Protein–RNA interactions for Protein: O35493

Clk4, Dual specificity protein kinase CLK4, mousemouse

Predictions only

Length 481 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clk4O35493 Adnp-202ENSMUST00000088001 4932 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Clk4O35493 Tmem47-203ENSMUST00000171953 1801 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Clk4O35493 Mink1-202ENSMUST00000072873 4610 ntAPPRIS ALT2 TSL 5 BASIC16.14■□□□□ 0.17
Clk4O35493 Hikeshi-206ENSMUST00000153470 2224 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Clk4O35493 Col15a1-201ENSMUST00000082303 5102 ntAPPRIS ALT2 TSL 2 BASIC16.14■□□□□ 0.17
Clk4O35493 Cacna1h-205ENSMUST00000159610 8230 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
Clk4O35493 Cacna1h-201ENSMUST00000078496 8220 ntAPPRIS P2 TSL 1 (best) BASIC16.14■□□□□ 0.17
Clk4O35493 Clvs2-203ENSMUST00000160299 2610 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
Clk4O35493 Sharpin-201ENSMUST00000023211 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Clk4O35493 Bambi-201ENSMUST00000025075 5040 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Clk4O35493 Gm2788-202ENSMUST00000147173 1390 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Clk4O35493 Nptn-212ENSMUST00000177292 1390 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
Clk4O35493 Lsm1-201ENSMUST00000038421 2663 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Clk4O35493 Ccnd3-202ENSMUST00000171031 2113 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
Clk4O35493 Nepro-201ENSMUST00000048788 2866 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Clk4O35493 Xpo4-209ENSMUST00000174545 8680 ntAPPRIS P2 TSL 1 (best) BASIC16.13■□□□□ 0.17
Clk4O35493 Carmn-201ENSMUST00000181155 1778 ntTSL 2 BASIC16.13■□□□□ 0.17
Clk4O35493 Kcnn1-208ENSMUST00000212611 2528 ntAPPRIS P2 TSL 1 (best) BASIC16.13■□□□□ 0.17
Clk4O35493 Cnksr2-201ENSMUST00000026750 5738 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Clk4O35493 Zar1-201ENSMUST00000073528 1429 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Clk4O35493 Ric3-202ENSMUST00000120876 1633 ntAPPRIS ALT1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Clk4O35493 Lonp1-201ENSMUST00000047226 2963 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Clk4O35493 Serac1-201ENSMUST00000024570 2033 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
Clk4O35493 Cask-203ENSMUST00000115436 8260 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
Clk4O35493 Gm6433-201ENSMUST00000118634 875 ntBASIC16.13■□□□□ 0.17
Clk4O35493 Gm15565-201ENSMUST00000118890 427 ntBASIC16.13■□□□□ 0.17
Clk4O35493 2210408F21Rik-213ENSMUST00000153057 652 ntTSL 3 BASIC16.13■□□□□ 0.17
Clk4O35493 Slc25a41-202ENSMUST00000169012 1172 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
Clk4O35493 Mir9-3hg-206ENSMUST00000182937 636 ntTSL 3 BASIC16.13■□□□□ 0.17
Clk4O35493 Gm2274-201ENSMUST00000184539 609 ntBASIC16.13■□□□□ 0.17
Clk4O35493 Rwdd1-201ENSMUST00000019917 1090 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Clk4O35493 Gm35240-201ENSMUST00000218335 661 ntTSL 2 BASIC16.13■□□□□ 0.17
Clk4O35493 Gm7791-201ENSMUST00000219066 539 ntBASIC16.13■□□□□ 0.17
Clk4O35493 Rgcc-201ENSMUST00000022595 918 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Clk4O35493 Faap20-201ENSMUST00000097747 1479 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
Clk4O35493 Yipf2-204ENSMUST00000213809 1883 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Clk4O35493 Gm42417-201ENSMUST00000191849 2256 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Clk4O35493 Sh3rf3-205ENSMUST00000153031 5682 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Clk4O35493 App-202ENSMUST00000226232 3120 ntAPPRIS ALT2 BASIC16.13■□□□□ 0.17
Clk4O35493 Nkpd1-202ENSMUST00000207576 2916 ntAPPRIS P2 TSL 5 BASIC16.13■□□□□ 0.17
Clk4O35493 Tmtc4-209ENSMUST00000148661 2719 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Clk4O35493 Trappc3-201ENSMUST00000030660 1336 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Clk4O35493 Lzts2-203ENSMUST00000179108 2781 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Clk4O35493 Zfp446-202ENSMUST00000108535 2594 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Clk4O35493 Rsph3a-201ENSMUST00000097423 2189 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Clk4O35493 Fam98a-201ENSMUST00000112507 2817 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Clk4O35493 Baz1a-205ENSMUST00000173433 5788 ntAPPRIS P2 TSL 5 BASIC16.13■□□□□ 0.17
Clk4O35493 2010016I18Rik-204ENSMUST00000190356 1562 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Clk4O35493 Lrrtm1-202ENSMUST00000159616 2541 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Clk4O35493 Gm28372-201ENSMUST00000188900 1876 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
