Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 AC095055.1-201ENST00000603472 1113 ntBASIC5.31□□□□□ -1.56
LHX3Q9UBR4 SDR42E1P1-201ENST00000611327 477 ntBASIC5.31□□□□□ -1.56
LHX3Q9UBR4 MIR6839-201ENST00000620425 113 ntBASIC5.31□□□□□ -1.56
LHX3Q9UBR4 AC243960.7-201ENST00000623532 707 ntBASIC5.31□□□□□ -1.56
LHX3Q9UBR4 PIGK-203ENST00000445065 4318 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
LHX3Q9UBR4 GTDC1-220ENST00000618778 2317 ntTSL 5 BASIC5.31□□□□□ -1.56
LHX3Q9UBR4 AC023421.1-201ENST00000590535 1785 ntBASIC5.31□□□□□ -1.56
LHX3Q9UBR4 DCLRE1A-201ENST00000361384 4468 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
LHX3Q9UBR4 VPS50-202ENST00000305866 3613 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
LHX3Q9UBR4 PLS3-201ENST00000289290 2277 ntTSL 2 BASIC5.31□□□□□ -1.56
LHX3Q9UBR4 TMLHE-AS1-201ENST00000433624 1702 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
LHX3Q9UBR4 ZNF569-203ENST00000392150 1918 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
LHX3Q9UBR4 PRR14L-201ENST00000327423 10826 ntAPPRIS P2 TSL 5 BASIC5.3□□□□□ -1.56
LHX3Q9UBR4 SLC38A1-211ENST00000612161 1607 ntTSL 5 BASIC5.3□□□□□ -1.56
LHX3Q9UBR4 ZNF418-205ENST00000595830 3543 ntAPPRIS P3 TSL 1 (best) BASIC5.3□□□□□ -1.56
LHX3Q9UBR4 INO80D-201ENST00000403263 14136 ntAPPRIS P1 TSL 5 BASIC5.3□□□□□ -1.56
LHX3Q9UBR4 SLC38A9-218ENST00000512595 1756 ntTSL 2 BASIC5.3□□□□□ -1.56
LHX3Q9UBR4 CASP1-208ENST00000527979 1521 ntTSL 5 BASIC5.3□□□□□ -1.56
LHX3Q9UBR4 PANDAR-201ENST00000629595 1506 ntBASIC5.3□□□□□ -1.56
LHX3Q9UBR4 NDRG3-202ENST00000359675 2917 ntAPPRIS ALT1 TSL 1 (best) BASIC5.3□□□□□ -1.56
LHX3Q9UBR4 ENKUR-201ENST00000331161 3382 ntAPPRIS P2 TSL 1 (best) BASIC5.3□□□□□ -1.56
LHX3Q9UBR4 PDE4D-216ENST00000507116 3350 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
LHX3Q9UBR4 DDX18P6-201ENST00000450119 1997 ntBASIC5.3□□□□□ -1.56
LHX3Q9UBR4 RPL23P2-201ENST00000320371 421 ntBASIC5.3□□□□□ -1.56
LHX3Q9UBR4 Y_RNA.62-201ENST00000362840 99 ntBASIC5.3□□□□□ -1.56
LHX3Q9UBR4 SNORA17.1-201ENST00000362945 126 ntBASIC5.3□□□□□ -1.56
LHX3Q9UBR4 U8.4-201ENST00000363626 134 ntBASIC5.3□□□□□ -1.56
LHX3Q9UBR4 RN7SKP153-201ENST00000365026 316 ntBASIC5.3□□□□□ -1.56
LHX3Q9UBR4 RNA5SP241-201ENST00000391326 114 ntBASIC5.3□□□□□ -1.56
LHX3Q9UBR4 F9-202ENST00000394090 1272 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
LHX3Q9UBR4 NUDT19P3-201ENST00000404698 555 ntBASIC5.3□□□□□ -1.56
LHX3Q9UBR4 BMS1P13-201ENST00000417301 885 ntBASIC5.3□□□□□ -1.56
LHX3Q9UBR4 SETP9-201ENST00000423837 832 ntBASIC5.3□□□□□ -1.56
