Protein–RNA interactions for Protein: Q5QNQ9

Col27a1, Collagen alpha-1(XXVII) chain, mousemouse

Predictions only

Length 1,845 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col27a1Q5QNQ9 Borcs5-201ENSMUST00000062755 1764 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Col27a1Q5QNQ9 Pomp-201ENSMUST00000031654 1579 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Col27a1Q5QNQ9 Fhl2-201ENSMUST00000008280 1563 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Col27a1Q5QNQ9 Hmgb3-201ENSMUST00000015361 1544 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Col27a1Q5QNQ9 Scamp3-203ENSMUST00000120697 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
Col27a1Q5QNQ9 Hmgcl-201ENSMUST00000030432 1418 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Col27a1Q5QNQ9 Gm11467-201ENSMUST00000129407 674 ntTSL 3 BASIC16.21■□□□□ 0.19
Col27a1Q5QNQ9 Edn3-203ENSMUST00000140908 731 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.19
Col27a1Q5QNQ9 Gm43438-201ENSMUST00000198133 379 ntBASIC16.21■□□□□ 0.19
Col27a1Q5QNQ9 Gm38575-201ENSMUST00000213881 652 ntTSL 2 BASIC16.21■□□□□ 0.19
Col27a1Q5QNQ9 AC110091.2-202ENSMUST00000216718 1148 ntTSL 5 BASIC16.21■□□□□ 0.19
Col27a1Q5QNQ9 Crb3-201ENSMUST00000071826 1194 ntAPPRIS P3 TSL 3 BASIC16.21■□□□□ 0.19
Col27a1Q5QNQ9 Rpl30-202ENSMUST00000079735 886 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Col27a1Q5QNQ9 Pcna-ps2-201ENSMUST00000088040 1257 ntAPPRIS P1 BASIC16.21■□□□□ 0.19
Col27a1Q5QNQ9 Zfp777-202ENSMUST00000114583 3111 ntAPPRIS P3 TSL 5 BASIC16.21■□□□□ 0.19
Col27a1Q5QNQ9 Azi2-207ENSMUST00000134433 2499 ntTSL 1 (best) BASIC16.21■□□□□ 0.18
Col27a1Q5QNQ9 2310022B05Rik-201ENSMUST00000034464 3307 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
Col27a1Q5QNQ9 AL590614.2-201ENSMUST00000225374 1937 ntBASIC16.2■□□□□ 0.18
Col27a1Q5QNQ9 Slc38a10-202ENSMUST00000053692 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
Col27a1Q5QNQ9 Nsmf-206ENSMUST00000114388 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
Col27a1Q5QNQ9 Shkbp1-201ENSMUST00000003857 2358 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Col27a1Q5QNQ9 Smox-204ENSMUST00000110181 2299 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Col27a1Q5QNQ9 Vps53-203ENSMUST00000108419 2209 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Col27a1Q5QNQ9 Nkain4-202ENSMUST00000108873 865 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
Col27a1Q5QNQ9 Dlk1-203ENSMUST00000109842 1129 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Col27a1Q5QNQ9 Gm14104-201ENSMUST00000135990 356 ntTSL 5 BASIC16.2■□□□□ 0.18
Col27a1Q5QNQ9 Tmem51os1-202ENSMUST00000141769 2131 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Col27a1Q5QNQ9 Gm5253-201ENSMUST00000187104 1025 ntBASIC16.2■□□□□ 0.18
Col27a1Q5QNQ9 1700030N18Rik-201ENSMUST00000202497 966 ntBASIC16.2■□□□□ 0.18
Col27a1Q5QNQ9 Ndufv2-201ENSMUST00000024909 927 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Col27a1Q5QNQ9 Klk14-201ENSMUST00000056329 1271 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Col27a1Q5QNQ9 2610301B20Rik-201ENSMUST00000080517 2116 ntAPPRIS P2 TSL 1 (best) BASIC16.2■□□□□ 0.18
Col27a1Q5QNQ9 Gramd1a-201ENSMUST00000001280 2713 ntAPPRIS P2 TSL 1 (best) BASIC16.2■□□□□ 0.18
