Protein–RNA interactions for Protein: Q9EQM3

Nkx2-4, Homeobox protein Nkx-2.4, mousemouse

Predictions only

Length 354 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx2-4Q9EQM3 Ogfod3-201ENSMUST00000026169 1308 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Nkx2-4Q9EQM3 Cebpa-201ENSMUST00000042985 2626 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
Nkx2-4Q9EQM3 Gpn3-201ENSMUST00000031420 1592 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Nkx2-4Q9EQM3 Enoph1-201ENSMUST00000031268 1420 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Nkx2-4Q9EQM3 Tmem217-201ENSMUST00000114683 904 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Nkx2-4Q9EQM3 Ptpa-208ENSMUST00000131476 989 ntTSL 2 BASIC17.25■□□□□ 0.35
Nkx2-4Q9EQM3 Med11-202ENSMUST00000151013 445 ntTSL 2 BASIC17.25■□□□□ 0.35
Nkx2-4Q9EQM3 Gm25745-201ENSMUST00000174945 133 ntBASIC17.25■□□□□ 0.35
Nkx2-4Q9EQM3 Auts2-212ENSMUST00000178555 309 ntBASIC17.25■□□□□ 0.35
Nkx2-4Q9EQM3 Snrpf-201ENSMUST00000020203 861 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Nkx2-4Q9EQM3 Pfn3-201ENSMUST00000054146 545 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
Nkx2-4Q9EQM3 Gm11549-201ENSMUST00000124606 2829 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Nkx2-4Q9EQM3 Aadat-201ENSMUST00000079472 1972 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Nkx2-4Q9EQM3 Tada2b-201ENSMUST00000031097 3791 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
Nkx2-4Q9EQM3 Spry1-202ENSMUST00000108107 2773 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Nkx2-4Q9EQM3 Zmym3-204ENSMUST00000118092 1502 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Nkx2-4Q9EQM3 Lrriq4-203ENSMUST00000172350 1797 ntAPPRIS P3 TSL 5 BASIC17.25■□□□□ 0.35
Nkx2-4Q9EQM3 Arl4c-203ENSMUST00000187810 2740 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Nkx2-4Q9EQM3 Gnb1-203ENSMUST00000165335 3143 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Nkx2-4Q9EQM3 Cdk8-201ENSMUST00000031640 2973 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
Nkx2-4Q9EQM3 Usf2-201ENSMUST00000058860 2419 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Nkx2-4Q9EQM3 Nr1h3-202ENSMUST00000111354 1738 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Nkx2-4Q9EQM3 Slc7a10-201ENSMUST00000001854 1953 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Nkx2-4Q9EQM3 Atrnl1-201ENSMUST00000077282 6581 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Nkx2-4Q9EQM3 Zdhhc16-201ENSMUST00000026154 1821 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Nkx2-4Q9EQM3 Haghl-201ENSMUST00000077938 1405 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Nkx2-4Q9EQM3 2200002J24Rik-201ENSMUST00000013227 333 ntAPPRIS P1 TSL 3 BASIC17.24■□□□□ 0.35
Nkx2-4Q9EQM3 Rbmx-206ENSMUST00000143310 1296 ntTSL 5 BASIC17.24■□□□□ 0.35
Nkx2-4Q9EQM3 Egfl8-201ENSMUST00000015611 1150 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Nkx2-4Q9EQM3 Gm17114-201ENSMUST00000164716 511 ntTSL 3 BASIC17.24■□□□□ 0.35
Nkx2-4Q9EQM3 Gm43935-201ENSMUST00000203569 1050 ntBASIC17.24■□□□□ 0.35
Nkx2-4Q9EQM3 Timm13-203ENSMUST00000218481 471 ntTSL 3 BASIC17.24■□□□□ 0.35
Nkx2-4Q9EQM3 Chmp2a-201ENSMUST00000005711 949 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Nkx2-4Q9EQM3 Egfl8-202ENSMUST00000097345 1064 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Nkx2-4Q9EQM3 Ube2j2-203ENSMUST00000105581 1391 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Nkx2-4Q9EQM3 Gm8909-201ENSMUST00000040467 1357 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Nkx2-4Q9EQM3 Fbxl5-201ENSMUST00000047857 2858 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Nkx2-4Q9EQM3 Npm1-201ENSMUST00000075641 1633 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Nkx2-4Q9EQM3 Hmbs-201ENSMUST00000077353 1605 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Nkx2-4Q9EQM3 AC122335.2-201ENSMUST00000213901 6181 ntBASIC17.24■□□□□ 0.35
Nkx2-4Q9EQM3 Dnase2a-202ENSMUST00000109744 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Nkx2-4Q9EQM3 Cdca4-202ENSMUST00000220899 1994 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Nkx2-4Q9EQM3 Tpbgl-201ENSMUST00000178124 3022 ntAPPRIS P1 BASIC17.23■□□□□ 0.35
Nkx2-4Q9EQM3 Thap3-202ENSMUST00000105665 832 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
Nkx2-4Q9EQM3 Tm4sf19-201ENSMUST00000115149 1257 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Nkx2-4Q9EQM3 Gm14140-201ENSMUST00000119999 995 ntBASIC17.23■□□□□ 0.35
Nkx2-4Q9EQM3 Nat8b-ps-201ENSMUST00000162660 699 ntBASIC17.23■□□□□ 0.35
Nkx2-4Q9EQM3 Gm4535-201ENSMUST00000182274 558 ntBASIC17.23■□□□□ 0.35
Nkx2-4Q9EQM3 Gm6089-201ENSMUST00000197666 938 ntBASIC17.23■□□□□ 0.35
Nkx2-4Q9EQM3 Gm44430-201ENSMUST00000203376 995 ntBASIC17.23■□□□□ 0.35
