Protein–RNA interactions for Protein: Q9EPU4

Cpsf1, Cleavage and polyadenylation specificity factor subunit 1, mousemouse

Known RBP Predictions only

Length 1,441 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cpsf1Q9EPU4 Gm9857-201ENSMUST00000050914 393 ntAPPRIS P1 BASIC23.18■■□□□ 1.3
Cpsf1Q9EPU4 Birc2-201ENSMUST00000054878 378 ntBASIC23.18■■□□□ 1.3
Cpsf1Q9EPU4 Gm26548-201ENSMUST00000181165 2029 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
Cpsf1Q9EPU4 Slc26a10-205ENSMUST00000222911 3067 ntAPPRIS ALT2 TSL 5 BASIC23.18■■□□□ 1.3
Cpsf1Q9EPU4 Tgfb1i1-205ENSMUST00000165667 1812 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
Cpsf1Q9EPU4 Sh3bp1-201ENSMUST00000001226 2510 ntTSL 5 BASIC23.18■■□□□ 1.3
Cpsf1Q9EPU4 Adck1-204ENSMUST00000222695 2253 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
Cpsf1Q9EPU4 Mettl21a-202ENSMUST00000114079 2030 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
Cpsf1Q9EPU4 Babam1-201ENSMUST00000002473 1433 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
Cpsf1Q9EPU4 Prss53-201ENSMUST00000121394 2134 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
Cpsf1Q9EPU4 Large2-215ENSMUST00000176810 2477 ntAPPRIS ALT2 TSL 5 BASIC23.18■■□□□ 1.3
Cpsf1Q9EPU4 Rnf181-203ENSMUST00000114095 869 ntTSL 3 BASIC23.17■■□□□ 1.3
Cpsf1Q9EPU4 Tulp3-205ENSMUST00000157005 1053 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
Cpsf1Q9EPU4 Ankrd23-204ENSMUST00000194853 1073 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
Cpsf1Q9EPU4 Rnf13-209ENSMUST00000199041 1062 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
Cpsf1Q9EPU4 AC153889.1-201ENSMUST00000219257 330 ntBASIC23.17■■□□□ 1.3
Cpsf1Q9EPU4 AC124569.2-201ENSMUST00000225998 818 ntBASIC23.17■■□□□ 1.3
Cpsf1Q9EPU4 Pnmt-201ENSMUST00000041301 1154 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
Cpsf1Q9EPU4 Mif4gd-201ENSMUST00000021087 1372 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
Cpsf1Q9EPU4 Il4i1-202ENSMUST00000118125 2275 ntAPPRIS ALT2 TSL 2 BASIC23.17■■□□□ 1.3
Cpsf1Q9EPU4 Gm15690-201ENSMUST00000128728 432 ntTSL 3 BASIC23.16■■□□□ 1.3
Cpsf1Q9EPU4 Gm15234-201ENSMUST00000141485 1058 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
Cpsf1Q9EPU4 5430416N02Rik-202ENSMUST00000181873 626 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
Cpsf1Q9EPU4 2010010A06Rik-202ENSMUST00000186356 694 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
Cpsf1Q9EPU4 Hnrnph1-201ENSMUST00000069304 2225 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
Cpsf1Q9EPU4 Ybx2-202ENSMUST00000108601 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC23.16■■□□□ 1.3
Cpsf1Q9EPU4 Htr3a-201ENSMUST00000003826 2082 ntAPPRIS P2 TSL 1 (best) BASIC23.16■■□□□ 1.3
Cpsf1Q9EPU4 Zbtb45-201ENSMUST00000051390 2171 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
Cpsf1Q9EPU4 Dtx2-201ENSMUST00000005072 2562 ntAPPRIS P3 TSL 1 (best) BASIC23.16■■□□□ 1.3
Cpsf1Q9EPU4 Snx21-201ENSMUST00000056181 2590 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
Cpsf1Q9EPU4 Slc30a4-202ENSMUST00000099457 3170 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