Col27a1Q5QNQ9 Ubald1-201ENSMUST00000037843 1851 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Col27a1Q5QNQ9 Rbms1-209ENSMUST00000164147 2543 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Col27a1Q5QNQ9 5730507C01Rik-201ENSMUST00000063216 2431 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
Col27a1Q5QNQ9 Tsc22d1-204ENSMUST00000110888 4999 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Col27a1Q5QNQ9 Med16-204ENSMUST00000165684 2950 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
Col27a1Q5QNQ9 Zpbp2-203ENSMUST00000107509 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
Col27a1Q5QNQ9 Gm9889-202ENSMUST00000206983 1577 ntBASIC16.2■□□□□ 0.18
Col27a1Q5QNQ9 Gjb1-202ENSMUST00000119080 1513 ntAPPRIS P1 TSL 3 BASIC16.2■□□□□ 0.18
Col27a1Q5QNQ9 Gm10616-201ENSMUST00000205285 2127 ntBASIC16.2■□□□□ 0.18
Col27a1Q5QNQ9 Pitx2-206ENSMUST00000174623 1493 ntTSL 2 BASIC16.2■□□□□ 0.18
Col27a1Q5QNQ9 2810039B14Rik-201ENSMUST00000183928 1459 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Col27a1Q5QNQ9 Dll3-201ENSMUST00000108315 2618 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Col27a1Q5QNQ9 Irak1-205ENSMUST00000114353 1896 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
Col27a1Q5QNQ9 Tmem123-201ENSMUST00000052865 2907 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Col27a1Q5QNQ9 Lcat-201ENSMUST00000038896 1342 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Col27a1Q5QNQ9 Tbkbp1-203ENSMUST00000107614 2391 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
Col27a1Q5QNQ9 Igf2-203ENSMUST00000105935 650 ntAPPRIS P1 TSL 3 BASIC16.19■□□□□ 0.18
Col27a1Q5QNQ9 AC139382.1-201ENSMUST00000221402 498 ntBASIC16.19■□□□□ 0.18
Col27a1Q5QNQ9 Ndufv3-202ENSMUST00000064798 485 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
Col27a1Q5QNQ9 Gm9949-201ENSMUST00000067743 962 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Col27a1Q5QNQ9 Klk15-201ENSMUST00000068625 845 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Col27a1Q5QNQ9 Mir22hg-202ENSMUST00000149940 1752 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Col27a1Q5QNQ9 Hrh3-201ENSMUST00000056480 2706 ntAPPRIS P2 TSL 1 (best) BASIC16.19■□□□□ 0.18
Col27a1Q5QNQ9 Mgat1-213ENSMUST00000167400 3151 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
Col27a1Q5QNQ9 Donson-201ENSMUST00000023682 2360 ntAPPRIS P2 TSL 1 (best) BASIC16.19■□□□□ 0.18
Col27a1Q5QNQ9 Cnot11-201ENSMUST00000003219 3162 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Col27a1Q5QNQ9 Shox2-201ENSMUST00000029422 3079 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Col27a1Q5QNQ9 Ddx41-204ENSMUST00000224765 2199 ntBASIC16.19■□□□□ 0.18
Col27a1Q5QNQ9 Dcaf17-202ENSMUST00000102701 1703 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Col27a1Q5QNQ9 Galnt9-201ENSMUST00000040001 2883 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Col27a1Q5QNQ9 Gm11025-201ENSMUST00000140773 466 ntBASIC16.19■□□□□ 0.18
Col27a1Q5QNQ9 Rab10os-206ENSMUST00000179908 746 ntTSL 5 BASIC16.19■□□□□ 0.18
Col27a1Q5QNQ9 Stum-205ENSMUST00000211561 1063 ntAPPRIS ALT1 TSL 5 BASIC16.19■□□□□ 0.18
Col27a1Q5QNQ9 Rpl28-202ENSMUST00000078432 772 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
