Protein–RNA interactions for Protein: P48742

LHX1, LIM/homeobox protein Lhx1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX1P48742 NLRP3P1-201ENST00000622303 1785 ntBASIC5.6□□□□□ -1.51
LHX1P48742 SCN2A-203ENST00000375437 8792 ntAPPRIS ALT1 TSL 5 BASIC5.6□□□□□ -1.51
LHX1P48742 AL121839.2-201ENST00000565058 6943 ntBASIC5.6□□□□□ -1.51
LHX1P48742 AC016745.2-201ENST00000608834 3443 ntBASIC5.6□□□□□ -1.51
LHX1P48742 FILIP1-203ENST00000393004 7807 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
LHX1P48742 CASP1-208ENST00000527979 1521 ntTSL 5 BASIC5.59□□□□□ -1.51
LHX1P48742 PANDAR-201ENST00000629595 1506 ntBASIC5.59□□□□□ -1.51
LHX1P48742 XPNPEP3-201ENST00000357137 7988 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
LHX1P48742 NRCAM-210ENST00000425651 3915 ntAPPRIS ALT2 TSL 1 (best) BASIC5.59□□□□□ -1.51
LHX1P48742 RNASE9-201ENST00000338904 1049 ntAPPRIS P3 TSL 1 (best) BASIC5.59□□□□□ -1.51
LHX1P48742 OR2B3-201ENST00000377173 1106 ntAPPRIS P1 BASIC5.59□□□□□ -1.51
LHX1P48742 NPM1P37-201ENST00000403105 874 ntBASIC5.59□□□□□ -1.51
LHX1P48742 DNAJA1P4-201ENST00000406473 1166 ntBASIC5.59□□□□□ -1.51
LHX1P48742 NACAP7-201ENST00000407371 609 ntBASIC5.59□□□□□ -1.51
LHX1P48742 MTND3P20-201ENST00000407663 186 ntBASIC5.59□□□□□ -1.51
LHX1P48742 PRR21-201ENST00000408934 1170 ntAPPRIS P1 BASIC5.59□□□□□ -1.51
LHX1P48742 RN7SKP213-201ENST00000410746 298 ntBASIC5.59□□□□□ -1.51
LHX1P48742 RN7SKP126-201ENST00000411143 300 ntBASIC5.59□□□□□ -1.51
LHX1P48742 MTATP6P19-201ENST00000413797 659 ntBASIC5.59□□□□□ -1.51
LHX1P48742 RPL23AP27-201ENST00000415161 451 ntBASIC5.59□□□□□ -1.51
LHX1P48742 RCC2P2-201ENST00000422174 918 ntBASIC5.59□□□□□ -1.51
LHX1P48742 RPS4XP16-201ENST00000427198 791 ntBASIC5.59□□□□□ -1.51
LHX1P48742 CLUHP1-201ENST00000435012 1190 ntBASIC5.59□□□□□ -1.51
LHX1P48742 AF127577.2-201ENST00000436429 824 ntTSL 3 BASIC5.59□□□□□ -1.51
LHX1P48742 RAB9AP5-201ENST00000437794 597 ntBASIC5.59□□□□□ -1.51
LHX1P48742 RPS29P10-201ENST00000439197 166 ntBASIC5.59□□□□□ -1.51
LHX1P48742 RAB9AP2-201ENST00000443911 597 ntBASIC5.59□□□□□ -1.51
LHX1P48742 C2orf80-207ENST00000453017 722 ntTSL 3 BASIC5.59□□□□□ -1.51
LHX1P48742 TAAR4P-201ENST00000454843 1039 ntBASIC5.59□□□□□ -1.51
LHX1P48742 RPS12P31-201ENST00000491419 398 ntBASIC5.59□□□□□ -1.51
LHX1P48742 AC138956.1-201ENST00000508187 504 ntTSL 3 BASIC5.59□□□□□ -1.51
LHX1P48742 AC006427.1-201ENST00000514359 712 ntBASIC5.59□□□□□ -1.51
LHX1P48742 RPL26L1-203ENST00000519239 679 ntAPPRIS P1 TSL 2 BASIC5.59□□□□□ -1.51
