Protein–RNA interactions for Protein: Q8CII8

Syne4, Nesprin-4, mousemouse

Predictions only

Length 388 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Syne4Q8CII8 Ydjc-201ENSMUST00000069064 1297 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Syne4Q8CII8 Mff-202ENSMUST00000078332 1894 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Syne4Q8CII8 Kansl1l-201ENSMUST00000068168 4459 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
Syne4Q8CII8 Gm26825-201ENSMUST00000181751 2026 ntTSL 5 BASIC19.01■□□□□ 0.63
Syne4Q8CII8 Fam221a-202ENSMUST00000121903 1304 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
Syne4Q8CII8 Cldn7-201ENSMUST00000018713 1335 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Syne4Q8CII8 Tbc1d9-202ENSMUST00000093393 5334 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Syne4Q8CII8 Rtkn-203ENSMUST00000121093 2597 ntAPPRIS P3 TSL 1 (best) BASIC19.01■□□□□ 0.63
Syne4Q8CII8 Vps53-203ENSMUST00000108419 2209 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
Syne4Q8CII8 Ero1lb-203ENSMUST00000221560 1964 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
Syne4Q8CII8 Gm26695-201ENSMUST00000180920 1251 ntTSL 5 BASIC19.01■□□□□ 0.63
Syne4Q8CII8 Gm29246-201ENSMUST00000189221 349 ntTSL 3 BASIC19.01■□□□□ 0.63
Syne4Q8CII8 Snrpf-201ENSMUST00000020203 861 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Syne4Q8CII8 Magohb-201ENSMUST00000032307 767 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Syne4Q8CII8 Mrpl17-201ENSMUST00000033170 1028 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
Syne4Q8CII8 Izumo1r-201ENSMUST00000034409 1291 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Syne4Q8CII8 Enah-203ENSMUST00000111025 3385 ntAPPRIS ALT2 TSL 5 BASIC19.01■□□□□ 0.63
Syne4Q8CII8 Rprd1b-207ENSMUST00000152452 1910 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
Syne4Q8CII8 Mxi1-201ENSMUST00000003870 5156 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
Syne4Q8CII8 Abcd4-210ENSMUST00000223107 2410 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
Syne4Q8CII8 Chd5-205ENSMUST00000164662 9375 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
Syne4Q8CII8 Hhipl1-201ENSMUST00000021685 5174 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Syne4Q8CII8 Upf1-201ENSMUST00000075666 4618 ntAPPRIS P2 TSL 1 (best) BASIC19.01■□□□□ 0.63
Syne4Q8CII8 Nipa2-202ENSMUST00000117812 3039 ntAPPRIS P1 TSL 2 BASIC19■□□□□ 0.63
Syne4Q8CII8 Ogfod3-201ENSMUST00000026169 1308 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Syne4Q8CII8 Gm32996-201ENSMUST00000199828 1447 ntBASIC19■□□□□ 0.63
Syne4Q8CII8 Ptgfrn-201ENSMUST00000102694 5902 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Syne4Q8CII8 Rgp1-203ENSMUST00000117140 1635 ntTSL 1 (best) BASIC19■□□□□ 0.63
Syne4Q8CII8 Hmbs-201ENSMUST00000077353 1605 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Syne4Q8CII8 Hdgfl3-201ENSMUST00000026094 2865 ntAPPRIS ALT1 TSL 1 (best) BASIC19■□□□□ 0.63
Syne4Q8CII8 Chrna2-202ENSMUST00000206455 1933 ntAPPRIS P1 TSL 5 BASIC19■□□□□ 0.63
Syne4Q8CII8 2610301B20Rik-201ENSMUST00000080517 2116 ntAPPRIS P2 TSL 1 (best) BASIC19■□□□□ 0.63
Syne4Q8CII8 Itsn1-206ENSMUST00000113999 5393 ntTSL 5 BASIC19■□□□□ 0.63
Syne4Q8CII8 Tpt1-201ENSMUST00000110894 1169 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Syne4Q8CII8 Gm11729-201ENSMUST00000124901 713 ntTSL 3 BASIC19■□□□□ 0.63
Syne4Q8CII8 Fosb-206ENSMUST00000208446 1090 ntTSL 1 (best) BASIC19■□□□□ 0.63
Syne4Q8CII8 Pdcd6-201ENSMUST00000022060 1131 ntAPPRIS P2 TSL 1 (best) BASIC19■□□□□ 0.63
Syne4Q8CII8 Lsmem1-201ENSMUST00000095760 1213 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Syne4Q8CII8 Tm7sf2-201ENSMUST00000025713 1471 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Syne4Q8CII8 Sars2-201ENSMUST00000094632 1868 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Syne4Q8CII8 Lrig1-202ENSMUST00000101126 4951 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Syne4Q8CII8 Znhit6-201ENSMUST00000098534 2339 ntAPPRIS P3 TSL 1 (best) BASIC19■□□□□ 0.63
Syne4Q8CII8 Paics-201ENSMUST00000031160 2482 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Syne4Q8CII8 Ube2k-201ENSMUST00000142407 4893 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Syne4Q8CII8 Ascl2-202ENSMUST00000121862 814 ntAPPRIS ALT2 BASIC18.99■□□□□ 0.63
Syne4Q8CII8 H2-Bl-201ENSMUST00000173080 1138 ntAPPRIS P5 TSL 1 (best) BASIC18.99■□□□□ 0.63
Syne4Q8CII8 H2-Bl-204ENSMUST00000184502 862 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
Syne4Q8CII8 Gm5264-201ENSMUST00000190584 848 ntBASIC18.99■□□□□ 0.63
Syne4Q8CII8 Il3ra-205ENSMUST00000224877 1128 ntAPPRIS ALT2 BASIC18.99■□□□□ 0.63
Syne4Q8CII8 Nek4-204ENSMUST00000226833 1252 ntAPPRIS ALT2 BASIC18.99■□□□□ 0.63
