Protein–RNA interactions for Protein: Q8C6K9

Col6a6, Collagen alpha-6(VI) chain, mousemouse

Predictions only

Length 2,265 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a6Q8C6K9 Cyp2w1-201ENSMUST00000031521 1512 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
Col6a6Q8C6K9 Lrrc58-201ENSMUST00000078717 8604 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Col6a6Q8C6K9 Eif5a-207ENSMUST00000108610 1409 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Col6a6Q8C6K9 Eif6-202ENSMUST00000109638 1382 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Col6a6Q8C6K9 1700025L06Rik-203ENSMUST00000211477 1623 ntTSL 5 BASIC15.12■□□□□ 0.01
Col6a6Q8C6K9 Npm1-201ENSMUST00000075641 1633 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Col6a6Q8C6K9 Sox30-201ENSMUST00000049038 2997 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Col6a6Q8C6K9 Mapk1ip1-203ENSMUST00000119664 1883 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Col6a6Q8C6K9 Kcng4-202ENSMUST00000164382 1875 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
Col6a6Q8C6K9 Icam5-201ENSMUST00000019616 2947 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Col6a6Q8C6K9 Il17re-205ENSMUST00000203661 2118 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
Col6a6Q8C6K9 Glra1-202ENSMUST00000102716 2390 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
Col6a6Q8C6K9 Gm6627-201ENSMUST00000218299 2386 ntBASIC15.12■□□□□ 0.01
Col6a6Q8C6K9 Gm3248-201ENSMUST00000163885 2055 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
Col6a6Q8C6K9 Maf-202ENSMUST00000109104 6360 ntAPPRIS P2 BASIC15.12■□□□□ 0.01
Col6a6Q8C6K9 Gm13036-201ENSMUST00000117799 748 ntBASIC15.12■□□□□ 0.01
Col6a6Q8C6K9 Tm4sf5-201ENSMUST00000019063 1000 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Col6a6Q8C6K9 6430573P05Rik-202ENSMUST00000192648 597 ntTSL 3 BASIC15.12■□□□□ 0.01
Col6a6Q8C6K9 Fcnb-201ENSMUST00000028179 1170 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Col6a6Q8C6K9 Fam69a-201ENSMUST00000031198 2721 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Col6a6Q8C6K9 Tmem51os1-202ENSMUST00000141769 2131 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Col6a6Q8C6K9 Mrm1-201ENSMUST00000018549 2477 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Col6a6Q8C6K9 Chn1-209ENSMUST00000166199 3876 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Col6a6Q8C6K9 E530001F21Rik-201ENSMUST00000120991 730 ntBASIC15.12■□□□□ 0.01
Col6a6Q8C6K9 Gm26695-201ENSMUST00000180920 1251 ntTSL 5 BASIC15.12■□□□□ 0.01
Col6a6Q8C6K9 Smim22-208ENSMUST00000185147 399 ntAPPRIS ALT2 TSL 2 BASIC15.12■□□□□ 0.01
Col6a6Q8C6K9 AV026068-207ENSMUST00000187718 400 ntTSL 5 BASIC15.12■□□□□ 0.01
Col6a6Q8C6K9 Gm44107-201ENSMUST00000203242 573 ntTSL 2 BASIC15.12■□□□□ 0.01
Col6a6Q8C6K9 Lmo1-203ENSMUST00000208136 772 ntTSL 2 BASIC15.12■□□□□ 0.01
Col6a6Q8C6K9 Psma5-201ENSMUST00000090569 1239 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Col6a6Q8C6K9 Evx2-201ENSMUST00000001867 4191 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Col6a6Q8C6K9 Myo16-204ENSMUST00000208309 2462 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Col6a6Q8C6K9 Chrm4-201ENSMUST00000045537 1440 ntAPPRIS P1 BASIC15.11■□□□□ 0.01
Col6a6Q8C6K9 Isyna1-201ENSMUST00000019283 1836 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Col6a6Q8C6K9 Ccdc88a-201ENSMUST00000040182 9376 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
Col6a6Q8C6K9 Sh2b1-203ENSMUST00000205440 3089 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Col6a6Q8C6K9 Sox4-201ENSMUST00000067230 4795 ntAPPRIS P1 BASIC15.11■□□□□ 0.01
Col6a6Q8C6K9 Fam105a-203ENSMUST00000226170 3043 ntBASIC15.11■□□□□ 0.01
Col6a6Q8C6K9 Frs3os-201ENSMUST00000136531 978 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Col6a6Q8C6K9 Hint3-203ENSMUST00000161074 875 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Col6a6Q8C6K9 Icam4-202ENSMUST00000215077 1028 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Col6a6Q8C6K9 Psmb5-202ENSMUST00000227257 622 ntBASIC15.11■□□□□ 0.01
Col6a6Q8C6K9 BC031181-201ENSMUST00000040284 1047 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Col6a6Q8C6K9 Atoh1-201ENSMUST00000101351 2121 ntAPPRIS P1 BASIC15.11■□□□□ 0.01
Col6a6Q8C6K9 Bean1-201ENSMUST00000093245 3199 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Col6a6Q8C6K9 Soga1-201ENSMUST00000069098 7864 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Col6a6Q8C6K9 Otx2-204ENSMUST00000122009 1737 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Col6a6Q8C6K9 Gm16897-201ENSMUST00000180780 2492 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Col6a6Q8C6K9 B3gnt2-202ENSMUST00000062844 3057 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Col6a6Q8C6K9 Lmo4-207ENSMUST00000196264 1263 ntTSL 5 BASIC15.1■□□□□ 0.01
