Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 USP26-203ENST00000511190 3665 ntAPPRIS P1 TSL 2 BASIC5.2□□□□□ -1.58
HMGA1P17096 MS4A1-207ENST00000532073 2560 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
HMGA1P17096 EBF1-211ENST00000622875 4430 ntTSL 5 BASIC5.2□□□□□ -1.58
HMGA1P17096 LINC01844-201ENST00000432677 2237 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
HMGA1P17096 ANXA1-201ENST00000257497 1509 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
HMGA1P17096 ELSPBP1-201ENST00000339841 1052 ntAPPRIS P2 TSL 1 (best) BASIC5.2□□□□□ -1.58
HMGA1P17096 LINC00474-201ENST00000374014 769 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
HMGA1P17096 AC006369.1-201ENST00000419425 548 ntTSL 3 BASIC5.2□□□□□ -1.58
HMGA1P17096 AL451042.1-201ENST00000426353 544 ntTSL 3 BASIC5.2□□□□□ -1.58
HMGA1P17096 AL450472.1-201ENST00000439434 405 ntTSL 2 BASIC5.2□□□□□ -1.58
HMGA1P17096 CEACAMP9-201ENST00000442990 513 ntBASIC5.2□□□□□ -1.58
HMGA1P17096 AC004980.3-201ENST00000447046 365 ntBASIC5.2□□□□□ -1.58
HMGA1P17096 AL356390.1-201ENST00000455684 397 ntBASIC5.2□□□□□ -1.58
HMGA1P17096 CLEC2A-202ENST00000455827 916 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
HMGA1P17096 AC096759.1-201ENST00000510744 473 ntTSL 3 BASIC5.2□□□□□ -1.58
HMGA1P17096 AC008147.3-201ENST00000548666 354 ntBASIC5.2□□□□□ -1.58
HMGA1P17096 NDUFB4P11-201ENST00000560510 395 ntBASIC5.2□□□□□ -1.58
HMGA1P17096 ARPP19-204ENST00000563277 955 ntTSL 2 BASIC5.2□□□□□ -1.58
HMGA1P17096 AL391358.1-201ENST00000605342 190 ntBASIC5.2□□□□□ -1.58
HMGA1P17096 USP32P2-207ENST00000608376 253 ntTSL 5 BASIC5.2□□□□□ -1.58
HMGA1P17096 AC239803.2-201ENST00000610161 430 ntBASIC5.2□□□□□ -1.58
HMGA1P17096 AC087821.1-201ENST00000623639 567 ntBASIC5.2□□□□□ -1.58
HMGA1P17096 FRYL-209ENST00000506685 1940 ntTSL 5 BASIC5.2□□□□□ -1.58
HMGA1P17096 FZD6-205ENST00000522566 3719 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
HMGA1P17096 CLVS1-205ENST00000519846 3622 ntAPPRIS P1 TSL 5 BASIC5.2□□□□□ -1.58
HMGA1P17096 ZNF260-204ENST00000592282 5055 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
HMGA1P17096 NCOA7-208ENST00000438495 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC5.2□□□□□ -1.58
HMGA1P17096 MDN1-201ENST00000369393 18413 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
HMGA1P17096 ASTE1-208ENST00000514044 2504 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
HMGA1P17096 AC099329.2-203ENST00000471537 3605 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
HMGA1P17096 MTRR-202ENST00000440940 3215 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
HMGA1P17096 RFX4-201ENST00000229387 3378 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
HMGA1P17096 SCARNA15-201ENST00000607520 4325 ntBASIC5.19□□□□□ -1.58
HMGA1P17096 RRP15-201ENST00000366932 7771 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
HMGA1P17096 UACA-211ENST00000560441 4723 ntAPPRIS ALT2 TSL 5 BASIC5.19□□□□□ -1.58
HMGA1P17096 LINC02355-201ENST00000503100 2520 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
HMGA1P17096 STAU2-210ENST00000521210 1950 ntTSL 2 BASIC5.19□□□□□ -1.58
HMGA1P17096 OR8A1-201ENST00000284287 1146 ntAPPRIS P1 BASIC5.19□□□□□ -1.58
HMGA1P17096 LST1-207ENST00000376092 285 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
HMGA1P17096 LRRC37BP1-201ENST00000398851 714 ntBASIC5.19□□□□□ -1.58
HMGA1P17096 RN7SKP100-201ENST00000411258 284 ntBASIC5.19□□□□□ -1.58
HMGA1P17096 AL354956.1-201ENST00000424487 467 ntTSL 5 BASIC5.19□□□□□ -1.58
HMGA1P17096 AL590723.1-201ENST00000426030 629 ntTSL 5 BASIC5.19□□□□□ -1.58
HMGA1P17096 SLC8A1-AS1-205ENST00000435515 497 ntTSL 3 BASIC5.19□□□□□ -1.58
HMGA1P17096 Z73495.1-201ENST00000444982 147 ntTSL 3 BASIC5.19□□□□□ -1.58
HMGA1P17096 RPS17P2-201ENST00000461663 408 ntBASIC5.19□□□□□ -1.58
HMGA1P17096 AC108751.3-201ENST00000461814 1020 ntBASIC5.19□□□□□ -1.58
HMGA1P17096 F11-AS1-201ENST00000505103 1178 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
HMGA1P17096 FGB-207ENST00000509493 1164 ntTSL 5 BASIC5.19□□□□□ -1.58
HMGA1P17096 LINC01030-201ENST00000517505 738 ntTSL 3 BASIC5.19□□□□□ -1.58
