Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 MTND4P2-201ENST00000507767 1203 ntBASIC6.68□□□□□ -1.34
COL6A1P12109 AC107391.1-201ENST00000514966 412 ntTSL 2 BASIC6.68□□□□□ -1.34
COL6A1P12109 AP001085.1-201ENST00000524441 639 ntTSL 2 BASIC6.68□□□□□ -1.34
COL6A1P12109 OR10V3P-201ENST00000525712 725 ntBASIC6.68□□□□□ -1.34
COL6A1P12109 RPA2P3-201ENST00000533268 770 ntBASIC6.68□□□□□ -1.34
COL6A1P12109 MIR670HG-201ENST00000533531 897 ntTSL 1 (best) BASIC6.68□□□□□ -1.34
COL6A1P12109 PTER-205ENST00000535784 1203 ntAPPRIS P1 TSL 1 (best) BASIC6.68□□□□□ -1.34
COL6A1P12109 AC073916.1-201ENST00000545095 130 ntBASIC6.68□□□□□ -1.34
COL6A1P12109 ZFAND6-204ENST00000558087 909 ntAPPRIS P1 TSL 5 BASIC6.68□□□□□ -1.34
COL6A1P12109 DPPA2P4-201ENST00000563717 878 ntBASIC6.68□□□□□ -1.34
COL6A1P12109 AC122134.1-201ENST00000565664 1104 ntBASIC6.68□□□□□ -1.34
COL6A1P12109 AC026992.2-201ENST00000570122 766 ntTSL 5 BASIC6.68□□□□□ -1.34
COL6A1P12109 AC027229.1-201ENST00000583887 253 ntBASIC6.68□□□□□ -1.34
COL6A1P12109 AC005702.2-201ENST00000591035 481 ntAPPRIS P1 TSL 3 BASIC6.68□□□□□ -1.34
COL6A1P12109 HCG18-243ENST00000602498 327 ntTSL 3 BASIC6.68□□□□□ -1.34
COL6A1P12109 AC015849.2-201ENST00000605738 409 ntBASIC6.68□□□□□ -1.34
COL6A1P12109 AC021851.1-201ENST00000608537 1082 ntBASIC6.68□□□□□ -1.34
COL6A1P12109 AC008121.2-201ENST00000614647 523 ntBASIC6.68□□□□□ -1.34
COL6A1P12109 AC009318.3-201ENST00000616916 503 ntBASIC6.68□□□□□ -1.34
COL6A1P12109 ATL2-217ENST00000629272 1242 ntTSL 5 BASIC6.68□□□□□ -1.34
COL6A1P12109 AC245187.2-201ENST00000631520 475 ntTSL 3 BASIC6.68□□□□□ -1.34
COL6A1P12109 AC099654.6-201ENST00000636487 512 ntBASIC6.68□□□□□ -1.34
COL6A1P12109 AC087565.3-203ENST00000641018 837 ntBASIC6.68□□□□□ -1.34
COL6A1P12109 KALRN-204ENST00000360013 10806 ntAPPRIS P5 TSL 5 BASIC6.68□□□□□ -1.34
COL6A1P12109 ZNF490-201ENST00000311437 4237 ntAPPRIS P1 TSL 1 (best) BASIC6.68□□□□□ -1.34
COL6A1P12109 MARCH6-201ENST00000274140 9569 ntAPPRIS P1 TSL 1 (best) BASIC6.68□□□□□ -1.34
COL6A1P12109 NR5A2-203ENST00000367362 5086 ntAPPRIS P3 TSL 1 (best) BASIC6.68□□□□□ -1.34
COL6A1P12109 PSG5-210ENST00000599812 1884 ntAPPRIS P1 TSL 1 (best) BASIC6.68□□□□□ -1.34
COL6A1P12109 NBPF25P-202ENST00000619932 3827 ntTSL 2 BASIC6.68□□□□□ -1.34
COL6A1P12109 EEF1A1P24-201ENST00000451469 1378 ntBASIC6.68□□□□□ -1.34
COL6A1P12109 MAPK10-341ENST00000641657 3860 ntAPPRIS P2 BASIC6.68□□□□□ -1.34
COL6A1P12109 ZNF780A-203ENST00000450241 7500 ntTSL 2 BASIC6.68□□□□□ -1.34
COL6A1P12109 FRMD5-211ENST00000618556 5059 ntTSL 5 BASIC6.68□□□□□ -1.34
