Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 MPDZ-202ENST00000319217 7722 ntAPPRIS ALT2 TSL 5 BASIC10.09□□□□□ -0.79
SHROOM4Q9ULL8 CTBS-202ENST00000370630 6600 ntAPPRIS P1 TSL 1 (best) BASIC10.09□□□□□ -0.79
SHROOM4Q9ULL8 AC007996.1-201ENST00000620414 2821 ntBASIC10.09□□□□□ -0.79
SHROOM4Q9ULL8 ICE2-201ENST00000261520 7209 ntAPPRIS P1 TSL 1 (best) BASIC10.09□□□□□ -0.79
SHROOM4Q9ULL8 FAS-203ENST00000355279 983 ntTSL 1 (best) BASIC10.09□□□□□ -0.79
SHROOM4Q9ULL8 OR2AM1P-201ENST00000422137 422 ntBASIC10.09□□□□□ -0.79
SHROOM4Q9ULL8 EI24P4-201ENST00000423683 1078 ntBASIC10.09□□□□□ -0.79
SHROOM4Q9ULL8 TRGV7-201ENST00000427089 353 ntBASIC10.09□□□□□ -0.79
SHROOM4Q9ULL8 KATNBL1P2-201ENST00000433311 835 ntBASIC10.09□□□□□ -0.79
SHROOM4Q9ULL8 AL359265.2-201ENST00000434367 631 ntBASIC10.09□□□□□ -0.79
SHROOM4Q9ULL8 LINC00380-201ENST00000442478 353 ntTSL 2 BASIC10.09□□□□□ -0.79
SHROOM4Q9ULL8 NDUFA12P1-201ENST00000455914 406 ntBASIC10.09□□□□□ -0.79
SHROOM4Q9ULL8 RNU7-157P-201ENST00000459600 66 ntBASIC10.09□□□□□ -0.79
SHROOM4Q9ULL8 AC092754.1-201ENST00000472975 479 ntBASIC10.09□□□□□ -0.79
SHROOM4Q9ULL8 LINC02185-201ENST00000575424 760 ntTSL 5 BASIC10.09□□□□□ -0.79
SHROOM4Q9ULL8 RN7SL690P-201ENST00000582087 240 ntBASIC10.09□□□□□ -0.79
SHROOM4Q9ULL8 H3F3BP2-201ENST00000583907 357 ntBASIC10.09□□□□□ -0.79
SHROOM4Q9ULL8 AC008555.3-201ENST00000603717 442 ntTSL 3 BASIC10.09□□□□□ -0.79
SHROOM4Q9ULL8 AC044839.1-205ENST00000614989 542 ntTSL 5 BASIC10.09□□□□□ -0.79
SHROOM4Q9ULL8 AC009704.2-201ENST00000618739 483 ntBASIC10.09□□□□□ -0.79
SHROOM4Q9ULL8 KIF2A-203ENST00000407818 2315 ntTSL 1 (best) BASIC10.09□□□□□ -0.79
SHROOM4Q9ULL8 OR12D2-207ENST00000642051 1496 ntAPPRIS P1 BASIC10.09□□□□□ -0.79
SHROOM4Q9ULL8 LINC00630-201ENST00000416381 2012 ntTSL 1 (best) BASIC10.09□□□□□ -0.79
SHROOM4Q9ULL8 PTPRD-214ENST00000540109 6210 ntAPPRIS P1 TSL 5 BASIC10.08□□□□□ -0.8
SHROOM4Q9ULL8 KCNA2-209ENST00000639048 10836 ntTSL 5 BASIC10.08□□□□□ -0.8
SHROOM4Q9ULL8 TRIP12-204ENST00000389045 5355 ntAPPRIS ALT2 TSL 1 (best) BASIC10.08□□□□□ -0.8
SHROOM4Q9ULL8 AC138907.8-201ENST00000623981 2256 ntBASIC10.08□□□□□ -0.8
SHROOM4Q9ULL8 U3.10-201ENST00000364459 214 ntBASIC10.08□□□□□ -0.8
SHROOM4Q9ULL8 ATXN10-203ENST00000402380 564 ntTSL 4 BASIC10.08□□□□□ -0.8
SHROOM4Q9ULL8 AL136979.1-201ENST00000421645 1120 ntTSL 3 BASIC10.08□□□□□ -0.8
SHROOM4Q9ULL8 RPL12P17-201ENST00000432393 498 ntBASIC10.08□□□□□ -0.8
