Protein–RNA interactions for Protein: Q9NSU2

TREX1, Three-prime repair exonuclease 1, humanhuman

Predictions only

Length 369 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TREX1Q9NSU2 LINC02528-201ENST00000417800 381 ntTSL 2 BASIC5.08□□□□□ -1.6
TREX1Q9NSU2 AL031428.1-201ENST00000427154 666 ntTSL 2 BASIC5.08□□□□□ -1.6
TREX1Q9NSU2 AL354896.1-201ENST00000430214 561 ntTSL 4 BASIC5.08□□□□□ -1.6
TREX1Q9NSU2 LINC01889-201ENST00000430692 668 ntTSL 5 BASIC5.08□□□□□ -1.6
TREX1Q9NSU2 C21orf91-OT1-203ENST00000439392 497 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
TREX1Q9NSU2 RPS29P9-201ENST00000440360 171 ntBASIC5.08□□□□□ -1.6
TREX1Q9NSU2 KRTAP8-2P-201ENST00000440620 186 ntBASIC5.08□□□□□ -1.6
TREX1Q9NSU2 AC092941.2-201ENST00000444379 1008 ntTSL 3 BASIC5.08□□□□□ -1.6
TREX1Q9NSU2 KNOP1P3-201ENST00000446933 426 ntBASIC5.08□□□□□ -1.6
TREX1Q9NSU2 RPS17P2-201ENST00000461663 408 ntBASIC5.08□□□□□ -1.6
TREX1Q9NSU2 OR2AO1P-201ENST00000476497 403 ntBASIC5.08□□□□□ -1.6
TREX1Q9NSU2 CREM-238ENST00000488741 651 ntTSL 2 BASIC5.08□□□□□ -1.6
TREX1Q9NSU2 AC004889.1-208ENST00000489077 423 ntTSL 3 BASIC5.08□□□□□ -1.6
TREX1Q9NSU2 AC104126.1-201ENST00000504004 711 ntTSL 3 BASIC5.08□□□□□ -1.6
TREX1Q9NSU2 AP002373.2-201ENST00000541631 1060 ntBASIC5.08□□□□□ -1.6
TREX1Q9NSU2 AL133166.1-205ENST00000548306 569 ntTSL 4 BASIC5.08□□□□□ -1.6
TREX1Q9NSU2 AGGF1P9-201ENST00000561884 913 ntBASIC5.08□□□□□ -1.6
TREX1Q9NSU2 MIR3176-201ENST00000582210 90 ntBASIC5.08□□□□□ -1.6
TREX1Q9NSU2 AC022154.1-203ENST00000594850 493 ntTSL 3 BASIC5.08□□□□□ -1.6
TREX1Q9NSU2 AC034238.1-215ENST00000609792 219 ntTSL 5 BASIC5.08□□□□□ -1.6
TREX1Q9NSU2 AC126915.2-201ENST00000610957 190 ntBASIC5.08□□□□□ -1.6
TREX1Q9NSU2 AJ009632.2-203ENST00000634708 1205 ntTSL 5 BASIC5.08□□□□□ -1.6
TREX1Q9NSU2 RUFY3-201ENST00000226328 4233 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
TREX1Q9NSU2 RNF213-204ENST00000508628 17730 ntAPPRIS ALT2 TSL 5 BASIC5.08□□□□□ -1.6
TREX1Q9NSU2 ATP1B4-202ENST00000361319 3856 ntAPPRIS P3 TSL 1 (best) BASIC5.08□□□□□ -1.6
TREX1Q9NSU2 PPEF1-201ENST00000349874 2687 ntTSL 5 BASIC5.08□□□□□ -1.6
TREX1Q9NSU2 AC011447.7-201ENST00000624228 1590 ntBASIC5.08□□□□□ -1.6
TREX1Q9NSU2 HTR1F-201ENST00000319595 3140 ntAPPRIS P1 BASIC5.08□□□□□ -1.6
TREX1Q9NSU2 AC063976.2-201ENST00000425667 3556 ntBASIC5.08□□□□□ -1.6
TREX1Q9NSU2 AL022311.1-201ENST00000623726 19416 ntBASIC5.07□□□□□ -1.6
TREX1Q9NSU2 PRUNE2-207ENST00000428286 12437 ntTSL 5 BASIC5.07□□□□□ -1.6
TREX1Q9NSU2 TTBK2-201ENST00000267890 10905 ntAPPRIS P2 TSL 5 BASIC5.07□□□□□ -1.6