COL6A1P12109 USP37-203ENST00000415516 4516 ntTSL 1 (best) BASIC6.68□□□□□ -1.34
COL6A1P12109 AC005618.1-201ENST00000606901 3148 ntBASIC6.67□□□□□ -1.34
COL6A1P12109 AC099786.3-201ENST00000565735 1410 ntBASIC6.67□□□□□ -1.34
COL6A1P12109 XRCC5-201ENST00000392132 3428 ntAPPRIS P1 TSL 1 (best) BASIC6.67□□□□□ -1.34
COL6A1P12109 VNN3-211ENST00000509351 1700 ntTSL 1 (best) BASIC6.67□□□□□ -1.34
COL6A1P12109 FAM19A1-201ENST00000478136 2014 ntAPPRIS P1 TSL 1 (best) BASIC6.67□□□□□ -1.34
COL6A1P12109 MEF2C-249ENST00000637481 6088 ntTSL 5 BASIC6.67□□□□□ -1.34
COL6A1P12109 AC125793.1-201ENST00000565238 1493 ntTSL 1 (best) BASIC6.67□□□□□ -1.34
COL6A1P12109 TEK-202ENST00000406359 3935 ntTSL 2 BASIC6.67□□□□□ -1.34
COL6A1P12109 CYP3A5-202ENST00000339843 3320 ntTSL 1 (best) BASIC6.67□□□□□ -1.34
COL6A1P12109 C9-201ENST00000263408 2713 ntAPPRIS P1 TSL 1 (best) BASIC6.67□□□□□ -1.34
COL6A1P12109 AL136531.3-201ENST00000624378 3658 ntBASIC6.67□□□□□ -1.34
COL6A1P12109 G6PC-201ENST00000253801 3096 ntAPPRIS P1 TSL 1 (best) BASIC6.67□□□□□ -1.34
COL6A1P12109 EFNA5-206ENST00000611503 4933 ntTSL 5 BASIC6.67□□□□□ -1.34
COL6A1P12109 ZC3H11A-202ENST00000367210 5877 ntAPPRIS P1 TSL 1 (best) BASIC6.67□□□□□ -1.34
COL6A1P12109 AC024587.1-201ENST00000505925 2157 ntBASIC6.67□□□□□ -1.34
COL6A1P12109 SYT14-207ENST00000629778 1860 ntAPPRIS ALT2 TSL 1 (best) BASIC6.67□□□□□ -1.34
COL6A1P12109 AC068870.3-201ENST00000625077 2536 ntBASIC6.67□□□□□ -1.34
COL6A1P12109 AC103591.2-201ENST00000265259 766 ntBASIC6.67□□□□□ -1.34
COL6A1P12109 PAGE2B-202ENST00000374974 456 ntTSL 5 BASIC6.67□□□□□ -1.34
COL6A1P12109 EQTN-201ENST00000380031 725 ntAPPRIS ALT2 TSL 1 (best) BASIC6.67□□□□□ -1.34
COL6A1P12109 RNU6-354P-201ENST00000383862 107 ntBASIC6.67□□□□□ -1.34
COL6A1P12109 RNU6-610P-201ENST00000384264 107 ntBASIC6.67□□□□□ -1.34
COL6A1P12109 SNORD65-201ENST00000391079 73 ntBASIC6.67□□□□□ -1.34
COL6A1P12109 AC064871.1-202ENST00000413954 382 ntTSL 5 BASIC6.67□□□□□ -1.34
COL6A1P12109 UBE2V1P9-201ENST00000414760 368 ntBASIC6.67□□□□□ -1.34
COL6A1P12109 AL031779.1-201ENST00000415663 330 ntBASIC6.67□□□□□ -1.34
COL6A1P12109 UBE2V1P14-201ENST00000415815 558 ntBASIC6.67□□□□□ -1.34
COL6A1P12109 AC090960.1-201ENST00000421072 306 ntBASIC6.67□□□□□ -1.34
COL6A1P12109 ISM1-AS1-201ENST00000431407 652 ntTSL 1 (best) BASIC6.67□□□□□ -1.34
COL6A1P12109 AL133465.1-201ENST00000432942 512 ntTSL 3 BASIC6.67□□□□□ -1.34
COL6A1P12109 AL355357.1-201ENST00000433531 417 ntTSL 2 BASIC6.67□□□□□ -1.34
COL6A1P12109 FABP5P3-201ENST00000437960 408 ntBASIC6.67□□□□□ -1.34
COL6A1P12109 EEF1B2P5-201ENST00000444820 548 ntBASIC6.67□□□□□ -1.34
