Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Abcg5-202ENSMUST00000163375 1613 ntTSL 5 BASIC19.84■□□□□ 0.77
Trim56Q80VI1 Dph1-201ENSMUST00000044949 2139 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Trim56Q80VI1 Cldn7-201ENSMUST00000018713 1335 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Trim56Q80VI1 Hes6-201ENSMUST00000086851 1335 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Trim56Q80VI1 Nr1h2-204ENSMUST00000107912 1839 ntAPPRIS P3 TSL 1 (best) BASIC19.84■□□□□ 0.77
Trim56Q80VI1 Dohh-202ENSMUST00000121047 946 ntTSL 2 BASIC19.84■□□□□ 0.77
Trim56Q80VI1 Gm9013-201ENSMUST00000132939 882 ntBASIC19.84■□□□□ 0.77
Trim56Q80VI1 AC156576.2-201ENSMUST00000222752 503 ntTSL 5 BASIC19.84■□□□□ 0.77
Trim56Q80VI1 Shc3-203ENSMUST00000223543 1241 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
Trim56Q80VI1 Taar2-201ENSMUST00000079134 1020 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Trim56Q80VI1 Zfp524-201ENSMUST00000086349 1142 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Trim56Q80VI1 Larp1-203ENSMUST00000178636 6617 ntAPPRIS P2 TSL 5 BASIC19.84■□□□□ 0.77
Trim56Q80VI1 Lmo4-203ENSMUST00000121796 1417 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Trim56Q80VI1 Ccser1-203ENSMUST00000126214 5657 ntAPPRIS P1 TSL 5 BASIC19.84■□□□□ 0.77
Trim56Q80VI1 Ewsr1-203ENSMUST00000079949 2588 ntAPPRIS P3 TSL 1 (best) BASIC19.84■□□□□ 0.77
Trim56Q80VI1 Atp2c1-201ENSMUST00000038118 4876 ntAPPRIS P3 TSL 1 (best) BASIC19.84■□□□□ 0.77
Trim56Q80VI1 Tm9sf1-205ENSMUST00000122358 2517 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Trim56Q80VI1 Rab40c-207ENSMUST00000167626 2506 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Trim56Q80VI1 Negr1-202ENSMUST00000074015 4983 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Trim56Q80VI1 Large2-215ENSMUST00000176810 2477 ntAPPRIS ALT2 TSL 5 BASIC19.83■□□□□ 0.77
Trim56Q80VI1 Mir770-201ENSMUST00000103252 94 ntBASIC19.83■□□□□ 0.77
Trim56Q80VI1 Cdpf1-204ENSMUST00000144067 761 ntAPPRIS P1 TSL 2 BASIC19.83■□□□□ 0.77
Trim56Q80VI1 Pafah1b3-201ENSMUST00000005583 901 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Trim56Q80VI1 Prss27-201ENSMUST00000059482 1253 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Trim56Q80VI1 Lhx6-205ENSMUST00000112967 3378 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
Trim56Q80VI1 Hoxa10-201ENSMUST00000121043 1436 ntAPPRIS P1 TSL 2 BASIC19.83■□□□□ 0.76
Trim56Q80VI1 Npm1-201ENSMUST00000075641 1633 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
Trim56Q80VI1 Scaf8-201ENSMUST00000076734 4869 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
Trim56Q80VI1 Enah-205ENSMUST00000177811 4231 ntAPPRIS ALT2 TSL 5 BASIC19.83■□□□□ 0.76
Trim56Q80VI1 Chpt1-201ENSMUST00000020253 3898 ntAPPRIS P3 TSL 1 (best) BASIC19.82■□□□□ 0.76
Trim56Q80VI1 Prkcg-202ENSMUST00000172109 2119 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
Trim56Q80VI1 Cxcl12-202ENSMUST00000112866 1878 ntAPPRIS ALT1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Trim56Q80VI1 Ptpdc1-204ENSMUST00000222028 3164 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
Trim56Q80VI1 Cryl1-201ENSMUST00000022517 1497 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Trim56Q80VI1 Gm36858-201ENSMUST00000194501 2391 ntBASIC19.82■□□□□ 0.76
Trim56Q80VI1 Lce1j-201ENSMUST00000107304 420 ntAPPRIS P1 BASIC19.82■□□□□ 0.76
Trim56Q80VI1 Gm29518-201ENSMUST00000190858 372 ntBASIC19.82■□□□□ 0.76
Trim56Q80VI1 Ndufs7-201ENSMUST00000020361 758 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Trim56Q80VI1 Eif3h-201ENSMUST00000022925 1295 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Trim56Q80VI1 4930465K10Rik-201ENSMUST00000056675 1238 ntBASIC19.82■□□□□ 0.76
Trim56Q80VI1 Gm7292-201ENSMUST00000194706 2527 ntBASIC19.82■□□□□ 0.76
Trim56Q80VI1 Appl2-201ENSMUST00000020500 3020 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Trim56Q80VI1 Taf6l-213ENSMUST00000189739 1794 ntTSL 5 BASIC19.82■□□□□ 0.76
Trim56Q80VI1 Dok7-202ENSMUST00000101298 2443 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
Trim56Q80VI1 Lhx8-205ENSMUST00000205251 1729 ntAPPRIS P1 TSL 5 BASIC19.82■□□□□ 0.76
Trim56Q80VI1 Hnrnph1-201ENSMUST00000069304 2225 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Trim56Q80VI1 Bean1-204ENSMUST00000171018 3386 ntAPPRIS P4 TSL 1 (best) BASIC19.81■□□□□ 0.76
Trim56Q80VI1 Drd2-201ENSMUST00000075764 2547 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Trim56Q80VI1 Coro1a-201ENSMUST00000032949 1660 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Trim56Q80VI1 Chd5-205ENSMUST00000164662 9375 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
