Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Dnajb2-208ENSMUST00000188346 1823 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Ushbp1Q8R370 0610012G03Rik-201ENSMUST00000202722 1445 ntAPPRIS P1 BASIC18.83■□□□□ 0.61
Ushbp1Q8R370 Mtmr3-202ENSMUST00000109943 5674 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Ushbp1Q8R370 A930029G22Rik-201ENSMUST00000181032 1710 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
Ushbp1Q8R370 Ggt6-202ENSMUST00000100903 1387 ntTSL 5 BASIC18.83■□□□□ 0.61
Ushbp1Q8R370 Bcor-206ENSMUST00000124033 6785 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.61
Ushbp1Q8R370 Nit1-202ENSMUST00000111295 1335 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.61
Ushbp1Q8R370 Enah-210ENSMUST00000193074 1971 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.61
Ushbp1Q8R370 Sar1a-201ENSMUST00000020285 2613 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Ushbp1Q8R370 Lonrf1-201ENSMUST00000065297 3930 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.61
Ushbp1Q8R370 Pex6-201ENSMUST00000002840 3200 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Ushbp1Q8R370 Hist1h2bf-201ENSMUST00000105106 461 ntAPPRIS P1 BASIC18.83■□□□□ 0.6
Ushbp1Q8R370 Psmd13-209ENSMUST00000164681 726 ntTSL 5 BASIC18.83■□□□□ 0.6
Ushbp1Q8R370 Gm18101-201ENSMUST00000215769 548 ntBASIC18.83■□□□□ 0.6
Ushbp1Q8R370 Nkx2-6-201ENSMUST00000062437 1134 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Ushbp1Q8R370 Rplp2-201ENSMUST00000084434 964 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Ushbp1Q8R370 Zbtb45-201ENSMUST00000051390 2171 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Ushbp1Q8R370 Gnao1-207ENSMUST00000138659 5526 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
Ushbp1Q8R370 Map3k5-201ENSMUST00000095806 5450 ntAPPRIS P2 TSL 1 (best) BASIC18.83■□□□□ 0.6
Ushbp1Q8R370 Apba1-201ENSMUST00000025830 6632 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Ushbp1Q8R370 Slc47a1-201ENSMUST00000010267 2639 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.6
Ushbp1Q8R370 Agbl4-205ENSMUST00000106591 1406 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
Ushbp1Q8R370 Rybp-201ENSMUST00000101118 4503 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Ushbp1Q8R370 Rbpms2-201ENSMUST00000055844 1987 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
Ushbp1Q8R370 Tnfrsf25-202ENSMUST00000035275 1603 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
Ushbp1Q8R370 Pdss2-201ENSMUST00000095725 2127 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Ushbp1Q8R370 Cklf-208ENSMUST00000212433 1304 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
Ushbp1Q8R370 Trim14-202ENSMUST00000102924 1582 ntTSL 2 BASIC18.82■□□□□ 0.6
Ushbp1Q8R370 Gpr161-202ENSMUST00000178700 1827 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
Ushbp1Q8R370 Ripor2-202ENSMUST00000058009 2550 ntAPPRIS ALT2 TSL 2 BASIC18.82■□□□□ 0.6
Ushbp1Q8R370 Zbtb24-201ENSMUST00000080771 2844 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Ushbp1Q8R370 Hist1h2bj-201ENSMUST00000110452 463 ntAPPRIS P1 BASIC18.82■□□□□ 0.6
Ushbp1Q8R370 Hist1h2bp-202ENSMUST00000110473 621 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Ushbp1Q8R370 Tppp3-202ENSMUST00000176419 719 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Ushbp1Q8R370 Hist1h2bm-201ENSMUST00000224651 524 ntAPPRIS P1 BASIC18.82■□□□□ 0.6
Ushbp1Q8R370 Tbpl1-201ENSMUST00000095794 1195 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Ushbp1Q8R370 March3-202ENSMUST00000102912 1754 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Ushbp1Q8R370 Gpr6-201ENSMUST00000061796 1786 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Ushbp1Q8R370 Dscr3-201ENSMUST00000023615 2547 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Ushbp1Q8R370 Prkar2a-201ENSMUST00000035220 4965 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Ushbp1Q8R370 Erlin1-201ENSMUST00000071698 3228 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
Ushbp1Q8R370 2310022A10Rik-201ENSMUST00000067386 2701 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
Ushbp1Q8R370 Acvr1c-204ENSMUST00000112608 1497 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
Ushbp1Q8R370 Disc1-208ENSMUST00000122389 1694 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
Ushbp1Q8R370 Bfsp2-201ENSMUST00000124310 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Ushbp1Q8R370 Prmt2-202ENSMUST00000099571 2052 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
Ushbp1Q8R370 Fam131b-203ENSMUST00000143278 4104 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
Ushbp1Q8R370 Gm9774-202ENSMUST00000192538 1392 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
Ushbp1Q8R370 4933428P19Rik-201ENSMUST00000199616 1376 ntBASIC18.81■□□□□ 0.6