COL6A1P12109 RPL7P55-201ENST00000450522 746 ntBASIC6.67□□□□□ -1.34
COL6A1P12109 CSN1S2AP-201ENST00000451783 779 ntTSL 1 (best) BASIC6.67□□□□□ -1.34
COL6A1P12109 RN7SL72P-201ENST00000460697 269 ntBASIC6.67□□□□□ -1.34
COL6A1P12109 AC026254.2-201ENST00000475295 371 ntBASIC6.67□□□□□ -1.34
COL6A1P12109 AL139147.1-201ENST00000502413 1156 ntTSL 2 BASIC6.67□□□□□ -1.34
COL6A1P12109 AC108866.1-203ENST00000504106 529 ntTSL 3 BASIC6.67□□□□□ -1.34
COL6A1P12109 AC068672.3-203ENST00000505166 311 ntTSL 3 BASIC6.67□□□□□ -1.34
COL6A1P12109 RNA5SP116-201ENST00000516132 98 ntBASIC6.67□□□□□ -1.34
COL6A1P12109 AC109466.1-214ENST00000522762 583 ntTSL 2 BASIC6.67□□□□□ -1.34
COL6A1P12109 MINCR-206ENST00000524335 499 ntTSL 2 BASIC6.67□□□□□ -1.34
COL6A1P12109 OR7E128P-201ENST00000532736 1024 ntBASIC6.67□□□□□ -1.34
COL6A1P12109 LINC02454-201ENST00000539116 589 ntTSL 4 BASIC6.67□□□□□ -1.34
COL6A1P12109 AC008147.3-201ENST00000548666 354 ntBASIC6.67□□□□□ -1.34
COL6A1P12109 AC093014.1-201ENST00000548926 724 ntBASIC6.67□□□□□ -1.34
COL6A1P12109 AC011603.3-201ENST00000549516 279 ntTSL 3 BASIC6.67□□□□□ -1.34
COL6A1P12109 AC009063.2-203ENST00000567860 745 ntTSL 2 BASIC6.67□□□□□ -1.34
COL6A1P12109 AC005242.1-201ENST00000585658 438 ntBASIC6.67□□□□□ -1.34
COL6A1P12109 SNX6P1-201ENST00000601728 1224 ntBASIC6.67□□□□□ -1.34
COL6A1P12109 AC084373.1-201ENST00000603311 235 ntBASIC6.67□□□□□ -1.34
COL6A1P12109 OR8H2-202ENST00000618136 1038 ntAPPRIS ALT1 BASIC6.67□□□□□ -1.34
COL6A1P12109 BANCR-201ENST00000624238 473 ntTSL 2 BASIC6.67□□□□□ -1.34
COL6A1P12109 AC006927.2-201ENST00000639256 389 ntBASIC6.67□□□□□ -1.34
COL6A1P12109 CASC19-264ENST00000641912 1184 ntBASIC6.67□□□□□ -1.34
COL6A1P12109 PSG1-206ENST00000595356 1903 ntAPPRIS ALT2 TSL 1 (best) BASIC6.67□□□□□ -1.34
COL6A1P12109 LRRC37A3-203ENST00000339474 2589 ntTSL 2 BASIC6.67□□□□□ -1.34
COL6A1P12109 ZNF729-201ENST00000601693 3877 ntAPPRIS P1 TSL 2 BASIC6.67□□□□□ -1.34
COL6A1P12109 RABGAP1L-218ENST00000489615 6821 ntTSL 1 (best) BASIC6.67□□□□□ -1.34
COL6A1P12109 PUM1-207ENST00000440538 3936 ntTSL 1 (best) BASIC6.67□□□□□ -1.34
COL6A1P12109 SERPINB7-207ENST00000546027 1951 ntAPPRIS P1 TSL 2 BASIC6.67□□□□□ -1.34
COL6A1P12109 PLD1-202ENST00000351298 5604 ntTSL 1 (best) BASIC6.67□□□□□ -1.34
COL6A1P12109 ZNF311-203ENST00000377179 2730 ntAPPRIS P1 TSL 5 BASIC6.67□□□□□ -1.34
COL6A1P12109 TOX3-202ENST00000407228 3124 ntAPPRIS ALT2 TSL 2 BASIC6.67□□□□□ -1.34
COL6A1P12109 AC110597.1-201ENST00000562669 3176 ntBASIC6.67□□□□□ -1.34
Retrieved 100 of 98,524 protein–RNA pairs in 78.6 ms