LHX1P48742 BMPR1APS2-201ENST00000527904 1012 ntBASIC5.59□□□□□ -1.51
LHX1P48742 AP006259.1-201ENST00000528520 561 ntTSL 2 BASIC5.59□□□□□ -1.51
LHX1P48742 RNASE9-204ENST00000553541 1136 ntAPPRIS P3 TSL 1 (best) BASIC5.59□□□□□ -1.51
LHX1P48742 RNASE9-206ENST00000554964 1101 ntAPPRIS P3 TSL 1 (best) BASIC5.59□□□□□ -1.51
LHX1P48742 RNASE9-208ENST00000556208 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC5.59□□□□□ -1.51
LHX1P48742 RNASE9-210ENST00000557209 1137 ntAPPRIS ALT2 TSL 1 (best) BASIC5.59□□□□□ -1.51
LHX1P48742 AC051619.2-201ENST00000559063 397 ntBASIC5.59□□□□□ -1.51
LHX1P48742 AC007495.2-201ENST00000562822 459 ntTSL 3 BASIC5.59□□□□□ -1.51
LHX1P48742 GS1-279B7.1-203ENST00000565520 609 ntTSL 5 BASIC5.59□□□□□ -1.51
LHX1P48742 MOCS2-209ENST00000582677 741 ntTSL 5 BASIC5.59□□□□□ -1.51
LHX1P48742 AC006504.5-212ENST00000587188 746 ntTSL 3 BASIC5.59□□□□□ -1.51
LHX1P48742 AC011447.4-201ENST00000587562 111 ntBASIC5.59□□□□□ -1.51
LHX1P48742 AC010320.2-203ENST00000601745 574 ntTSL 4 BASIC5.59□□□□□ -1.51
LHX1P48742 RPSAP73-201ENST00000614820 330 ntBASIC5.59□□□□□ -1.51
LHX1P48742 AL590410.1-201ENST00000617925 333 ntBASIC5.59□□□□□ -1.51
LHX1P48742 SHMT1-211ENST00000618902 378 ntTSL 5 BASIC5.59□□□□□ -1.51
LHX1P48742 ZNF33A-202ENST00000374618 6122 ntTSL 4 BASIC5.59□□□□□ -1.51
LHX1P48742 DOCK10-202ENST00000409592 7288 ntAPPRIS ALT2 TSL 1 (best) BASIC5.59□□□□□ -1.51
LHX1P48742 AC093909.5-201ENST00000621839 1799 ntBASIC5.59□□□□□ -1.51
LHX1P48742 TCF4-268ENST00000629387 3789 ntAPPRIS ALT1 TSL 5 BASIC5.59□□□□□ -1.52
LHX1P48742 ZNF83-203ENST00000541777 3743 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.52
LHX1P48742 CFAP47-202ENST00000313548 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC5.58□□□□□ -1.52
LHX1P48742 ZNF850-203ENST00000614887 7625 ntAPPRIS ALT2 TSL 1 (best) BASIC5.58□□□□□ -1.52
LHX1P48742 TRPC4-201ENST00000338947 2912 ntTSL 5 BASIC5.58□□□□□ -1.52
LHX1P48742 LRIT3-201ENST00000327908 3781 ntTSL 2 BASIC5.58□□□□□ -1.52
LHX1P48742 C9orf135-AS1-201ENST00000439418 1375 ntTSL 2 BASIC5.58□□□□□ -1.52
LHX1P48742 AC005261.6-201ENST00000623072 1387 ntBASIC5.58□□□□□ -1.52
LHX1P48742 GABRA1-215ENST00000636573 2262 ntAPPRIS P1 TSL 5 BASIC5.58□□□□□ -1.52
LHX1P48742 RNMT-202ENST00000383314 6250 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
LHX1P48742 CASC19-201ENST00000500112 5735 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
LHX1P48742 OR9G4-201ENST00000302957 984 ntBASIC5.58□□□□□ -1.52
LHX1P48742 RN7SKP145-201ENST00000363291 303 ntBASIC5.58□□□□□ -1.52