Col27a1Q5QNQ9 Snai3-201ENSMUST00000006762 1628 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Col27a1Q5QNQ9 Abhd8-201ENSMUST00000008094 1978 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Col27a1Q5QNQ9 AC157650.3-201ENSMUST00000225058 1476 ntBASIC16.18■□□□□ 0.18
Col27a1Q5QNQ9 Pdgfa-202ENSMUST00000076095 2060 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Col27a1Q5QNQ9 Tmed4-201ENSMUST00000004508 2003 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Col27a1Q5QNQ9 Lcmt2-201ENSMUST00000099486 2047 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Col27a1Q5QNQ9 Tbc1d25-201ENSMUST00000039892 2648 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
Col27a1Q5QNQ9 Gm45188-201ENSMUST00000207592 1369 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Col27a1Q5QNQ9 Mettl27-202ENSMUST00000068617 1685 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Col27a1Q5QNQ9 Cyb5rl-204ENSMUST00000106760 840 ntTSL 3 BASIC16.18■□□□□ 0.18
Col27a1Q5QNQ9 Chchd7-208ENSMUST00000121651 620 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Col27a1Q5QNQ9 Fam241b-208ENSMUST00000142796 1135 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Col27a1Q5QNQ9 Psma6-204ENSMUST00000163070 787 ntTSL 5 BASIC16.18■□□□□ 0.18
Col27a1Q5QNQ9 Gm30684-201ENSMUST00000205632 600 ntTSL 3 BASIC16.18■□□□□ 0.18
Col27a1Q5QNQ9 Hapln3-202ENSMUST00000205782 930 ntTSL 5 BASIC16.18■□□□□ 0.18
Col27a1Q5QNQ9 2010107E04Rik-203ENSMUST00000222874 612 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
Col27a1Q5QNQ9 Chchd7-201ENSMUST00000041122 672 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Col27a1Q5QNQ9 Npb-201ENSMUST00000061309 418 ntTSL 3 BASIC16.18■□□□□ 0.18
Col27a1Q5QNQ9 Acyp2-201ENSMUST00000074613 863 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Col27a1Q5QNQ9 Slc29a1-222ENSMUST00000171847 2033 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
Col27a1Q5QNQ9 Srsf4-202ENSMUST00000053819 2257 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Col27a1Q5QNQ9 Spry1-202ENSMUST00000108107 2773 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Col27a1Q5QNQ9 Mvk-201ENSMUST00000043760 1660 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
Col27a1Q5QNQ9 Gm26568-201ENSMUST00000180496 1594 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Col27a1Q5QNQ9 Layn-204ENSMUST00000217212 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
Col27a1Q5QNQ9 Ncoa5-202ENSMUST00000121377 2930 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Col27a1Q5QNQ9 Naa10-203ENSMUST00000114387 979 ntAPPRIS ALT2 TSL 2 BASIC16.17■□□□□ 0.18
Col27a1Q5QNQ9 Gm14268-201ENSMUST00000132465 682 ntTSL 3 BASIC16.17■□□□□ 0.18
Col27a1Q5QNQ9 Gm20661-203ENSMUST00000177368 900 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
Col27a1Q5QNQ9 Smdt1-201ENSMUST00000023086 705 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Col27a1Q5QNQ9 Sumo1-201ENSMUST00000091374 1215 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Col27a1Q5QNQ9 Ncoa5-203ENSMUST00000122070 3117 ntTSL 5 BASIC16.17■□□□□ 0.18
Col27a1Q5QNQ9 BC017158-201ENSMUST00000033044 2627 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Retrieved 100 of 76,532 protein–RNA pairs in 97.2 ms