45
CIITAP33076 AC008814.1-201ENST00000603797 406 ntBASIC5.99□□□□□ -1.45
CIITAP33076 OR4H6P-202ENST00000603819 340 ntBASIC5.99□□□□□ -1.45
CIITAP33076 AP2B1-222ENST00000628168 192 ntTSL 5 BASIC5.99□□□□□ -1.45
CIITAP33076 SLC8A1-AS1-239ENST00000631142 623 ntTSL 5 BASIC5.99□□□□□ -1.45
CIITAP33076 CCDC195-201ENST00000638102 606 ntAPPRIS P1 TSL 5 BASIC5.99□□□□□ -1.45
CIITAP33076 ERVW-1-201ENST00000493463 2925 ntAPPRIS P1 BASIC5.99□□□□□ -1.45
CIITAP33076 ETV1-208ENST00000420159 6231 ntTSL 2 BASIC5.99□□□□□ -1.45
CIITAP33076 ATF2-202ENST00000345739 4079 ntTSL 1 (best) BASIC5.99□□□□□ -1.45
CIITAP33076 PEX26-201ENST00000329627 18445 ntAPPRIS P1 TSL 1 (best) BASIC5.99□□□□□ -1.45
CIITAP33076 AP001002.1-201ENST00000625148 1513 ntBASIC5.99□□□□□ -1.45
CIITAP33076 KLHL5-202ENST00000261426 3300 ntTSL 1 (best) BASIC5.99□□□□□ -1.45
CIITAP33076 AC098798.1-201ENST00000503998 1447 ntTSL 5 BASIC5.99□□□□□ -1.45
CIITAP33076 MGC32805-205ENST00000510972 1424 ntTSL 1 (best) BASIC5.99□□□□□ -1.45
CIITAP33076 RGS17-202ENST00000367225 7773 ntAPPRIS P1 TSL 1 (best) BASIC5.99□□□□□ -1.45
CIITAP33076 AC092451.3-201ENST00000625067 1343 ntBASIC5.99□□□□□ -1.45
CIITAP33076 AC092747.4-201ENST00000620519 1861 ntBASIC5.98□□□□□ -1.45
CIITAP33076 ZNF83-203ENST00000541777 3743 ntAPPRIS P1 TSL 1 (best) BASIC5.98□□□□□ -1.45
CIITAP33076 LARS-201ENST00000274562 2213 ntTSL 2 BASIC5.98□□□□□ -1.45
CIITAP33076 ERVH48-1-201ENST00000447535 2790 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
CIITAP33076 CDC27P2-201ENST00000425026 1922 ntBASIC5.98□□□□□ -1.45
CIITAP33076 RNU6-386P-201ENST00000362650 107 ntBASIC5.98□□□□□ -1.45
CIITAP33076 RNU1-19P-201ENST00000363306 165 ntBASIC5.98□□□□□ -1.45
CIITAP33076 RNU1-43P-201ENST00000365052 165 ntBASIC5.98□□□□□ -1.45
CIITAP33076 PRKACB-203ENST00000370684 869 ntTSL 5 BASIC5.98□□□□□ -1.45
CIITAP33076 AMELX-202ENST00000380712 835 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
CIITAP33076 AMELX-203ENST00000380714 793 ntAPPRIS P1 TSL 1 (best) BASIC5.98□□□□□ -1.45
CIITAP33076 SNORA70.6-201ENST00000383934 134 ntBASIC5.98□□□□□ -1.45
CIITAP33076 MIR105-1-201ENST00000385222 81 ntBASIC5.98□□□□□ -1.45
CIITAP33076 NRG4-201ENST00000394907 1159 ntAPPRIS P1 TSL 1 (best) BASIC5.98□□□□□ -1.45
CIITAP33076 AC005522.1-201ENST00000395416 346 ntBASIC5.98□□□□□ -1.45
CIITAP33076 DUTP5-201ENST00000406790 469 ntBASIC5.98□□□□□ -1.45
CIITAP33076 AL358178.1-201ENST00000407698 397 ntBASIC5.98□□□□□ -1.45
CIITAP33076 GLS-203ENST00000409215 632 ntTSL 4 BASIC5.98□□□□□ -1.45
CIITAP33076 AHSA2-203ENST00000410073 479 ntTSL 5 BASIC5.98□□□□□ -1.45
CIITAP33076 Z86062.2-201ENST00000411442 380 ntTSL 5 BASIC5.98□□□□□ -1.45
CIITAP33076 AL035404.2-201ENST00000424418 304 ntTSL 3 BASIC5.98□□□□□ -1.45
CIITAP33076 AL445528.1-201ENST00000426330 420 ntBASIC5.98□□□□□ -1.45
CIITAP33076 RPL5P2-201ENST00000429598 854 ntBASIC5.98□□□□□ -1.45
Retrieved 100 of 98,524 protein–RNA pairs in 72.7 ms