LHX1P48742 RNA5SP90-201ENST00000364801 99 ntBASIC5.58□□□□□ -1.52
LHX1P48742 C1orf194-204ENST00000369949 731 ntTSL 2 BASIC5.58□□□□□ -1.52
LHX1P48742 PRKACB-203ENST00000370684 869 ntTSL 5 BASIC5.58□□□□□ -1.52
LHX1P48742 SNORA70-201ENST00000384436 135 ntBASIC5.58□□□□□ -1.52
LHX1P48742 SNORA48.4-201ENST00000391089 134 ntBASIC5.58□□□□□ -1.52
LHX1P48742 MIR1182-201ENST00000408363 97 ntBASIC5.58□□□□□ -1.52
LHX1P48742 AC211486.3-201ENST00000412694 621 ntBASIC5.58□□□□□ -1.52
LHX1P48742 CBX1P3-201ENST00000413296 527 ntBASIC5.58□□□□□ -1.52
LHX1P48742 ACAP2-IT1-201ENST00000419899 690 ntTSL 3 BASIC5.58□□□□□ -1.52
LHX1P48742 RPL7AP49-201ENST00000429522 581 ntBASIC5.58□□□□□ -1.52
LHX1P48742 AL591438.1-201ENST00000433508 581 ntBASIC5.58□□□□□ -1.52
LHX1P48742 AL392003.1-201ENST00000434394 243 ntBASIC5.58□□□□□ -1.52
LHX1P48742 RN7SL515P-201ENST00000463999 297 ntBASIC5.58□□□□□ -1.52
LHX1P48742 RPSAP50-201ENST00000481955 852 ntBASIC5.58□□□□□ -1.52
LHX1P48742 AC109462.1-201ENST00000491087 368 ntBASIC5.58□□□□□ -1.52
LHX1P48742 ATG10-AS1-201ENST00000504846 648 ntBASIC5.58□□□□□ -1.52
LHX1P48742 AL133372.2-203ENST00000508469 922 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
LHX1P48742 AC147055.3-201ENST00000510547 851 ntBASIC5.58□□□□□ -1.52
LHX1P48742 AC010425.1-201ENST00000511734 554 ntTSL 4 BASIC5.58□□□□□ -1.52
LHX1P48742 EIF3KP3-201ENST00000514461 639 ntBASIC5.58□□□□□ -1.52
LHX1P48742 OR11J2P-201ENST00000555298 907 ntBASIC5.58□□□□□ -1.52
LHX1P48742 AC044860.2-201ENST00000561005 179 ntBASIC5.58□□□□□ -1.52
LHX1P48742 AC013652.1-202ENST00000561058 570 ntTSL 4 BASIC5.58□□□□□ -1.52
LHX1P48742 AC114947.2-201ENST00000565748 2125 ntBASIC5.58□□□□□ -1.52
LHX1P48742 UBL5-207ENST00000590068 390 ntAPPRIS P1 TSL 5 BASIC5.58□□□□□ -1.52
LHX1P48742 FAM60CP-201ENST00000591086 664 ntBASIC5.58□□□□□ -1.52
LHX1P48742 AC006116.3-201ENST00000592968 361 ntBASIC5.58□□□□□ -1.52
LHX1P48742 DUXB-201ENST00000633875 1079 ntAPPRIS P1 TSL 3 BASIC5.58□□□□□ -1.52
LHX1P48742 AL034549.2-201ENST00000618285 3373 ntBASIC5.58□□□□□ -1.52
LHX1P48742 HDAC9-203ENST00000406072 4102 ntTSL 5 BASIC5.58□□□□□ -1.52
LHX1P48742 ADGRL2-222ENST00000627151 5789 ntTSL 5 BASIC5.58□□□□□ -1.52
LHX1P48742 AC092070.2-203ENST00000598377 3644 ntBASIC5.58□□□□□ -1.52
LHX1P48742 UACA-211ENST00000560441 4723 ntAPPRIS ALT2 TSL 5 BASIC5.58□□□□□ -1.52
LHX1P48742 NSD1-202ENST00000354179 12195 ntTSL 5 BASIC5.58□□□□□ -1.52
LHX1P48742 AP005212.5-201ENST00000577614 3505 ntTSL 5 BASIC5.58□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 101.8 ms