Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 EIF4EBP2P3-201ENST00000403144 334 ntBASIC1.61□□□□□ -2.15
SYNE1Q8NF91 C2orf73-203ENST00000405749 576 ntTSL 4 BASIC1.61□□□□□ -2.15
SYNE1Q8NF91 AC078814.2-201ENST00000552996 535 ntTSL 4 BASIC1.61□□□□□ -2.15
SYNE1Q8NF91 AC073964.1-201ENST00000558938 308 ntTSL 3 BASIC1.61□□□□□ -2.15
SYNE1Q8NF91 LINC02188-201ENST00000562064 550 ntTSL 4 BASIC1.61□□□□□ -2.15
SYNE1Q8NF91 LINC01904-201ENST00000564872 861 ntTSL 1 (best) BASIC1.61□□□□□ -2.15
SYNE1Q8NF91 AL590392.1-201ENST00000604960 446 ntBASIC1.61□□□□□ -2.15
SYNE1Q8NF91 AC069542.2-201ENST00000624816 216 ntBASIC1.61□□□□□ -2.15
SYNE1Q8NF91 WISP3-211ENST00000639360 1026 ntTSL 5 BASIC1.61□□□□□ -2.15
SYNE1Q8NF91 LINC01958-201ENST00000637749 1941 ntTSL 5 BASIC1.61□□□□□ -2.15
SYNE1Q8NF91 A1CF-206ENST00000395489 9517 ntTSL 2 BASIC1.6□□□□□ -2.15
SYNE1Q8NF91 PRNCR1-201ENST00000635449 12727 ntBASIC1.6□□□□□ -2.15
SYNE1Q8NF91 TRPC4-202ENST00000355779 2784 ntTSL 1 (best) BASIC1.6□□□□□ -2.15
SYNE1Q8NF91 HSPA8P14-201ENST00000552265 1805 ntBASIC1.6□□□□□ -2.15
SYNE1Q8NF91 Z98755.1-201ENST00000407015 1384 ntBASIC1.6□□□□□ -2.15
SYNE1Q8NF91 MUC4-215ENST00000475231 16273 ntAPPRIS ALT2 TSL 5 BASIC1.6□□□□□ -2.15
SYNE1Q8NF91 MKL2-202ENST00000571589 8799 ntAPPRIS ALT2 TSL 2 BASIC1.6□□□□□ -2.15
SYNE1Q8NF91 RNF145-201ENST00000274542 3364 ntTSL 2 BASIC1.6□□□□□ -2.15
SYNE1Q8NF91 IL1RL1-201ENST00000233954 2058 ntAPPRIS P1 TSL 1 (best) BASIC1.6□□□□□ -2.15
SYNE1Q8NF91 G3BP1-202ENST00000394123 10240 ntAPPRIS P1 TSL 1 (best) BASIC1.6□□□□□ -2.15
SYNE1Q8NF91 MAP3K7-203ENST00000369327 4558 ntTSL 1 (best) BASIC1.6□□□□□ -2.15
SYNE1Q8NF91 N4BP2L2-201ENST00000267068 9427 ntAPPRIS P1 TSL 1 (best) BASIC1.6□□□□□ -2.15
SYNE1Q8NF91 ALB-219ENST00000621085 1418 ntTSL 5 BASIC1.6□□□□□ -2.15
SYNE1Q8NF91 PLS3-201ENST00000289290 2277 ntTSL 2 BASIC1.6□□□□□ -2.15
SYNE1Q8NF91 LIX1-AS1-201ENST00000504578 1793 ntTSL 5 BASIC1.6□□□□□ -2.15
SYNE1Q8NF91 CFAP126-201ENST00000367974 774 ntAPPRIS P1 TSL 2 BASIC1.6□□□□□ -2.15
SYNE1Q8NF91 RN7SKP248-201ENST00000516278 305 ntBASIC1.6□□□□□ -2.15
SYNE1Q8NF91 PMP2-202ENST00000519260 1264 ntTSL 1 (best) BASIC1.6□□□□□ -2.15
SYNE1Q8NF91 AP001574.1-201ENST00000519566 546 ntTSL 4 BASIC1.6□□□□□ -2.15
SYNE1Q8NF91 AC022874.1-201ENST00000526382 550 ntTSL 3 BASIC1.6□□□□□ -2.15
SYNE1Q8NF91 TRPT1-216ENST00000546133 382 ntTSL 2 BASIC1.6□□□□□ -2.15
SYNE1Q8NF91 SRD5A3-AS1-209ENST00000598819 552 ntTSL 5 BASIC1.6□□□□□ -2.15
SYNE1Q8NF91 HIRAP1-201ENST00000605318 787 ntBASIC1.6□□□□□ -2.15