Cpsf1Q9EPU4 Ogfod3-201ENSMUST00000026169 1308 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
Cpsf1Q9EPU4 Scly-201ENSMUST00000027532 2202 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
Cpsf1Q9EPU4 Fam102b-202ENSMUST00000171143 5702 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
Cpsf1Q9EPU4 Rpl3l-202ENSMUST00000170239 1375 ntAPPRIS P1 TSL 5 BASIC23.16■■□□□ 1.3
Cpsf1Q9EPU4 Rpp40-202ENSMUST00000174230 1053 ntTSL 5 BASIC23.16■■□□□ 1.3
Cpsf1Q9EPU4 Bex3-204ENSMUST00000178632 933 ntAPPRIS P3 TSL 2 BASIC23.16■■□□□ 1.3
Cpsf1Q9EPU4 Gm43077-201ENSMUST00000200602 491 ntTSL 3 BASIC23.16■■□□□ 1.3
Cpsf1Q9EPU4 CT009713.7-201ENSMUST00000224689 571 ntBASIC23.16■■□□□ 1.3
Cpsf1Q9EPU4 Casp8-204ENSMUST00000191201 1849 ntAPPRIS ALT2 TSL 5 BASIC23.15■■□□□ 1.3
Cpsf1Q9EPU4 Rgp1-203ENSMUST00000117140 1635 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
Cpsf1Q9EPU4 Yipf4-201ENSMUST00000024873 2133 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
Cpsf1Q9EPU4 Zc3h14-203ENSMUST00000110104 3146 ntTSL 5 BASIC23.15■■□□□ 1.3
Cpsf1Q9EPU4 Tssc4-206ENSMUST00000177841 1364 ntAPPRIS P1 TSL 2 BASIC23.15■■□□□ 1.3
Cpsf1Q9EPU4 Adamtsl1-201ENSMUST00000048885 1842 ntTSL 5 BASIC23.15■■□□□ 1.3
Cpsf1Q9EPU4 Gm15372-201ENSMUST00000120729 834 ntBASIC23.15■■□□□ 1.3
Cpsf1Q9EPU4 Psma3-204ENSMUST00000160864 859 ntTSL 5 BASIC23.15■■□□□ 1.3
Cpsf1Q9EPU4 Tmem178b-203ENSMUST00000180886 712 ntTSL 5 BASIC23.15■■□□□ 1.3
Cpsf1Q9EPU4 Npcd-201ENSMUST00000023060 1162 ntAPPRIS ALT2 TSL 1 (best) BASIC23.15■■□□□ 1.3
Cpsf1Q9EPU4 Cldn19-201ENSMUST00000084309 924 ntAPPRIS P4 TSL 1 (best) BASIC23.15■■□□□ 1.3
Cpsf1Q9EPU4 Sri-205ENSMUST00000148633 2251 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
Cpsf1Q9EPU4 Fst-201ENSMUST00000022287 2556 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
Cpsf1Q9EPU4 Sec61a1-201ENSMUST00000032168 3172 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
Cpsf1Q9EPU4 Gm13312-201ENSMUST00000119631 718 ntBASIC23.14■■□□□ 1.29
Cpsf1Q9EPU4 Hint3-203ENSMUST00000161074 875 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
Cpsf1Q9EPU4 Hikeshi-207ENSMUST00000207309 835 ntTSL 5 BASIC23.14■■□□□ 1.29
Cpsf1Q9EPU4 Lce1a2-201ENSMUST00000029530 715 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
Cpsf1Q9EPU4 Fxyd6-201ENSMUST00000085939 1788 ntAPPRIS P2 TSL 1 (best) BASIC23.14■■□□□ 1.29
Cpsf1Q9EPU4 Iqsec1-210ENSMUST00000212100 3500 ntTSL 5 BASIC23.14■■□□□ 1.29
Cpsf1Q9EPU4 Hexb-201ENSMUST00000022169 1905 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
Cpsf1Q9EPU4 Coro1a-202ENSMUST00000106364 1747 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
Cpsf1Q9EPU4 Gm15635-204ENSMUST00000208024 2539 ntBASIC23.13■■□□□ 1.29
Cpsf1Q9EPU4 Chka-202ENSMUST00000072055 2549 ntAPPRIS P3 TSL 1 (best) BASIC23.13■■□□□ 1.29
Cpsf1Q9EPU4 Hmbs-201ENSMUST00000077353 1605 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
Cpsf1Q9EPU4 2810459M11Rik-202ENSMUST00000165824 3331 ntAPPRIS P3 TSL 1 (best) BASIC23.13■■□□□ 1.29
Cpsf1Q9EPU4 Fkrp-201ENSMUST00000061390 2827 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
Cpsf1Q9EPU4 E330011M16Rik-201ENSMUST00000193614 1794 ntBASIC23.13■■□□□ 1.29
