Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 AC063943.1-201ENST00000465434 453 ntBASIC6.84□□□□□ -1.31
HOXC9P31274 THAP6-212ENST00000508105 1103 ntTSL 1 (best) BASIC6.84□□□□□ -1.31
HOXC9P31274 SEPT10P1-201ENST00000517342 1162 ntBASIC6.84□□□□□ -1.31
HOXC9P31274 AC234771.5-201ENST00000600161 514 ntBASIC6.84□□□□□ -1.31
HOXC9P31274 AC005618.4-201ENST00000625053 554 ntBASIC6.84□□□□□ -1.31
HOXC9P31274 LINC00850-201ENST00000629221 685 ntTSL 1 (best) BASIC6.84□□□□□ -1.31
HOXC9P31274 ZCCHC8-201ENST00000536306 2904 ntTSL 1 (best) BASIC6.84□□□□□ -1.31
HOXC9P31274 RIC3-202ENST00000335425 5223 ntTSL 1 (best) BASIC6.84□□□□□ -1.31
HOXC9P31274 FOXP2-202ENST00000360232 1412 ntTSL 1 (best) BASIC6.84□□□□□ -1.32
HOXC9P31274 UGGT1-201ENST00000259253 10650 ntAPPRIS P1 TSL 1 (best) BASIC6.84□□□□□ -1.32
HOXC9P31274 KIAA0586-203ENST00000423743 5339 ntAPPRIS ALT2 TSL 1 (best) BASIC6.83□□□□□ -1.32
HOXC9P31274 WDHD1-201ENST00000360586 5996 ntAPPRIS P1 TSL 1 (best) BASIC6.83□□□□□ -1.32
HOXC9P31274 CTNND1-212ENST00000525902 4984 ntTSL 1 (best) BASIC6.83□□□□□ -1.32
HOXC9P31274 PATJ-203ENST00000371158 8505 ntAPPRIS P1 TSL 5 BASIC6.83□□□□□ -1.32
HOXC9P31274 EFCAB3-201ENST00000305286 1542 ntAPPRIS P1 TSL 1 (best) BASIC6.83□□□□□ -1.32
HOXC9P31274 AC006210.2-201ENST00000367074 1545 ntBASIC6.83□□□□□ -1.32
HOXC9P31274 RN7SKP153-201ENST00000365026 316 ntBASIC6.83□□□□□ -1.32
HOXC9P31274 RCAN3-201ENST00000374393 382 ntTSL 1 (best) BASIC6.83□□□□□ -1.32
HOXC9P31274 MANSC4-201ENST00000381273 1023 ntAPPRIS P1 TSL 5 BASIC6.83□□□□□ -1.32
HOXC9P31274 AL133482.1-201ENST00000415988 498 ntBASIC6.83□□□□□ -1.32
HOXC9P31274 AC019050.1-201ENST00000418508 492 ntBASIC6.83□□□□□ -1.32
HOXC9P31274 AC245028.1-201ENST00000423259 256 ntBASIC6.83□□□□□ -1.32
HOXC9P31274 AL451042.1-201ENST00000426353 544 ntTSL 3 BASIC6.83□□□□□ -1.32
HOXC9P31274 HSPD1P12-201ENST00000429127 1069 ntBASIC6.83□□□□□ -1.32
HOXC9P31274 LINC00894-203ENST00000432696 298 ntTSL 1 (best) BASIC6.83□□□□□ -1.32
HOXC9P31274 IGHV5-78-201ENST00000450948 295 ntBASIC6.83□□□□□ -1.32
HOXC9P31274 AL356289.2-201ENST00000455238 292 ntTSL 5 BASIC6.83□□□□□ -1.32
HOXC9P31274 RPS24P16-201ENST00000497294 392 ntBASIC6.83□□□□□ -1.32
HOXC9P31274 AC012629.1-201ENST00000503953 342 ntTSL 3 BASIC6.83□□□□□ -1.32
HOXC9P31274 AC087360.1-201ENST00000518788 616 ntBASIC6.83□□□□□ -1.32
HOXC9P31274 RGS5-219ENST00000528019 512 ntTSL 4 BASIC6.83□□□□□ -1.32
HOXC9P31274 AC130364.2-201ENST00000528639 604 ntBASIC6.83□□□□□ -1.32
HOXC9P31274 DNAL1-205ENST00000554339 548 ntTSL 5 BASIC6.83□□□□□ -1.32