TREX1Q9NSU2 LINC02302-201ENST00000556405 2904 ntTSL 2 BASIC5.07□□□□□ -1.6
TREX1Q9NSU2 UBR5-204ENST00000518205 1931 ntTSL 5 BASIC5.07□□□□□ -1.6
TREX1Q9NSU2 ZNF616-204ENST00000600228 4335 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
TREX1Q9NSU2 AC092111.2-201ENST00000611627 1414 ntBASIC5.07□□□□□ -1.6
TREX1Q9NSU2 AC106895.2-201ENST00000511291 1824 ntTSL 3 BASIC5.07□□□□□ -1.6
TREX1Q9NSU2 SMC2-203ENST00000374793 5909 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
TREX1Q9NSU2 PPIG-201ENST00000260970 6368 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
TREX1Q9NSU2 OR9G1-202ENST00000642097 3611 ntAPPRIS P1 BASIC5.07□□□□□ -1.6
TREX1Q9NSU2 AL033384.1-202ENST00000431554 3104 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
TREX1Q9NSU2 PCDH15-207ENST00000395430 7002 ntTSL 5 BASIC5.07□□□□□ -1.6
TREX1Q9NSU2 TCF4-290ENST00000638154 7801 ntAPPRIS ALT1 TSL 5 BASIC5.07□□□□□ -1.6
TREX1Q9NSU2 AL353625.1-202ENST00000366273 571 ntBASIC5.07□□□□□ -1.6
TREX1Q9NSU2 MIR1286-201ENST00000408112 78 ntBASIC5.07□□□□□ -1.6
TREX1Q9NSU2 SNORA77-201ENST00000408716 125 ntBASIC5.07□□□□□ -1.6
TREX1Q9NSU2 AF015720.1-201ENST00000412240 349 ntTSL 3 BASIC5.07□□□□□ -1.6
TREX1Q9NSU2 AC211486.3-201ENST00000412694 621 ntBASIC5.07□□□□□ -1.6
TREX1Q9NSU2 TXNIP-201ENST00000425134 1225 ntTSL 2 BASIC5.07□□□□□ -1.6
TREX1Q9NSU2 STXBP5-AS1-204ENST00000431143 644 ntTSL 3 BASIC5.07□□□□□ -1.6
TREX1Q9NSU2 ARAFP2-201ENST00000440565 559 ntBASIC5.07□□□□□ -1.6
TREX1Q9NSU2 AL450023.3-201ENST00000440592 271 ntBASIC5.07□□□□□ -1.6
TREX1Q9NSU2 TXNP5-201ENST00000441043 315 ntBASIC5.07□□□□□ -1.6
TREX1Q9NSU2 AC092647.2-201ENST00000452998 253 ntBASIC5.07□□□□□ -1.6
TREX1Q9NSU2 AL389915.2-201ENST00000454576 441 ntBASIC5.07□□□□□ -1.6
TREX1Q9NSU2 CLEC2A-202ENST00000455827 916 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
TREX1Q9NSU2 LINC02083-201ENST00000462835 515 ntTSL 3 BASIC5.07□□□□□ -1.6
TREX1Q9NSU2 AC092957.1-201ENST00000473299 570 ntTSL 4 BASIC5.07□□□□□ -1.6
TREX1Q9NSU2 AC069272.1-201ENST00000514843 680 ntTSL 3 BASIC5.07□□□□□ -1.6
TREX1Q9NSU2 RPL23AP53-201ENST00000521854 457 ntBASIC5.07□□□□□ -1.6
TREX1Q9NSU2 AP006245.2-201ENST00000522004 300 ntBASIC5.07□□□□□ -1.6
TREX1Q9NSU2 AC079089.1-204ENST00000530194 572 ntTSL 2 BASIC5.07□□□□□ -1.6
TREX1Q9NSU2 LINC02451-202ENST00000548764 579 ntTSL 4 BASIC5.07□□□□□ -1.6
TREX1Q9NSU2 AC020661.4-201ENST00000561388 500 ntTSL 3 BASIC5.07□□□□□ -1.6
TREX1Q9NSU2 MIR7515HG-254ENST00000593269 943 ntTSL 5 BASIC5.07□□□□□ -1.6
TREX1Q9NSU2 AC006272.2-201ENST00000594725 163 ntBASIC5.07□□□□□ -1.6