SYNE1Q8NF91 AL023583.1-201ENST00000607518 1143 ntBASIC1.6□□□□□ -2.15
SYNE1Q8NF91 AC099654.2-201ENST00000433031 1980 ntBASIC1.6□□□□□ -2.15
SYNE1Q8NF91 PCLO-206ENST00000437081 3786 ntTSL 1 (best) BASIC1.6□□□□□ -2.15
SYNE1Q8NF91 AP005432.1-201ENST00000580891 3485 ntBASIC1.6□□□□□ -2.15
SYNE1Q8NF91 SEC24D-211ENST00000511481 2626 ntTSL 1 (best) BASIC1.6□□□□□ -2.15
SYNE1Q8NF91 SGO1-205ENST00000419233 1582 ntTSL 1 (best) BASIC1.6□□□□□ -2.15
SYNE1Q8NF91 AC083843.2-201ENST00000568248 6253 ntBASIC1.6□□□□□ -2.15
SYNE1Q8NF91 OR52E5-201ENST00000610445 2244 ntAPPRIS P1 BASIC1.6□□□□□ -2.15
SYNE1Q8NF91 AC126755.2-208ENST00000327792 462 ntBASIC1.6□□□□□ -2.15
SYNE1Q8NF91 AC138969.1-213ENST00000331436 462 ntBASIC1.6□□□□□ -2.15
SYNE1Q8NF91 MRRF-207ENST00000373729 870 ntTSL 3 BASIC1.6□□□□□ -2.15
SYNE1Q8NF91 RNA5SP113-201ENST00000410486 84 ntBASIC1.6□□□□□ -2.15
SYNE1Q8NF91 AL353608.2-201ENST00000425587 340 ntTSL 5 BASIC1.6□□□□□ -2.15
SYNE1Q8NF91 SLC36A1-202ENST00000429484 977 ntTSL 1 (best) BASIC1.6□□□□□ -2.15
SYNE1Q8NF91 CASP12-204ENST00000433738 709 ntTSL 1 (best) BASIC1.6□□□□□ -2.15
SYNE1Q8NF91 AC008072.1-201ENST00000434254 824 ntBASIC1.6□□□□□ -2.15
SYNE1Q8NF91 AC239367.2-201ENST00000447309 705 ntBASIC1.6□□□□□ -2.15
SYNE1Q8NF91 MRPS33-209ENST00000496958 688 ntAPPRIS P1 TSL 3 BASIC1.6□□□□□ -2.15
SYNE1Q8NF91 RNA5SP116-201ENST00000516132 98 ntBASIC1.6□□□□□ -2.15
SYNE1Q8NF91 LINC02055-205ENST00000521090 774 ntTSL 3 BASIC1.6□□□□□ -2.15
SYNE1Q8NF91 AC015720.2-201ENST00000567709 334 ntBASIC1.6□□□□□ -2.15
SYNE1Q8NF91 TVP23CP2-201ENST00000571473 623 ntBASIC1.6□□□□□ -2.15
SYNE1Q8NF91 MIR4480-201ENST00000582492 71 ntBASIC1.6□□□□□ -2.15
SYNE1Q8NF91 AC068790.4-201ENST00000602474 263 ntBASIC1.6□□□□□ -2.15
SYNE1Q8NF91 MTTP-203ENST00000457717 4092 ntAPPRIS P1 TSL 5 BASIC1.6□□□□□ -2.15
SYNE1Q8NF91 ZFPM2-203ENST00000517361 3300 ntTSL 2 BASIC1.6□□□□□ -2.15
SYNE1Q8NF91 PIAS2-204ENST00000585916 11075 ntAPPRIS P1 TSL 1 (best) BASIC1.6□□□□□ -2.15
SYNE1Q8NF91 DECR1-215ENST00000522161 1766 ntAPPRIS ALT2 TSL 2 BASIC1.6□□□□□ -2.15
SYNE1Q8NF91 AC097461.1-201ENST00000568928 2821 ntBASIC1.6□□□□□ -2.15
SYNE1Q8NF91 RDH10-AS1-201ENST00000514599 3261 ntTSL 2 BASIC1.6□□□□□ -2.15
SYNE1Q8NF91 HYKK-206ENST00000569878 4097 ntAPPRIS P1 TSL 5 BASIC1.6□□□□□ -2.15
SYNE1Q8NF91 USP9X-201ENST00000324545 12401 ntTSL 5 BASIC1.6□□□□□ -2.15
SYNE1Q8NF91 CACNB4-229ENST00000636617 5757 ntTSL 5 BASIC1.6□□□□□ -2.15
SYNE1Q8NF91 AC100871.1-201ENST00000507871 1456 ntBASIC1.6□□□□□ -2.15