HOXC9P31274 AC112693.1-201ENST00000555297 682 ntTSL 3 BASIC6.83□□□□□ -1.32
HOXC9P31274 AL132712.2-201ENST00000556653 127 ntTSL 3 BASIC6.83□□□□□ -1.32
HOXC9P31274 C15orf41-205ENST00000563167 772 ntTSL 3 BASIC6.83□□□□□ -1.32
HOXC9P31274 UBE2FP2-201ENST00000566646 462 ntBASIC6.83□□□□□ -1.32
HOXC9P31274 AC015727.1-201ENST00000572792 512 ntTSL 5 BASIC6.83□□□□□ -1.32
HOXC9P31274 AC008745.1-201ENST00000604064 271 ntBASIC6.83□□□□□ -1.32
HOXC9P31274 AC073218.2-202ENST00000605962 617 ntTSL 5 BASIC6.83□□□□□ -1.32
HOXC9P31274 AC105402.3-203ENST00000608822 885 ntTSL 5 BASIC6.83□□□□□ -1.32
HOXC9P31274 AL161616.1-201ENST00000611867 286 ntBASIC6.83□□□□□ -1.32
HOXC9P31274 LINC01002-236ENST00000634022 378 ntTSL 5 BASIC6.83□□□□□ -1.32
HOXC9P31274 SOX2-OT-218ENST00000498731 3576 ntTSL 1 (best) BASIC6.83□□□□□ -1.32
HOXC9P31274 CPNE4-214ENST00000617767 3556 ntTSL 2 BASIC6.83□□□□□ -1.32
HOXC9P31274 ZNF521-201ENST00000361524 4871 ntAPPRIS P1 TSL 1 (best) BASIC6.83□□□□□ -1.32
HOXC9P31274 AKAP6-212ENST00000557272 4601 ntTSL 5 BASIC6.83□□□□□ -1.32
HOXC9P31274 AL513550.1-201ENST00000418945 1638 ntTSL 2 BASIC6.83□□□□□ -1.32
HOXC9P31274 ZC3H14-201ENST00000251038 18281 ntAPPRIS P3 TSL 1 (best) BASIC6.83□□□□□ -1.32
HOXC9P31274 SAMSN1-206ENST00000619120 2028 ntTSL 1 (best) BASIC6.83□□□□□ -1.32
HOXC9P31274 AHCTF1-201ENST00000326225 8633 ntAPPRIS P2 TSL 1 (best) BASIC6.83□□□□□ -1.32
HOXC9P31274 BNIP3L-202ENST00000518611 1352 ntTSL 2 BASIC6.82□□□□□ -1.32
HOXC9P31274 ZSCAN4-202ENST00000612521 1979 ntAPPRIS P1 TSL 5 BASIC6.82□□□□□ -1.32
HOXC9P31274 NHS-205ENST00000617601 8163 ntTSL 1 (best) BASIC6.82□□□□□ -1.32
HOXC9P31274 LINC01362-202ENST00000452901 1712 ntTSL 1 (best) BASIC6.82□□□□□ -1.32
HOXC9P31274 ETF1-203ENST00000503014 1736 ntTSL 2 BASIC6.82□□□□□ -1.32
HOXC9P31274 MAP3K2-201ENST00000344908 2135 ntAPPRIS P1 TSL 1 (best) BASIC6.82□□□□□ -1.32
HOXC9P31274 AC091045.1-201ENST00000561460 2277 ntTSL 5 BASIC6.82□□□□□ -1.32
HOXC9P31274 OR51I1-201ENST00000380211 945 ntAPPRIS P1 BASIC6.82□□□□□ -1.32
HOXC9P31274 AL590723.1-201ENST00000426030 629 ntTSL 5 BASIC6.82□□□□□ -1.32
HOXC9P31274 SLC36A1-202ENST00000429484 977 ntTSL 1 (best) BASIC6.82□□□□□ -1.32
HOXC9P31274 TEX41-206ENST00000432608 661 ntTSL 3 BASIC6.82□□□□□ -1.32
HOXC9P31274 AL133247.1-201ENST00000435713 646 ntTSL 3 BASIC6.82□□□□□ -1.32
HOXC9P31274 AL713851.1-201ENST00000438753 918 ntTSL 5 BASIC6.82□□□□□ -1.32
HOXC9P31274 AL138878.2-201ENST00000440581 1241 ntBASIC6.82□□□□□ -1.32
HOXC9P31274 OR7E125P-201ENST00000443450 846 ntBASIC6.82□□□□□ -1.32
HOXC9P31274 AL137845.2-201ENST00000444292 988 ntBASIC6.82□□□□□ -1.32
