Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Grb7-201ENSMUST00000019456 2397 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Col28a1Q2UY11 Sh3yl1-202ENSMUST00000110880 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
Col28a1Q2UY11 Hpca-202ENSMUST00000095807 1666 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Col28a1Q2UY11 Cdk12-203ENSMUST00000107539 5912 ntAPPRIS ALT2 TSL 5 BASIC16.34■□□□□ 0.21
Col28a1Q2UY11 Disp3-201ENSMUST00000047720 5282 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.21
Col28a1Q2UY11 Jade2-202ENSMUST00000109090 6230 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.21
Col28a1Q2UY11 Mboat7-201ENSMUST00000038608 2878 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
Col28a1Q2UY11 Negr1-203ENSMUST00000106065 1953 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
Col28a1Q2UY11 A230103J11Rik-202ENSMUST00000156084 2086 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
Col28a1Q2UY11 Ell2-201ENSMUST00000001583 4382 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Col28a1Q2UY11 Sprn-201ENSMUST00000059241 3374 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Col28a1Q2UY11 Map2k5-201ENSMUST00000034920 2310 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Col28a1Q2UY11 Gm17509-201ENSMUST00000165680 2375 ntAPPRIS P1 BASIC16.33■□□□□ 0.2
Col28a1Q2UY11 9530068E07Rik-201ENSMUST00000036952 2467 ntAPPRIS P2 TSL 1 (best) BASIC16.33■□□□□ 0.2
Col28a1Q2UY11 Dvl2-207ENSMUST00000190940 5037 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Col28a1Q2UY11 Selenos-201ENSMUST00000101801 1191 ntAPPRIS P2 TSL 1 (best) BASIC16.33■□□□□ 0.2
Col28a1Q2UY11 Speg-203ENSMUST00000113588 1078 ntTSL 5 BASIC16.33■□□□□ 0.2
Col28a1Q2UY11 Gm11249-201ENSMUST00000117071 859 ntBASIC16.33■□□□□ 0.2
Col28a1Q2UY11 Pgap3-205ENSMUST00000128897 1264 ntTSL 5 BASIC16.33■□□□□ 0.2
Col28a1Q2UY11 Wnt10b-205ENSMUST00000226846 1204 ntBASIC16.33■□□□□ 0.2
Col28a1Q2UY11 AC154649.1-201ENSMUST00000227392 384 ntBASIC16.33■□□□□ 0.2
Col28a1Q2UY11 Ngb-201ENSMUST00000021420 1616 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
Col28a1Q2UY11 Mmd-202ENSMUST00000107887 1654 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Col28a1Q2UY11 Ino80e-203ENSMUST00000106343 1973 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Col28a1Q2UY11 Smpdl3a-201ENSMUST00000020022 1961 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Col28a1Q2UY11 Cask-203ENSMUST00000115436 8260 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.2
Col28a1Q2UY11 Rexo1-201ENSMUST00000057910 5250 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Col28a1Q2UY11 P2rx4-201ENSMUST00000031429 2702 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Col28a1Q2UY11 Gm4425-201ENSMUST00000172838 2857 ntTSL 2 BASIC16.32■□□□□ 0.2
Col28a1Q2UY11 Xpo4-209ENSMUST00000174545 8680 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Col28a1Q2UY11 Chsy3-201ENSMUST00000080721 2931 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Col28a1Q2UY11 Parg-204ENSMUST00000164137 3013 ntTSL 5 BASIC16.32■□□□□ 0.2
Col28a1Q2UY11 Fgfr1-214ENSMUST00000178276 4741 ntTSL 5 BASIC16.32■□□□□ 0.2
Col28a1Q2UY11 Kif5b-201ENSMUST00000025083 6032 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Col28a1Q2UY11 Dcxr-202ENSMUST00000106148 830 ntTSL 2 BASIC16.32■□□□□ 0.2
Col28a1Q2UY11 Sap18-201ENSMUST00000111267 660 ntTSL 2 BASIC16.32■□□□□ 0.2
Col28a1Q2UY11 Unc50-203ENSMUST00000118059 1179 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
Col28a1Q2UY11 Creb1-207ENSMUST00000187811 1255 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Col28a1Q2UY11 Tpgs1-201ENSMUST00000020552 1143 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Col28a1Q2UY11 Large1-204ENSMUST00000212459 4746 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Col28a1Q2UY11 Gm45709-201ENSMUST00000213052 1075 ntTSL 5 BASIC16.32■□□□□ 0.2
Col28a1Q2UY11 Atp6v1c1-201ENSMUST00000022904 2071 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Col28a1Q2UY11 Nme4-201ENSMUST00000025007 912 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Col28a1Q2UY11 Ccdc107-201ENSMUST00000030181 817 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Col28a1Q2UY11 Pex11a-201ENSMUST00000032761 2241 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Col28a1Q2UY11 Tspyl2-201ENSMUST00000044509 2696 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Col28a1Q2UY11 Fhl2-201ENSMUST00000008280 1563 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Col28a1Q2UY11 Polr1c-201ENSMUST00000087026 1314 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Col28a1Q2UY11 Tor2a-201ENSMUST00000009707 1536 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Col28a1Q2UY11 Pcsk5-202ENSMUST00000050715 5783 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Col28a1Q2UY11 Zscan29-203ENSMUST00000146243 2894 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Col28a1Q2UY11 Zfp318-201ENSMUST00000113481 7850 ntAPPRIS P4 TSL 5 BASIC16.32■□□□□ 0.2