Syne4Q8CII8 Myl12b-201ENSMUST00000038446 1253 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Syne4Q8CII8 Pomgnt2-201ENSMUST00000084743 2365 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Syne4Q8CII8 Fcgrt-203ENSMUST00000210642 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
Syne4Q8CII8 Tnfrsf25-202ENSMUST00000035275 1603 ntAPPRIS P3 TSL 1 (best) BASIC18.99■□□□□ 0.63
Syne4Q8CII8 Neil3-201ENSMUST00000047768 2253 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Syne4Q8CII8 Creb3l1-201ENSMUST00000028663 2603 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Syne4Q8CII8 Erich2-203ENSMUST00000134607 1659 ntAPPRIS ALT2 TSL 5 BASIC18.98■□□□□ 0.63
Syne4Q8CII8 Senp2-201ENSMUST00000023561 4499 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Syne4Q8CII8 Myo16-204ENSMUST00000208309 2462 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
Syne4Q8CII8 4732440D04Rik-203ENSMUST00000191825 5428 ntBASIC18.98■□□□□ 0.63
Syne4Q8CII8 Ubb-201ENSMUST00000019649 1499 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Syne4Q8CII8 Smarcd2-201ENSMUST00000021052 2747 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Syne4Q8CII8 Sdcbp-201ENSMUST00000029912 2745 ntAPPRIS ALT1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Syne4Q8CII8 Cd37-204ENSMUST00000209779 2541 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
Syne4Q8CII8 Acbd4-201ENSMUST00000024492 2075 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
Syne4Q8CII8 Tmem44-204ENSMUST00000140402 2405 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Syne4Q8CII8 0610009B22Rik-202ENSMUST00000109098 892 ntAPPRIS P1 TSL 3 BASIC18.98■□□□□ 0.63
Syne4Q8CII8 Prss45-202ENSMUST00000146794 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
Syne4Q8CII8 4930515G01Rik-201ENSMUST00000173208 1247 ntBASIC18.98■□□□□ 0.63
Syne4Q8CII8 Mir5126-201ENSMUST00000175513 77 ntBASIC18.98■□□□□ 0.63
Syne4Q8CII8 Jpx-202ENSMUST00000182447 712 ntTSL 3 BASIC18.98■□□□□ 0.63
Syne4Q8CII8 AC159093.1-201ENSMUST00000227779 380 ntBASIC18.98■□□□□ 0.63
Syne4Q8CII8 Apopt1-201ENSMUST00000040519 1065 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.63
Syne4Q8CII8 2300002M23Rik-201ENSMUST00000044326 1290 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Syne4Q8CII8 Methig1-201ENSMUST00000075675 1029 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Syne4Q8CII8 Kcnn1-207ENSMUST00000212509 1608 ntAPPRIS ALT2 TSL 5 BASIC18.98■□□□□ 0.63
Syne4Q8CII8 Pfn2-201ENSMUST00000066882 2342 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Syne4Q8CII8 Fam57b-201ENSMUST00000079423 2328 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Syne4Q8CII8 Epn1-207ENSMUST00000208634 2127 ntAPPRIS ALT2 TSL 5 BASIC18.98■□□□□ 0.63
Syne4Q8CII8 Klhl2-201ENSMUST00000034017 3412 ntAPPRIS P2 TSL 1 (best) BASIC18.98■□□□□ 0.63
Syne4Q8CII8 Tmed4-201ENSMUST00000004508 2003 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Syne4Q8CII8 Sh3bp1-202ENSMUST00000061239 1917 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
Syne4Q8CII8 4930528D03Rik-201ENSMUST00000181528 1339 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
Syne4Q8CII8 Paip2-201ENSMUST00000041314 1475 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Syne4Q8CII8 Ccdc24-201ENSMUST00000106422 1365 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
Syne4Q8CII8 Ccdc126-201ENSMUST00000055559 2351 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Syne4Q8CII8 Snupn-201ENSMUST00000068856 1391 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Syne4Q8CII8 Bud23-201ENSMUST00000071677 1607 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
Syne4Q8CII8 Elac2-201ENSMUST00000071891 2771 ntAPPRIS P2 TSL 1 (best) BASIC18.97■□□□□ 0.63
Syne4Q8CII8 Lca5l-201ENSMUST00000054855 2508 ntAPPRIS P2 TSL 1 (best) BASIC18.97■□□□□ 0.63
Syne4Q8CII8 Gm11779-201ENSMUST00000118541 368 ntBASIC18.97■□□□□ 0.63
Syne4Q8CII8 Rbfox2-207ENSMUST00000227533 1041 ntBASIC18.97■□□□□ 0.63
Syne4Q8CII8 Rab11fip3-202ENSMUST00000120691 5103 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
Syne4Q8CII8 Gm14261-201ENSMUST00000145105 1429 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
Syne4Q8CII8 Gnb1-203ENSMUST00000165335 3143 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Syne4Q8CII8 Mfsd14a-201ENSMUST00000029570 2782 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Syne4Q8CII8 Rasgrp2-224ENSMUST00000167240 2192 ntAPPRIS P1 TSL 5 BASIC18.96■□□□□ 0.63
Syne4Q8CII8 Mfsd10-203ENSMUST00000114331 1754 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Syne4Q8CII8 Klf3-201ENSMUST00000165536 5221 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Syne4Q8CII8 Flot1-209ENSMUST00000174080 1383 ntTSL 5 BASIC18.96■□□□□ 0.63
Retrieved 100 of 76,532 protein–RNA pairs in 21.6 ms