Nkx2-4Q9EQM3 Ten1-201ENSMUST00000021130 902 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Nkx2-4Q9EQM3 Rangrf-201ENSMUST00000038644 820 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Nkx2-4Q9EQM3 Aurkaip1-201ENSMUST00000084097 1159 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Nkx2-4Q9EQM3 Abcc5-203ENSMUST00000096199 1136 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Nkx2-4Q9EQM3 Gm10355-201ENSMUST00000097146 517 ntBASIC17.23■□□□□ 0.35
Nkx2-4Q9EQM3 Olfr615-201ENSMUST00000098198 942 ntAPPRIS P1 BASIC17.23■□□□□ 0.35
Nkx2-4Q9EQM3 Hdhd2-202ENSMUST00000097521 1716 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Nkx2-4Q9EQM3 Pknox2-201ENSMUST00000039674 3632 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Nkx2-4Q9EQM3 Dact2-201ENSMUST00000053218 2808 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Nkx2-4Q9EQM3 Zswim8-208ENSMUST00000224751 5951 ntAPPRIS ALT2 BASIC17.23■□□□□ 0.35
Nkx2-4Q9EQM3 Rsph6a-202ENSMUST00000076887 1580 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Nkx2-4Q9EQM3 Siglecf-206ENSMUST00000206299 2149 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
Nkx2-4Q9EQM3 Insig2-201ENSMUST00000003818 2697 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Nkx2-4Q9EQM3 Sdc3-201ENSMUST00000070478 4973 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Nkx2-4Q9EQM3 Slc17a7-202ENSMUST00000209634 1860 ntTSL 5 BASIC17.22■□□□□ 0.35
Nkx2-4Q9EQM3 Acp7-201ENSMUST00000040112 1978 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Nkx2-4Q9EQM3 Trim67-201ENSMUST00000041106 5694 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Nkx2-4Q9EQM3 Htr5b-201ENSMUST00000055884 1935 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Nkx2-4Q9EQM3 Washc3-203ENSMUST00000182183 838 ntAPPRIS ALT2 TSL 2 BASIC17.22■□□□□ 0.35
Nkx2-4Q9EQM3 Tmem270-202ENSMUST00000201316 847 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Nkx2-4Q9EQM3 Gm7506-201ENSMUST00000207758 815 ntBASIC17.22■□□□□ 0.35
Nkx2-4Q9EQM3 AC090659.1-201ENSMUST00000224334 768 ntBASIC17.22■□□□□ 0.35
Nkx2-4Q9EQM3 Tmem270-201ENSMUST00000047305 932 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Nkx2-4Q9EQM3 1500035N22Rik-201ENSMUST00000075081 865 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Nkx2-4Q9EQM3 Xylt1-201ENSMUST00000032892 9020 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Nkx2-4Q9EQM3 Tm4sf4-201ENSMUST00000029377 1496 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Nkx2-4Q9EQM3 Cacnb3-201ENSMUST00000003442 2819 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Nkx2-4Q9EQM3 Tuba3b-201ENSMUST00000087445 1775 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Nkx2-4Q9EQM3 Gm45141-201ENSMUST00000206502 1888 ntBASIC17.22■□□□□ 0.35
Nkx2-4Q9EQM3 Rd3-201ENSMUST00000175680 1969 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Nkx2-4Q9EQM3 Bmt2-201ENSMUST00000045235 4143 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
Nkx2-4Q9EQM3 Rhbdl1-202ENSMUST00000183929 1349 ntTSL 5 BASIC17.21■□□□□ 0.35
Nkx2-4Q9EQM3 Agpat3-201ENSMUST00000001240 5980 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Nkx2-4Q9EQM3 Gm35558-201ENSMUST00000222675 2219 ntBASIC17.21■□□□□ 0.35
Nkx2-4Q9EQM3 Dnaaf5-203ENSMUST00000196441 2426 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Nkx2-4Q9EQM3 Nptxr-201ENSMUST00000023057 5004 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
Nkx2-4Q9EQM3 Otud7a-201ENSMUST00000058476 3483 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Nkx2-4Q9EQM3 Nudt6-208ENSMUST00000146324 1264 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Nkx2-4Q9EQM3 1700023H06Rik-201ENSMUST00000161006 1044 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Nkx2-4Q9EQM3 Rps13-ps1-201ENSMUST00000183478 538 ntBASIC17.21■□□□□ 0.35
Nkx2-4Q9EQM3 Urah-207ENSMUST00000211372 688 ntAPPRIS P3 TSL 2 BASIC17.21■□□□□ 0.35
Nkx2-4Q9EQM3 AC171004.1-201ENSMUST00000221723 664 ntTSL 3 BASIC17.21■□□□□ 0.35
Nkx2-4Q9EQM3 Urah-201ENSMUST00000026554 890 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
Nkx2-4Q9EQM3 2010003K11Rik-201ENSMUST00000048482 1165 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Nkx2-4Q9EQM3 Ankrd39-201ENSMUST00000001172 2109 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Nkx2-4Q9EQM3 Mtif3-201ENSMUST00000016654 2131 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Nkx2-4Q9EQM3 Itsn1-206ENSMUST00000113999 5393 ntTSL 5 BASIC17.21■□□□□ 0.35
Nkx2-4Q9EQM3 Asap2-202ENSMUST00000064595 5678 ntAPPRIS P4 TSL 5 BASIC17.21■□□□□ 0.34
Nkx2-4Q9EQM3 Sh3yl1-201ENSMUST00000020997 1750 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
Nkx2-4Q9EQM3 Olig2-201ENSMUST00000035608 2437 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Retrieved 100 of 76,532 protein–RNA pairs in 39.8 ms