Trim56Q80VI1 Fiz1-202ENSMUST00000165320 2653 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Trim56Q80VI1 Dnajc19-201ENSMUST00000011029 2499 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
Trim56Q80VI1 Rpf1-203ENSMUST00000199079 1978 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
Trim56Q80VI1 Bpifb4-203ENSMUST00000109759 2115 ntAPPRIS P2 TSL 5 BASIC19.81■□□□□ 0.76
Trim56Q80VI1 Dlg1-202ENSMUST00000064477 4663 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
Trim56Q80VI1 Rab37-202ENSMUST00000067754 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
Trim56Q80VI1 Gm15545-202ENSMUST00000141011 899 ntTSL 3 BASIC19.81■□□□□ 0.76
Trim56Q80VI1 Tppp3-201ENSMUST00000014990 1127 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Trim56Q80VI1 Qdpr-208ENSMUST00000197946 1206 ntTSL 5 BASIC19.81■□□□□ 0.76
Trim56Q80VI1 Nudt21-204ENSMUST00000212981 1184 ntTSL 3 BASIC19.81■□□□□ 0.76
Trim56Q80VI1 AC154471.1-201ENSMUST00000224418 436 ntBASIC19.81■□□□□ 0.76
Trim56Q80VI1 AC107711.5-202ENSMUST00000226429 702 ntBASIC19.81■□□□□ 0.76
Trim56Q80VI1 Nthl1-201ENSMUST00000047611 1080 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Trim56Q80VI1 Renbp-202ENSMUST00000116578 1418 ntAPPRIS P2 TSL 1 (best) BASIC19.81■□□□□ 0.76
Trim56Q80VI1 Fam131c-201ENSMUST00000006380 1433 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Trim56Q80VI1 Tmprss5-201ENSMUST00000070390 2047 ntAPPRIS P2 TSL 1 (best) BASIC19.81■□□□□ 0.76
Trim56Q80VI1 Lrrfip1-212ENSMUST00000189617 2155 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
Trim56Q80VI1 Myo16-204ENSMUST00000208309 2462 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
Trim56Q80VI1 Sf1-202ENSMUST00000113487 2649 ntAPPRIS ALT1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Trim56Q80VI1 Sos1-201ENSMUST00000068714 8919 ntAPPRIS P1 TSL 2 BASIC19.81■□□□□ 0.76
Trim56Q80VI1 Gpd1-203ENSMUST00000162194 1515 ntTSL 5 BASIC19.81■□□□□ 0.76
Trim56Q80VI1 Hoxc4-202ENSMUST00000165375 2121 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
Trim56Q80VI1 Nisch-208ENSMUST00000165981 2415 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
Trim56Q80VI1 Antxr2-202ENSMUST00000199088 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
Trim56Q80VI1 P2rx5-201ENSMUST00000006104 2395 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Trim56Q80VI1 Cxcl14-202ENSMUST00000224801 1467 ntBASIC19.8■□□□□ 0.76
Trim56Q80VI1 Cklf-208ENSMUST00000212433 1304 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
Trim56Q80VI1 Rps6ka2-201ENSMUST00000024575 5404 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Trim56Q80VI1 Pacsin3-202ENSMUST00000059566 1867 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Trim56Q80VI1 Mgea5-201ENSMUST00000026243 5024 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Trim56Q80VI1 Cdk9-202ENSMUST00000120105 1565 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
Trim56Q80VI1 Gm26568-201ENSMUST00000180496 1594 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
Trim56Q80VI1 Sntg2-201ENSMUST00000021004 2411 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Trim56Q80VI1 Fbxo6-208ENSMUST00000168503 1240 ntAPPRIS P1 TSL 2 BASIC19.8■□□□□ 0.76
Trim56Q80VI1 Bvht-202ENSMUST00000183087 588 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
Trim56Q80VI1 Psma6-201ENSMUST00000021412 1042 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Trim56Q80VI1 Stradb-201ENSMUST00000027185 2960 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Trim56Q80VI1 Exosc5-201ENSMUST00000079634 1020 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Trim56Q80VI1 Ccni-201ENSMUST00000058550 2804 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Trim56Q80VI1 Zkscan2-203ENSMUST00000128217 2218 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
Trim56Q80VI1 Secisbp2-202ENSMUST00000110044 1915 ntTSL 2 BASIC19.8■□□□□ 0.76
Trim56Q80VI1 Dok4-201ENSMUST00000046461 2590 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Trim56Q80VI1 Aspscr1-204ENSMUST00000106159 1615 ntTSL 5 BASIC19.8■□□□□ 0.76
Trim56Q80VI1 Ttyh1-217ENSMUST00000206869 1491 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
Trim56Q80VI1 Prss8-201ENSMUST00000032988 1852 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Trim56Q80VI1 Zfp326-201ENSMUST00000031227 2667 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Trim56Q80VI1 Wnk2-204ENSMUST00000110096 6534 ntAPPRIS ALT2 TSL 5 BASIC19.79■□□□□ 0.76
Trim56Q80VI1 Smarca4-201ENSMUST00000034707 6354 ntAPPRIS P3 TSL 1 (best) BASIC19.79■□□□□ 0.76
Trim56Q80VI1 Mprip-201ENSMUST00000066330 7765 ntAPPRIS ALT2 TSL 5 BASIC19.79■□□□□ 0.76
Trim56Q80VI1 Pard6g-201ENSMUST00000070219 3143 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Retrieved 100 of 76,532 protein–RNA pairs in 34.7 ms