Cpsf1Q9EPU4 Pafah1b3-207ENSMUST00000155118 679 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
Cpsf1Q9EPU4 Syngr2-206ENSMUST00000177131 935 ntAPPRIS ALT2 TSL 3 BASIC23.13■■□□□ 1.29
Cpsf1Q9EPU4 Drd2-201ENSMUST00000075764 2547 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
Cpsf1Q9EPU4 Zfp746-203ENSMUST00000203609 3648 ntAPPRIS ALT2 TSL 5 BASIC23.13■■□□□ 1.29
Cpsf1Q9EPU4 Grwd1-201ENSMUST00000107723 1898 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
Cpsf1Q9EPU4 Nat8f3-202ENSMUST00000168531 1347 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
Cpsf1Q9EPU4 Csnk1e-203ENSMUST00000122044 3174 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
Cpsf1Q9EPU4 Coq6-201ENSMUST00000021661 1602 ntAPPRIS P2 TSL 1 (best) BASIC23.12■■□□□ 1.29
Cpsf1Q9EPU4 Krt28-201ENSMUST00000006963 1624 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
Cpsf1Q9EPU4 Ext2-212ENSMUST00000184931 2629 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
Cpsf1Q9EPU4 Gck-202ENSMUST00000109822 1786 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
Cpsf1Q9EPU4 Klk12-202ENSMUST00000107970 1115 ntAPPRIS P1 TSL 5 BASIC23.12■■□□□ 1.29
Cpsf1Q9EPU4 Gm26871-202ENSMUST00000180774 695 ntTSL 2 BASIC23.12■■□□□ 1.29
Cpsf1Q9EPU4 Mrm2-201ENSMUST00000031536 1443 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
Cpsf1Q9EPU4 Cklf-201ENSMUST00000034342 667 ntAPPRIS P4 TSL 1 (best) BASIC23.12■■□□□ 1.29
Cpsf1Q9EPU4 Ccdc69-201ENSMUST00000055040 1402 ntAPPRIS P2 TSL 1 (best) BASIC23.12■■□□□ 1.29
Cpsf1Q9EPU4 Ccdc174-201ENSMUST00000037783 1752 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
Cpsf1Q9EPU4 Gpaa1-201ENSMUST00000023221 2107 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
Cpsf1Q9EPU4 Sirt1-202ENSMUST00000105442 3740 ntAPPRIS ALT2 TSL 1 (best) BASIC23.12■■□□□ 1.29
Cpsf1Q9EPU4 Gm11729-201ENSMUST00000124901 713 ntTSL 3 BASIC23.11■■□□□ 1.29
Cpsf1Q9EPU4 Sult2b1-201ENSMUST00000075571 1193 ntAPPRIS P2 TSL 1 (best) BASIC23.11■■□□□ 1.29
Cpsf1Q9EPU4 Sos2-206ENSMUST00000183277 4512 ntAPPRIS ALT2 TSL 5 BASIC23.11■■□□□ 1.29
Cpsf1Q9EPU4 Ubtf-204ENSMUST00000107117 3258 ntAPPRIS ALT2 TSL 5 BASIC23.11■■□□□ 1.29
Cpsf1Q9EPU4 Lgr4-201ENSMUST00000046548 5060 ntAPPRIS P1 TSL 2 BASIC23.11■■□□□ 1.29
Cpsf1Q9EPU4 Hcn2-202ENSMUST00000099513 3195 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
Cpsf1Q9EPU4 Misp-205ENSMUST00000219305 2569 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
Cpsf1Q9EPU4 Plekhm2-201ENSMUST00000030751 4154 ntAPPRIS ALT2 TSL 1 (best) BASIC23.1■■□□□ 1.29
Cpsf1Q9EPU4 Ckap4-202ENSMUST00000167671 2606 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
Cpsf1Q9EPU4 Gm12895-201ENSMUST00000122214 226 ntBASIC23.1■■□□□ 1.29
Cpsf1Q9EPU4 2410004I01Rik-201ENSMUST00000138424 1187 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
Cpsf1Q9EPU4 Idnk-201ENSMUST00000051490 764 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
Cpsf1Q9EPU4 Serf2-201ENSMUST00000099475 525 ntTSL 2 BASIC23.1■■□□□ 1.29
Cpsf1Q9EPU4 Gm13283-201ENSMUST00000191112 1463 ntAPPRIS P1 BASIC23.1■■□□□ 1.29
Retrieved 100 of 76,532 protein–RNA pairs in 41.1 ms