HOXC9P31274 RPL36AP15-201ENST00000444514 266 ntBASIC6.82□□□□□ -1.32
HOXC9P31274 OR52J1P-201ENST00000450596 932 ntBASIC6.82□□□□□ -1.32
HOXC9P31274 AC115989.1-202ENST00000452153 1150 ntTSL 2 BASIC6.82□□□□□ -1.32
HOXC9P31274 TAAR4P-201ENST00000454843 1039 ntBASIC6.82□□□□□ -1.32
HOXC9P31274 RN7SL346P-201ENST00000491561 294 ntBASIC6.82□□□□□ -1.32
HOXC9P31274 AC010350.1-201ENST00000504908 231 ntBASIC6.82□□□□□ -1.32
HOXC9P31274 FCF1-203ENST00000553615 954 ntTSL 3 BASIC6.82□□□□□ -1.32
HOXC9P31274 NMNAT1P1-201ENST00000554095 876 ntBASIC6.82□□□□□ -1.32
HOXC9P31274 CLMN-206ENST00000556441 452 ntTSL 5 BASIC6.82□□□□□ -1.32
HOXC9P31274 AC018552.1-201ENST00000562099 811 ntBASIC6.82□□□□□ -1.32
HOXC9P31274 TTN-AS1-222ENST00000587576 399 ntTSL 3 BASIC6.82□□□□□ -1.32
HOXC9P31274 AL356608.1-201ENST00000610034 820 ntBASIC6.82□□□□□ -1.32
HOXC9P31274 DNAJC10-209ENST00000613960 1010 ntTSL 5 BASIC6.82□□□□□ -1.32
HOXC9P31274 NAA60-237ENST00000615865 326 ntTSL 5 BASIC6.82□□□□□ -1.32
HOXC9P31274 CCL4L2-215ENST00000620055 537 ntTSL 1 (best) BASIC6.82□□□□□ -1.32
HOXC9P31274 CCL4L2-217ENST00000620250 667 ntAPPRIS P1 TSL 1 (best) BASIC6.82□□□□□ -1.32
HOXC9P31274 CCL4-203ENST00000621626 552 ntTSL 1 (best) BASIC6.82□□□□□ -1.32
HOXC9P31274 AP000346.3-201ENST00000622821 210 ntBASIC6.82□□□□□ -1.32
HOXC9P31274 C2orf83-206ENST00000642055 453 ntAPPRIS P3 BASIC6.82□□□□□ -1.32
HOXC9P31274 ANKRD17-203ENST00000509867 8105 ntAPPRIS ALT2 TSL 1 (best) BASIC6.82□□□□□ -1.32
HOXC9P31274 ASB14-201ENST00000389601 3175 ntAPPRIS ALT2 TSL 5 BASIC6.82□□□□□ -1.32
HOXC9P31274 PRKAA1-204ENST00000397128 5088 ntAPPRIS P1 TSL 1 (best) BASIC6.82□□□□□ -1.32
HOXC9P31274 BX284613.1-201ENST00000452221 1641 ntBASIC6.82□□□□□ -1.32
HOXC9P31274 AC007998.4-201ENST00000612496 2533 ntBASIC6.82□□□□□ -1.32
HOXC9P31274 DECR1-215ENST00000522161 1766 ntAPPRIS ALT2 TSL 2 BASIC6.82□□□□□ -1.32
HOXC9P31274 USP8-204ENST00000425032 3559 ntTSL 2 BASIC6.82□□□□□ -1.32
HOXC9P31274 FGF1-215ENST00000619447 3818 ntAPPRIS P1 TSL 4 BASIC6.81□□□□□ -1.32
HOXC9P31274 LCA5L-218ENST00000485895 2551 ntTSL 1 (best) BASIC6.81□□□□□ -1.32
HOXC9P31274 AL360270.2-201ENST00000562952 5985 ntBASIC6.81□□□□□ -1.32
HOXC9P31274 ERCC6L-201ENST00000334463 4243 ntAPPRIS P2 TSL 1 (best) BASIC6.81□□□□□ -1.32
HOXC9P31274 MPDZ-212ENST00000538841 3186 ntTSL 2 BASIC6.81□□□□□ -1.32
HOXC9P31274 OR10A5-201ENST00000299454 1054 ntAPPRIS P1 BASIC6.81□□□□□ -1.32
HOXC9P31274 SPATA13-AS1-201ENST00000430733 433 ntTSL 3 BASIC6.81□□□□□ -1.32
Retrieved 100 of 98,524 protein–RNA pairs in 73.4 ms