Clk4O35493 Aipl1-201ENSMUST00000048207 2309 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Clk4O35493 Trp73-203ENSMUST00000105643 1916 ntAPPRIS ALT2 TSL 5 BASIC16.12■□□□□ 0.17
Clk4O35493 Abhd11-206ENSMUST00000154469 1473 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Clk4O35493 Sap18-201ENSMUST00000111267 660 ntTSL 2 BASIC16.12■□□□□ 0.17
Clk4O35493 Bad-202ENSMUST00000113423 990 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
Clk4O35493 Tm4sf19-201ENSMUST00000115149 1257 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Clk4O35493 Rpl18-ps2-201ENSMUST00000118863 567 ntBASIC16.12■□□□□ 0.17
Clk4O35493 Gm11539-201ENSMUST00000119837 557 ntBASIC16.12■□□□□ 0.17
Clk4O35493 Gm13436-201ENSMUST00000120418 567 ntBASIC16.12■□□□□ 0.17
Clk4O35493 Gm16120-201ENSMUST00000127990 808 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Clk4O35493 Gm14114-201ENSMUST00000139345 287 ntTSL 3 BASIC16.12■□□□□ 0.17
Clk4O35493 Mrpl21-201ENSMUST00000025743 802 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
Clk4O35493 Snapc3-202ENSMUST00000071544 942 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Clk4O35493 App-201ENSMUST00000005406 3176 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
Clk4O35493 Rasa2-201ENSMUST00000034984 5813 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Clk4O35493 Smpdl3b-201ENSMUST00000030709 2006 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Clk4O35493 Cep57-208ENSMUST00000147115 2262 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
Clk4O35493 Ppp1r1b-204ENSMUST00000137634 1343 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Clk4O35493 Anapc5-201ENSMUST00000086216 2760 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
Clk4O35493 Zfp697-202ENSMUST00000178372 4703 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
Clk4O35493 Btbd11-203ENSMUST00000105307 5788 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
Clk4O35493 Pde1c-203ENSMUST00000164037 3068 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Clk4O35493 Arrb2-203ENSMUST00000102563 1352 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Clk4O35493 B3galnt2-204ENSMUST00000221300 2397 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Clk4O35493 Itgb1bp1-201ENSMUST00000076260 1874 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Clk4O35493 Hivep3-201ENSMUST00000084306 2973 ntBASIC16.11■□□□□ 0.17
Clk4O35493 Wnt10b-206ENSMUST00000228546 2709 ntBASIC16.11■□□□□ 0.17
Clk4O35493 Odf2-211ENSMUST00000113767 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
Clk4O35493 Esrp1-202ENSMUST00000108310 2781 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
Clk4O35493 Agpat3-203ENSMUST00000105388 3681 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
Clk4O35493 Lrriq4-203ENSMUST00000172350 1797 ntAPPRIS P3 TSL 5 BASIC16.11■□□□□ 0.17
Clk4O35493 Gm45774-201ENSMUST00000211992 2665 ntBASIC16.11■□□□□ 0.17
Clk4O35493 Gm13474-201ENSMUST00000122466 815 ntBASIC16.11■□□□□ 0.17
Clk4O35493 Prr23a1-201ENSMUST00000170349 883 ntAPPRIS P1 BASIC16.11■□□□□ 0.17
Clk4O35493 Snrnp48-202ENSMUST00000178564 847 ntTSL 5 BASIC16.11■□□□□ 0.17
Clk4O35493 Gm3764-209ENSMUST00000181550 1093 ntTSL 3 BASIC16.11■□□□□ 0.17
Clk4O35493 Gm19426-201ENSMUST00000181711 726 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
Clk4O35493 Gm43799-201ENSMUST00000201845 579 ntBASIC16.11■□□□□ 0.17
Clk4O35493 Pfdn4-201ENSMUST00000063682 935 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Clk4O35493 Usf3-201ENSMUST00000088356 757 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
Clk4O35493 Dtnbp1-203ENSMUST00000220555 1589 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
Clk4O35493 Wasf1-202ENSMUST00000105509 2719 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
Clk4O35493 Fam110a-204ENSMUST00000109865 1853 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
Clk4O35493 Krt12-201ENSMUST00000017741 1852 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Clk4O35493 Gjb3-201ENSMUST00000046532 1880 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Clk4O35493 Mief1-203ENSMUST00000228788 5352 ntAPPRIS P1 BASIC16.11■□□□□ 0.17
Clk4O35493 Fxr1-201ENSMUST00000001620 2459 ntTSL 5 BASIC16.11■□□□□ 0.17
Clk4O35493 Bdkrb1-202ENSMUST00000182899 1313 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
Clk4O35493 Bdkrb1-201ENSMUST00000041229 1338 ntAPPRIS P1 BASIC16.11■□□□□ 0.17
Clk4O35493 Rprd1b-207ENSMUST00000152452 1910 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Retrieved 100 of 76,532 protein–RNA pairs in 70.7 ms