LHX3Q9UBR4 LINC01506-201ENST00000432148 495 ntTSL 2 BASIC5.3□□□□□ -1.56
LHX3Q9UBR4 AC090018.1-201ENST00000434369 367 ntBASIC5.3□□□□□ -1.56
LHX3Q9UBR4 LINC01828-201ENST00000445514 531 ntTSL 4 BASIC5.3□□□□□ -1.56
LHX3Q9UBR4 DNAJB5P1-201ENST00000454004 806 ntBASIC5.3□□□□□ -1.56
LHX3Q9UBR4 AC022133.1-201ENST00000490961 571 ntBASIC5.3□□□□□ -1.56
LHX3Q9UBR4 AC093763.2-201ENST00000505334 1223 ntBASIC5.3□□□□□ -1.56
LHX3Q9UBR4 AC117383.1-201ENST00000507698 422 ntTSL 3 BASIC5.3□□□□□ -1.56
LHX3Q9UBR4 GTF2F2P1-201ENST00000511083 675 ntBASIC5.3□□□□□ -1.56
LHX3Q9UBR4 AC012400.1-201ENST00000518452 381 ntBASIC5.3□□□□□ -1.56
LHX3Q9UBR4 AC097173.2-201ENST00000518701 474 ntTSL 3 BASIC5.3□□□□□ -1.56
LHX3Q9UBR4 IGLV2-28-201ENST00000520681 304 ntBASIC5.3□□□□□ -1.56
LHX3Q9UBR4 LINC01493-201ENST00000530102 460 ntTSL 5 BASIC5.3□□□□□ -1.56
LHX3Q9UBR4 KCTD21-AS1-206ENST00000532831 856 ntTSL 2 BASIC5.3□□□□□ -1.56
LHX3Q9UBR4 AC007527.1-202ENST00000543347 382 ntTSL 3 BASIC5.3□□□□□ -1.56
LHX3Q9UBR4 LINC01580-201ENST00000555255 561 ntTSL 4 BASIC5.3□□□□□ -1.56
LHX3Q9UBR4 AC011270.1-201ENST00000558606 583 ntBASIC5.3□□□□□ -1.56
LHX3Q9UBR4 NQO1-206ENST00000564043 892 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
LHX3Q9UBR4 RN7SL290P-201ENST00000578661 300 ntBASIC5.3□□□□□ -1.56
LHX3Q9UBR4 RN7SL708P-201ENST00000580952 299 ntBASIC5.3□□□□□ -1.56
LHX3Q9UBR4 AC015845.2-201ENST00000581805 472 ntTSL 2 BASIC5.3□□□□□ -1.56
LHX3Q9UBR4 AC022154.1-203ENST00000594850 493 ntTSL 3 BASIC5.3□□□□□ -1.56
LHX3Q9UBR4 AP005131.7-201ENST00000610087 611 ntBASIC5.3□□□□□ -1.56
LHX3Q9UBR4 AC093495.1-217ENST00000627385 428 ntTSL 5 BASIC5.3□□□□□ -1.56
LHX3Q9UBR4 SRRM1-202ENST00000374389 3110 ntAPPRIS ALT2 TSL 5 BASIC5.3□□□□□ -1.56
LHX3Q9UBR4 LMNTD1-201ENST00000282881 1718 ntAPPRIS P3 TSL 2 BASIC5.3□□□□□ -1.56
LHX3Q9UBR4 DYNC1I2-207ENST00000410079 2159 ntTSL 2 BASIC5.3□□□□□ -1.56
LHX3Q9UBR4 RCOR3-201ENST00000367005 4246 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
LHX3Q9UBR4 SEMA6D-210ENST00000558816 4419 ntTSL 5 BASIC5.3□□□□□ -1.56
LHX3Q9UBR4 ZNF83-202ENST00000536937 2726 ntAPPRIS P1 TSL 2 BASIC5.3□□□□□ -1.56
LHX3Q9UBR4 ZNF573-208ENST00000536220 2257 ntAPPRIS P1 TSL 3 BASIC5.3□□□□□ -1.56
LHX3Q9UBR4 SLC4A7-206ENST00000428386 7385 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
LHX3Q9UBR4 CEP290-202ENST00000397838 2421 ntTSL 5 BASIC5.29□□□□□ -1.56
LHX3Q9UBR4 WDHD1-201ENST00000360586 5996 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
LHX3Q9UBR4 SLFN12-201ENST00000304905 2383 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