Ushbp1Q8R370 Fam166b-201ENSMUST00000052829 1349 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Ushbp1Q8R370 Diaph1-205ENSMUST00000115634 5666 ntAPPRIS P3 TSL 5 BASIC18.81■□□□□ 0.6
Ushbp1Q8R370 Gm7609-201ENSMUST00000113402 1538 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Ushbp1Q8R370 Snx11-202ENSMUST00000107661 2197 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Ushbp1Q8R370 Lrrc47-205ENSMUST00000169622 3468 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
Ushbp1Q8R370 Mta3-203ENSMUST00000112350 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
Ushbp1Q8R370 Hoxd4-201ENSMUST00000047904 2560 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
Ushbp1Q8R370 Gm14464-201ENSMUST00000119658 1254 ntBASIC18.81■□□□□ 0.6
Ushbp1Q8R370 Gm15545-202ENSMUST00000141011 899 ntTSL 3 BASIC18.81■□□□□ 0.6
Ushbp1Q8R370 4930544I03Rik-201ENSMUST00000181184 1276 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Ushbp1Q8R370 Samd13-205ENSMUST00000197989 591 ntTSL 5 BASIC18.81■□□□□ 0.6
Ushbp1Q8R370 AC134329.2-201ENSMUST00000217897 428 ntBASIC18.81■□□□□ 0.6
Ushbp1Q8R370 AC124601.2-201ENSMUST00000222888 759 ntTSL 2 BASIC18.81■□□□□ 0.6
Ushbp1Q8R370 Il3ra-202ENSMUST00000223589 738 ntBASIC18.81■□□□□ 0.6
Ushbp1Q8R370 Hint2-201ENSMUST00000030192 610 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Ushbp1Q8R370 Lce1h-201ENSMUST00000051521 706 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Ushbp1Q8R370 Arrb1-210ENSMUST00000179755 7135 ntTSL 5 BASIC18.81■□□□□ 0.6
Ushbp1Q8R370 Arrb1-202ENSMUST00000098266 7132 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Ushbp1Q8R370 Ulk1-201ENSMUST00000031490 5213 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
Ushbp1Q8R370 Col13a1-204ENSMUST00000105453 2935 ntTSL 2 BASIC18.81■□□□□ 0.6
Ushbp1Q8R370 Hoxb2-201ENSMUST00000100523 1628 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Ushbp1Q8R370 Spout1-201ENSMUST00000100220 1805 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Ushbp1Q8R370 A530084C06Rik-201ENSMUST00000170573 3200 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
Ushbp1Q8R370 Ctsf-201ENSMUST00000119694 1975 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Ushbp1Q8R370 Hdhd2-202ENSMUST00000097521 1716 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Ushbp1Q8R370 Gm45774-201ENSMUST00000211992 2665 ntBASIC18.8■□□□□ 0.6
Ushbp1Q8R370 Qprt-201ENSMUST00000032912 2050 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Ushbp1Q8R370 Rbpj-203ENSMUST00000113865 5440 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Ushbp1Q8R370 Gm13216-201ENSMUST00000117145 591 ntBASIC18.8■□□□□ 0.6
Ushbp1Q8R370 Psma6-201ENSMUST00000021412 1042 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Ushbp1Q8R370 AC120002.2-201ENSMUST00000220205 773 ntBASIC18.8■□□□□ 0.6
Ushbp1Q8R370 Krt88-201ENSMUST00000023781 903 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Ushbp1Q8R370 Il17a-201ENSMUST00000027061 1171 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Ushbp1Q8R370 Rpl39l-201ENSMUST00000044103 805 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Ushbp1Q8R370 Ripply2-201ENSMUST00000058846 503 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Ushbp1Q8R370 Sbf1-205ENSMUST00000144585 6165 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
Ushbp1Q8R370 Ino80e-203ENSMUST00000106343 1973 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Ushbp1Q8R370 Mmp23-201ENSMUST00000030937 1434 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Ushbp1Q8R370 Cyb561d2-201ENSMUST00000041459 1786 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Ushbp1Q8R370 Sco1-201ENSMUST00000092996 2412 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
Ushbp1Q8R370 Fosl1-201ENSMUST00000025850 1707 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Ushbp1Q8R370 Fez2-202ENSMUST00000112487 2020 ntAPPRIS ALT1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Ushbp1Q8R370 Tmem132e-201ENSMUST00000054245 4386 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Ushbp1Q8R370 Ctdsp2-202ENSMUST00000105256 4817 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Ushbp1Q8R370 Dph1-201ENSMUST00000044949 2139 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Ushbp1Q8R370 Ptprf-201ENSMUST00000049074 7656 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
Ushbp1Q8R370 Tub-201ENSMUST00000033341 5997 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Ushbp1Q8R370 Hint1-201ENSMUST00000020504 636 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Ushbp1Q8R370 Cnih3-204ENSMUST00000209607 564 ntTSL 5 BASIC18.79■□□□□ 0.6
Ushbp1Q8R370 Stk11-210ENSMUST00000213772 1239 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Ushbp1Q8R370 Nthl1-201ENSMUST00000047611 1080 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Retrieved 100 of 76,532 protein–RNA pairs in 65.9 ms