HMGA1P17096 AC104257.1-202ENST00000524275 884 ntTSL 3 BASIC5.19□□□□□ -1.58
HMGA1P17096 AC008250.1-201ENST00000539874 522 ntTSL 3 BASIC5.19□□□□□ -1.58
HMGA1P17096 AC068789.1-201ENST00000547942 577 ntTSL 2 BASIC5.19□□□□□ -1.58
HMGA1P17096 AC124784.1-201ENST00000552426 571 ntTSL 3 BASIC5.19□□□□□ -1.58
HMGA1P17096 LINC02319-201ENST00000555852 349 ntTSL 3 BASIC5.19□□□□□ -1.58
HMGA1P17096 AC009562.1-202ENST00000558755 565 ntTSL 4 BASIC5.19□□□□□ -1.58
HMGA1P17096 AC092134.1-201ENST00000563690 800 ntTSL 3 BASIC5.19□□□□□ -1.58
HMGA1P17096 AC018558.3-201ENST00000567902 572 ntTSL 4 BASIC5.19□□□□□ -1.58
HMGA1P17096 TVP23CP2-201ENST00000571473 623 ntBASIC5.19□□□□□ -1.58
HMGA1P17096 MIR4330-201ENST00000579077 105 ntBASIC5.19□□□□□ -1.58
HMGA1P17096 AC091042.1-201ENST00000579213 173 ntBASIC5.19□□□□□ -1.58
HMGA1P17096 MIR4270-201ENST00000581799 70 ntBASIC5.19□□□□□ -1.58
HMGA1P17096 AL161616.1-201ENST00000611867 286 ntBASIC5.19□□□□□ -1.58
HMGA1P17096 ECM1P2-201ENST00000503354 1577 ntBASIC5.19□□□□□ -1.58
HMGA1P17096 MMP13-201ENST00000260302 2716 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
HMGA1P17096 SMNDC1-202ENST00000369603 4341 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
HMGA1P17096 EXO1-201ENST00000348581 3192 ntAPPRIS P3 TSL 1 (best) BASIC5.19□□□□□ -1.58
HMGA1P17096 AC139713.2-209ENST00000509873 1303 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
HMGA1P17096 LINC01204-202ENST00000435394 2214 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
HMGA1P17096 MKI67-201ENST00000368653 11417 ntAPPRIS ALT2 TSL 2 BASIC5.19□□□□□ -1.58
HMGA1P17096 ZNF891-201ENST00000537226 15455 ntAPPRIS P1 TSL 2 BASIC5.19□□□□□ -1.58
HMGA1P17096 AC018765.1-201ENST00000623357 3446 ntBASIC5.19□□□□□ -1.58
HMGA1P17096 FRMD6-205ENST00000554167 4176 ntTSL 2 BASIC5.19□□□□□ -1.58
HMGA1P17096 POF1B-201ENST00000262753 3941 ntAPPRIS P3 TSL 1 (best) BASIC5.18□□□□□ -1.58
HMGA1P17096 PLS3-201ENST00000289290 2277 ntTSL 2 BASIC5.18□□□□□ -1.58
HMGA1P17096 RAD17-201ENST00000282891 2135 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
HMGA1P17096 THOC2-220ENST00000618150 3211 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
HMGA1P17096 KSR2-201ENST00000339824 17726 ntAPPRIS P1 TSL 5 BASIC5.18□□□□□ -1.58
HMGA1P17096 FABP2-201ENST00000274024 2478 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
HMGA1P17096 GTPBP10-201ENST00000222511 7531 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
HMGA1P17096 MAP3K19-204ENST00000392915 5030 ntAPPRIS P3 TSL 5 BASIC5.18□□□□□ -1.58
HMGA1P17096 MYO5A-209ENST00000553916 5989 ntTSL 5 BASIC5.18□□□□□ -1.58
HMGA1P17096 CDON-206ENST00000531738 5803 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
HMGA1P17096 SMARCA2-206ENST00000382185 1584 ntTSL 2 BASIC5.18□□□□□ -1.58
HMGA1P17096 SLMAP-206ENST00000428312 4132 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
HMGA1P17096 SERPINB7-202ENST00000398019 2203 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
HMGA1P17096 CCR2-202ENST00000400888 2232 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
HMGA1P17096 SRSF11-201ENST00000370949 3034 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
HMGA1P17096 HIST1H2BD-201ENST00000289316 789 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
HMGA1P17096 AL359378.2-201ENST00000415575 746 ntTSL 2 BASIC5.18□□□□□ -1.58
HMGA1P17096 HYALP1-201ENST00000417674 1279 ntBASIC5.18□□□□□ -1.58
HMGA1P17096 AC009506.2-201ENST00000420635 840 ntBASIC5.18□□□□□ -1.58
HMGA1P17096 HNRNPA1P29-201ENST00000426409 879 ntBASIC5.18□□□□□ -1.58
HMGA1P17096 TRIM31-AS1-204ENST00000440874 549 ntTSL 3 BASIC5.18□□□□□ -1.58
HMGA1P17096 AC011753.3-201ENST00000443436 406 ntBASIC5.18□□□□□ -1.58
HMGA1P17096 AC017101.1-201ENST00000453665 571 ntTSL 4 BASIC5.18□□□□□ -1.58
HMGA1P17096 AL513533.1-201ENST00000453728 415 ntBASIC5.18□□□□□ -1.58
HMGA1P17096 AURKAPS2-201ENST00000454983 333 ntBASIC5.18□□□□□ -1.58
HMGA1P17096 AC104831.1-201ENST00000470024 444 ntTSL 3 BASIC5.18□□□□□ -1.58
HMGA1P17096 AC008897.1-201ENST00000494006 347 ntBASIC5.18□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 104.6 ms