SYNE1Q8NF91 AL121886.1-201ENST00000358609 435 ntBASIC1.6□□□□□ -2.15
SYNE1Q8NF91 AC002075.1-201ENST00000457396 676 ntBASIC1.6□□□□□ -2.15
SYNE1Q8NF91 CENPK-210ENST00000510354 1124 ntTSL 5 BASIC1.6□□□□□ -2.15
SYNE1Q8NF91 CDKN3-206ENST00000541304 1070 ntTSL 2 BASIC1.6□□□□□ -2.15
SYNE1Q8NF91 LSM3P2-201ENST00000551246 273 ntBASIC1.6□□□□□ -2.15
SYNE1Q8NF91 AL133485.1-201ENST00000555966 392 ntTSL 2 BASIC1.6□□□□□ -2.15
SYNE1Q8NF91 AC069029.1-201ENST00000558736 263 ntTSL 2 BASIC1.6□□□□□ -2.15
SYNE1Q8NF91 AC093765.1-201ENST00000603758 881 ntBASIC1.6□□□□□ -2.15
SYNE1Q8NF91 NSD1-204ENST00000439151 12892 ntAPPRIS P1 TSL 1 (best) BASIC1.6□□□□□ -2.15
SYNE1Q8NF91 ZNF415-201ENST00000243643 2270 ntAPPRIS P3 TSL 1 (best) BASIC1.6□□□□□ -2.15
SYNE1Q8NF91 MAP9-208ENST00000515654 2044 ntTSL 5 BASIC1.6□□□□□ -2.15
SYNE1Q8NF91 KIF2A-203ENST00000407818 2315 ntTSL 1 (best) BASIC1.6□□□□□ -2.15
SYNE1Q8NF91 SNORA70.9-201ENST00000384370 135 ntBASIC1.6□□□□□ -2.15
SYNE1Q8NF91 RNGTTP1-201ENST00000420965 728 ntBASIC1.6□□□□□ -2.15
SYNE1Q8NF91 ARPP21-218ENST00000438071 1103 ntTSL 3 BASIC1.6□□□□□ -2.15
SYNE1Q8NF91 AL451063.1-201ENST00000450164 1133 ntBASIC1.6□□□□□ -2.15
SYNE1Q8NF91 RSRC1-207ENST00000475278 1195 ntTSL 5 BASIC1.6□□□□□ -2.15
SYNE1Q8NF91 AC107926.1-201ENST00000581673 621 ntTSL 3 BASIC1.6□□□□□ -2.15
SYNE1Q8NF91 AC010857.1-201ENST00000606398 594 ntBASIC1.6□□□□□ -2.15
SYNE1Q8NF91 MIR6758-201ENST00000620653 63 ntBASIC1.6□□□□□ -2.15
SYNE1Q8NF91 AL161637.1-201ENST00000622380 412 ntBASIC1.6□□□□□ -2.15
SYNE1Q8NF91 ZNF733P-202ENST00000444809 1573 ntBASIC1.6□□□□□ -2.15
SYNE1Q8NF91 SFTPD-AS1-201ENST00000608229 5001 ntBASIC1.6□□□□□ -2.15
SYNE1Q8NF91 LINC01720-201ENST00000413356 2216 ntTSL 1 (best) BASIC1.6□□□□□ -2.15
SYNE1Q8NF91 GABRA1-215ENST00000636573 2262 ntAPPRIS P1 TSL 5 BASIC1.6□□□□□ -2.15
SYNE1Q8NF91 LRIG2-201ENST00000361127 11555 ntAPPRIS P1 TSL 1 (best) BASIC1.6□□□□□ -2.15
SYNE1Q8NF91 MTUS1-216ENST00000519263 4089 ntTSL 2 BASIC1.6□□□□□ -2.15
SYNE1Q8NF91 ADGRL3-210ENST00000508946 4758 ntAPPRIS ALT2 TSL 5 BASIC1.6□□□□□ -2.15
SYNE1Q8NF91 TMTC2-204ENST00000549919 6211 ntTSL 1 (best) BASIC1.6□□□□□ -2.15
SYNE1Q8NF91 BPIFC-201ENST00000300399 1980 ntAPPRIS P1 TSL 1 (best) BASIC1.6□□□□□ -2.15
SYNE1Q8NF91 CAB39L-206ENST00000410043 1627 ntAPPRIS P1 TSL 1 (best) BASIC1.6□□□□□ -2.15
SYNE1Q8NF91 MIR192-201ENST00000384915 110 ntBASIC1.6□□□□□ -2.15
SYNE1Q8NF91 MIR600-201ENST00000385007 98 ntBASIC1.6□□□□□ -2.15
Retrieved 100 of 98,524 protein–RNA pairs in 69.9 ms