LHX3Q9UBR4 AC092451.3-201ENST00000625067 1343 ntBASIC5.29□□□□□ -1.56
LHX3Q9UBR4 OR52A5-202ENST00000642125 3993 ntAPPRIS P1 BASIC5.29□□□□□ -1.56
LHX3Q9UBR4 DSC2-202ENST00000280904 12325 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
LHX3Q9UBR4 AC021205.3-201ENST00000609680 1709 ntTSL 3 BASIC5.29□□□□□ -1.56
LHX3Q9UBR4 AHCTF1-201ENST00000326225 8633 ntAPPRIS P2 TSL 1 (best) BASIC5.29□□□□□ -1.56
LHX3Q9UBR4 PRUNE2-201ENST00000223609 2697 ntTSL 2 BASIC5.29□□□□□ -1.56
LHX3Q9UBR4 AC091045.1-201ENST00000561460 2277 ntTSL 5 BASIC5.29□□□□□ -1.56
LHX3Q9UBR4 TMEM99-201ENST00000301665 2058 ntAPPRIS P2 TSL 2 BASIC5.29□□□□□ -1.56
LHX3Q9UBR4 OR2J2-202ENST00000377167 1272 ntAPPRIS P1 BASIC5.29□□□□□ -1.56
LHX3Q9UBR4 DEFB136-201ENST00000382209 237 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
LHX3Q9UBR4 RNU1-106P-201ENST00000384382 164 ntBASIC5.29□□□□□ -1.56
LHX3Q9UBR4 IGLV4-3-201ENST00000390318 403 ntAPPRIS P1 BASIC5.29□□□□□ -1.56
LHX3Q9UBR4 AC003035.1-201ENST00000391359 544 ntTSL 3 BASIC5.29□□□□□ -1.56
LHX3Q9UBR4 RN7SKP126-201ENST00000411143 300 ntBASIC5.29□□□□□ -1.56
LHX3Q9UBR4 AC096644.3-201ENST00000416788 338 ntBASIC5.29□□□□□ -1.56
LHX3Q9UBR4 AL929472.2-201ENST00000419993 481 ntTSL 5 BASIC5.29□□□□□ -1.56
LHX3Q9UBR4 LINC01589-201ENST00000422971 548 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
LHX3Q9UBR4 HNRNPA1P29-201ENST00000426409 879 ntBASIC5.29□□□□□ -1.56
LHX3Q9UBR4 RPS27AP6-201ENST00000427962 448 ntBASIC5.29□□□□□ -1.56
LHX3Q9UBR4 HSPD1P12-201ENST00000429127 1069 ntBASIC5.29□□□□□ -1.56
LHX3Q9UBR4 AL158835.2-201ENST00000430970 300 ntTSL 2 BASIC5.29□□□□□ -1.56
LHX3Q9UBR4 TPTE2P1-204ENST00000435256 593 ntBASIC5.29□□□□□ -1.56
LHX3Q9UBR4 AF127577.2-201ENST00000436429 824 ntTSL 3 BASIC5.29□□□□□ -1.56
LHX3Q9UBR4 AL450472.1-201ENST00000439434 405 ntTSL 2 BASIC5.29□□□□□ -1.56
LHX3Q9UBR4 PARGP1-202ENST00000440803 790 ntTSL 2 BASIC5.29□□□□□ -1.56
LHX3Q9UBR4 AC091685.1-201ENST00000442436 448 ntTSL 3 BASIC5.29□□□□□ -1.56
LHX3Q9UBR4 LINC01789-201ENST00000443123 860 ntTSL 5 BASIC5.29□□□□□ -1.56
LHX3Q9UBR4 TSACC-207ENST00000470342 601 ntTSL 2 BASIC5.29□□□□□ -1.56
LHX3Q9UBR4 RPS18P6-201ENST00000476880 458 ntBASIC5.29□□□□□ -1.56
LHX3Q9UBR4 SNRPCP2-201ENST00000504370 475 ntBASIC5.29□□□□□ -1.56
LHX3Q9UBR4 AC008638.1-201ENST00000506035 866 ntBASIC5.29□□□□□ -1.56
LHX3Q9UBR4 AC019133.1-201ENST00000508292 420 ntTSL 3 BASIC5.29□□□□□ -1.56
LHX3Q9UBR4 AC093305.1-201ENST00000514105 522 ntTSL 5 BASIC5.29□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 75.8 ms