Col6a6Q8C6K9 Wdyhv1-204ENSMUST00000226955 1094 ntBASIC15.1■□□□□ 0.01
Col6a6Q8C6K9 Gprc5b-201ENSMUST00000008878 4518 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
Col6a6Q8C6K9 Pfn2-201ENSMUST00000066882 2342 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Col6a6Q8C6K9 H2-Q7-202ENSMUST00000076256 1523 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.01
Col6a6Q8C6K9 Pced1a-202ENSMUST00000110277 1689 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Col6a6Q8C6K9 2610301B20Rik-201ENSMUST00000080517 2116 ntAPPRIS P2 TSL 1 (best) BASIC15.1■□□□□ 0.01
Col6a6Q8C6K9 Mtmr9-201ENSMUST00000058679 2570 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Col6a6Q8C6K9 Senp2-201ENSMUST00000023561 4499 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Col6a6Q8C6K9 Ddx19a-201ENSMUST00000040416 2547 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Col6a6Q8C6K9 Tmem245-202ENSMUST00000107609 2643 ntAPPRIS P2 TSL 5 BASIC15.1■□□□□ 0.01
Col6a6Q8C6K9 Foxp4-204ENSMUST00000113265 3999 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
Col6a6Q8C6K9 Gm28411-202ENSMUST00000191318 464 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Col6a6Q8C6K9 Aldoa-ps3-201ENSMUST00000217558 306 ntBASIC15.1■□□□□ 0.01
Col6a6Q8C6K9 Npcd-201ENSMUST00000023060 1162 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
Col6a6Q8C6K9 Prmt3-201ENSMUST00000032715 2507 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Col6a6Q8C6K9 Ccdc126-201ENSMUST00000055559 2351 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Col6a6Q8C6K9 Fhl3-201ENSMUST00000038684 1664 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Col6a6Q8C6K9 Elac2-203ENSMUST00000108697 2612 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.01
Col6a6Q8C6K9 Ilkap-201ENSMUST00000027534 1368 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Col6a6Q8C6K9 Fam129c-208ENSMUST00000143662 2267 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
Col6a6Q8C6K9 Nectin3-201ENSMUST00000023334 3062 ntAPPRIS P4 TSL 1 (best) BASIC15.1■□□□□ 0.01
Col6a6Q8C6K9 Cyth2-202ENSMUST00000107729 2519 ntAPPRIS P2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Col6a6Q8C6K9 Arid3b-202ENSMUST00000098686 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Col6a6Q8C6K9 Mfsd4a-203ENSMUST00000112370 2565 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Col6a6Q8C6K9 Lifr-202ENSMUST00000164529 2844 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Col6a6Q8C6K9 1700039E22Rik-201ENSMUST00000174082 770 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Col6a6Q8C6K9 Gm40849-201ENSMUST00000222330 603 ntTSL 3 BASIC15.09■□□□□ 0.01
Col6a6Q8C6K9 Rbpms-202ENSMUST00000033995 1039 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Col6a6Q8C6K9 Myl12b-201ENSMUST00000038446 1253 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Col6a6Q8C6K9 Ly6g6f-201ENSMUST00000038507 1141 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Col6a6Q8C6K9 Rhd-201ENSMUST00000030627 1514 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Col6a6Q8C6K9 Mfsd4b3-201ENSMUST00000095749 1787 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Col6a6Q8C6K9 Dbnl-203ENSMUST00000109845 2001 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Col6a6Q8C6K9 C1ql3-201ENSMUST00000061545 2535 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Col6a6Q8C6K9 Clint1-202ENSMUST00000109261 3365 ntAPPRIS ALT2 TSL 5 BASIC15.09■□□□□ 0.01
Col6a6Q8C6K9 Jdp2-202ENSMUST00000171754 1559 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Col6a6Q8C6K9 Bcl9l-206ENSMUST00000220303 5760 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Col6a6Q8C6K9 Amfr-201ENSMUST00000053766 3880 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Col6a6Q8C6K9 1110004F10Rik-203ENSMUST00000106608 927 ntTSL 3 BASIC15.09■□□□□ 0.01
Col6a6Q8C6K9 Gm11750-201ENSMUST00000146016 583 ntTSL 5 BASIC15.09■□□□□ 0.01
Col6a6Q8C6K9 Banf1-202ENSMUST00000170010 742 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Col6a6Q8C6K9 Gm44450-201ENSMUST00000199528 114 ntBASIC15.09■□□□□ 0.01
Col6a6Q8C6K9 Zfp787-205ENSMUST00000207957 880 ntTSL 5 BASIC15.09■□□□□ 0.01
Col6a6Q8C6K9 Nudt14-203ENSMUST00000221497 355 ntTSL 2 BASIC15.09■□□□□ 0.01
Col6a6Q8C6K9 Srrd-201ENSMUST00000031289 1110 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Col6a6Q8C6K9 F8a-201ENSMUST00000105111 2505 ntAPPRIS P1 BASIC15.09■□□□□ 0.01
Col6a6Q8C6K9 Ispd-207ENSMUST00000223205 2361 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Col6a6Q8C6K9 Mbp-201ENSMUST00000047865 2492 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Col6a6Q8C6K9 Ano10-206ENSMUST00000216670 2108 ntTSL 1 (best) BASIC15.08■□□□□ 0.01
Col6a6Q8C6K9 Mink1-205ENSMUST00000102559 4865 ntAPPRIS P4 TSL 1 (best) BASIC15.08■□□□□ 0.01
Retrieved 100 of 76,532 protein–RNA pairs in 29.3 ms