Col28a1Q2UY11 Lrrtm1-203ENSMUST00000161677 2518 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Col28a1Q2UY11 Mdm1-204ENSMUST00000169817 2022 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Col28a1Q2UY11 Enoph1-202ENSMUST00000169390 1833 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Col28a1Q2UY11 Cend1-202ENSMUST00000124444 1733 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Col28a1Q2UY11 Bcs1l-202ENSMUST00000113732 1679 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
Col28a1Q2UY11 Sox4-201ENSMUST00000067230 4795 ntAPPRIS P1 BASIC16.31■□□□□ 0.2
Col28a1Q2UY11 Trmo-202ENSMUST00000086563 1554 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
Col28a1Q2UY11 Tm7sf2-202ENSMUST00000113543 1498 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Col28a1Q2UY11 Usp49-201ENSMUST00000024779 8252 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Col28a1Q2UY11 Plcl2-201ENSMUST00000043938 4050 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Col28a1Q2UY11 Tubb4b-ps1-201ENSMUST00000179460 1336 ntBASIC16.31■□□□□ 0.2
Col28a1Q2UY11 Mxd4-201ENSMUST00000042701 3872 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Col28a1Q2UY11 Sdr39u1-201ENSMUST00000111325 1255 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Col28a1Q2UY11 U2af1-201ENSMUST00000014684 907 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
Col28a1Q2UY11 U2af1-202ENSMUST00000166526 907 ntAPPRIS ALT2 TSL 2 BASIC16.31■□□□□ 0.2
Col28a1Q2UY11 Gm20390-201ENSMUST00000170303 991 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
Col28a1Q2UY11 Gm10698-201ENSMUST00000182663 604 ntBASIC16.31■□□□□ 0.2
Col28a1Q2UY11 Gm44549-201ENSMUST00000208351 577 ntBASIC16.31■□□□□ 0.2
Col28a1Q2UY11 Grp-201ENSMUST00000025395 862 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Col28a1Q2UY11 Snx27-201ENSMUST00000029783 6261 ntAPPRIS ALT1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Col28a1Q2UY11 Mcoln2-202ENSMUST00000098524 2492 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Col28a1Q2UY11 Chst2-201ENSMUST00000036267 7328 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Col28a1Q2UY11 Cadps2-201ENSMUST00000018122 4723 ntAPPRIS P3 TSL 5 BASIC16.31■□□□□ 0.2
Col28a1Q2UY11 Zkscan2-203ENSMUST00000128217 2218 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Col28a1Q2UY11 Chst10-206ENSMUST00000194361 2996 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Col28a1Q2UY11 E130307A14Rik-213ENSMUST00000155482 2803 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Col28a1Q2UY11 Vrk2-201ENSMUST00000078362 1889 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Col28a1Q2UY11 C430049E01Rik-201ENSMUST00000207913 1820 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Col28a1Q2UY11 Cxcl14-201ENSMUST00000021970 1827 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Col28a1Q2UY11 Luc7l2-208ENSMUST00000161538 4253 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Col28a1Q2UY11 Ubap1-202ENSMUST00000108060 2514 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Col28a1Q2UY11 Gsk3b-201ENSMUST00000023507 8303 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
Col28a1Q2UY11 2310002F09Rik-201ENSMUST00000181454 1607 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Col28a1Q2UY11 Flvcr1-201ENSMUST00000085635 4040 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Col28a1Q2UY11 Rgl1-202ENSMUST00000111857 3037 ntTSL 5 BASIC16.3■□□□□ 0.2
Col28a1Q2UY11 Cops7b-201ENSMUST00000027446 2231 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Col28a1Q2UY11 Edn2-201ENSMUST00000030384 1462 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Col28a1Q2UY11 Gm21596-201ENSMUST00000178049 1316 ntBASIC16.3■□□□□ 0.2
Col28a1Q2UY11 Shank1-203ENSMUST00000107938 9826 ntAPPRIS P2 TSL 5 BASIC16.3■□□□□ 0.2
Col28a1Q2UY11 Cenps-202ENSMUST00000105695 544 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Col28a1Q2UY11 Pigp-203ENSMUST00000113910 966 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Col28a1Q2UY11 Snca-201ENSMUST00000114268 1280 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Col28a1Q2UY11 1700007L15Rik-201ENSMUST00000180923 737 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Col28a1Q2UY11 Gm16475-201ENSMUST00000207306 512 ntTSL 2 BASIC16.3■□□□□ 0.2
Col28a1Q2UY11 AC153881.1-201ENSMUST00000214448 284 ntBASIC16.3■□□□□ 0.2
Col28a1Q2UY11 Prrg2-201ENSMUST00000007981 1295 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Col28a1Q2UY11 Prdm12-201ENSMUST00000113470 2471 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
Col28a1Q2UY11 Tbc1d12-201ENSMUST00000037302 4209 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Retrieved 100 of 76,532 protein–RNA pairs in 25.6 ms