TREX1Q9NSU2 AP000864.1-201ENST00000609424 650 ntBASIC5.07□□□□□ -1.6
TREX1Q9NSU2 HNF1A-AS1-205ENST00000619441 343 ntTSL 3 BASIC5.07□□□□□ -1.6
TREX1Q9NSU2 RPGRIP1L-212ENST00000621565 6038 ntAPPRIS ALT1 TSL 1 (best) BASIC5.07□□□□□ -1.6
TREX1Q9NSU2 LINC00624-202ENST00000621316 3372 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
TREX1Q9NSU2 LINC01520-201ENST00000441457 1487 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
TREX1Q9NSU2 USP28-213ENST00000544967 3498 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
TREX1Q9NSU2 MOCS2-203ENST00000450852 1337 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
TREX1Q9NSU2 AC017079.1-201ENST00000333650 415 ntBASIC5.06□□□□□ -1.6
TREX1Q9NSU2 OR14A16-201ENST00000357627 930 ntAPPRIS P1 BASIC5.06□□□□□ -1.6
TREX1Q9NSU2 ATP5HP3-201ENST00000396994 486 ntBASIC5.06□□□□□ -1.6
TREX1Q9NSU2 LRRC37BP1-201ENST00000398851 714 ntBASIC5.06□□□□□ -1.6
TREX1Q9NSU2 RN7SKP126-201ENST00000411143 300 ntBASIC5.06□□□□□ -1.6
TREX1Q9NSU2 ATP6V1G1P7-201ENST00000415853 349 ntBASIC5.06□□□□□ -1.6
TREX1Q9NSU2 SETP10-201ENST00000424368 814 ntBASIC5.06□□□□□ -1.6
TREX1Q9NSU2 AL450992.2-201ENST00000434182 506 ntTSL 5 BASIC5.06□□□□□ -1.6
TREX1Q9NSU2 AL133247.1-201ENST00000435713 646 ntTSL 3 BASIC5.06□□□□□ -1.6
TREX1Q9NSU2 TBX18-AS1-202ENST00000441863 382 ntTSL 2 BASIC5.06□□□□□ -1.6
TREX1Q9NSU2 FAR2P1-206ENST00000449736 709 ntBASIC5.06□□□□□ -1.6
TREX1Q9NSU2 ZCCHC10-210ENST00000513848 876 ntAPPRIS ALT2 TSL 2 BASIC5.06□□□□□ -1.6
TREX1Q9NSU2 FTH1P11-201ENST00000517577 551 ntBASIC5.06□□□□□ -1.6
TREX1Q9NSU2 AC012339.2-201ENST00000523996 453 ntBASIC5.06□□□□□ -1.6
TREX1Q9NSU2 CACNA1C-IT1-201ENST00000542984 687 ntTSL 3 BASIC5.06□□□□□ -1.6
TREX1Q9NSU2 NOP10-202ENST00000557912 436 ntTSL 2 BASIC5.06□□□□□ -1.6
TREX1Q9NSU2 AC066612.1-202ENST00000561094 518 ntTSL 5 BASIC5.06□□□□□ -1.6
TREX1Q9NSU2 ARPP19-204ENST00000563277 955 ntTSL 2 BASIC5.06□□□□□ -1.6
TREX1Q9NSU2 AC073254.1-207ENST00000600482 714 ntTSL 5 BASIC5.06□□□□□ -1.6
TREX1Q9NSU2 MIR6768-201ENST00000610734 72 ntBASIC5.06□□□□□ -1.6
TREX1Q9NSU2 DAOA-AS1_1.1-201ENST00000613021 201 ntBASIC5.06□□□□□ -1.6
TREX1Q9NSU2 AC008115.4-201ENST00000619780 775 ntBASIC5.06□□□□□ -1.6
TREX1Q9NSU2 AC099494.2-201ENST00000623371 978 ntBASIC5.06□□□□□ -1.6
TREX1Q9NSU2 AP002505.2-201ENST00000623585 696 ntBASIC5.06□□□□□ -1.6
TREX1Q9NSU2 RNF123-214ENST00000629802 207 ntTSL 5 BASIC5.06□□□□□ -1.6
TREX1Q9NSU2 LINC02341-201ENST00000637043 824 ntTSL 3 BASIC5.06□□□□□ -1.6
TREX1Q9NSU2 MIR4302-201ENST00000638058 60 ntBASIC5.06□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 83.6 ms