SHROOM4Q9ULL8 AL450992.2-201ENST00000434182 506 ntTSL 5 BASIC10.08□□□□□ -0.8
SHROOM4Q9ULL8 AC062004.1-201ENST00000518706 686 ntTSL 3 BASIC10.08□□□□□ -0.8
SHROOM4Q9ULL8 AC008033.2-201ENST00000542626 177 ntBASIC10.08□□□□□ -0.8
SHROOM4Q9ULL8 AC005341.1-201ENST00000571086 708 ntBASIC10.08□□□□□ -0.8
SHROOM4Q9ULL8 AC011487.3-201ENST00000593607 453 ntBASIC10.08□□□□□ -0.8
SHROOM4Q9ULL8 AC079414.3-201ENST00000612986 1090 ntBASIC10.08□□□□□ -0.8
SHROOM4Q9ULL8 AL356752.1-201ENST00000615844 593 ntBASIC10.08□□□□□ -0.8
SHROOM4Q9ULL8 AC004158.1-201ENST00000564508 4319 ntBASIC10.08□□□□□ -0.8
SHROOM4Q9ULL8 MEIOB-205ENST00000470044 1857 ntTSL 2 BASIC10.07□□□□□ -0.8
SHROOM4Q9ULL8 SLC12A6-216ENST00000560164 3744 ntTSL 2 BASIC10.07□□□□□ -0.8
SHROOM4Q9ULL8 MIR105-1-201ENST00000385222 81 ntBASIC10.07□□□□□ -0.8
SHROOM4Q9ULL8 AL050305.1-201ENST00000399993 1230 ntBASIC10.07□□□□□ -0.8
SHROOM4Q9ULL8 MTERF4-204ENST00000406593 802 ntTSL 2 BASIC10.07□□□□□ -0.8
SHROOM4Q9ULL8 AL035696.2-201ENST00000407941 709 ntBASIC10.07□□□□□ -0.8
SHROOM4Q9ULL8 ARPP21-215ENST00000432682 1015 ntTSL 5 BASIC10.07□□□□□ -0.8
SHROOM4Q9ULL8 RPS4XP20-201ENST00000505751 772 ntBASIC10.07□□□□□ -0.8
SHROOM4Q9ULL8 AP003696.1-201ENST00000519337 770 ntTSL 3 BASIC10.07□□□□□ -0.8
SHROOM4Q9ULL8 AC068789.1-201ENST00000547942 577 ntTSL 2 BASIC10.07□□□□□ -0.8
SHROOM4Q9ULL8 AC015912.1-201ENST00000574826 538 ntTSL 3 BASIC10.07□□□□□ -0.8
SHROOM4Q9ULL8 AC087468.1-201ENST00000604365 630 ntBASIC10.07□□□□□ -0.8
SHROOM4Q9ULL8 PHLPP2-201ENST00000393524 8467 ntTSL 2 BASIC10.07□□□□□ -0.8
SHROOM4Q9ULL8 LRRC37A3-204ENST00000400877 3273 ntTSL 2 BASIC10.07□□□□□ -0.8
SHROOM4Q9ULL8 ATF2-201ENST00000264110 4176 ntTSL 1 (best) BASIC10.07□□□□□ -0.8
SHROOM4Q9ULL8 MLH3-201ENST00000355774 7896 ntAPPRIS P1 TSL 5 BASIC10.07□□□□□ -0.8
SHROOM4Q9ULL8 IPCEF1-202ENST00000367220 1658 ntAPPRIS ALT2 TSL 2 BASIC10.07□□□□□ -0.8
SHROOM4Q9ULL8 MECOM-209ENST00000472280 3593 ntTSL 5 BASIC10.07□□□□□ -0.8
SHROOM4Q9ULL8 CACNA1E-210ENST00000621791 16171 ntAPPRIS ALT2 TSL 1 (best) BASIC10.07□□□□□ -0.8
SHROOM4Q9ULL8 SH3YL1-203ENST00000403657 3540 ntTSL 2 BASIC10.06□□□□□ -0.8
SHROOM4Q9ULL8 POSTN-204ENST00000379749 3210 ntTSL 5 BASIC10.06□□□□□ -0.8
SHROOM4Q9ULL8 FOXN2-203ENST00000616844 1414 ntTSL 5 BASIC10.06□□□□□ -0.8
SHROOM4Q9ULL8 RPL11P3-201ENST00000395256 523 ntBASIC10.06□□□□□ -0.8
SHROOM4Q9ULL8 RNF10P1-201ENST00000418589 369 ntBASIC10.06□□□□□ -0.8
SHROOM4Q9ULL8 AC013268.2-201ENST00000420753 337 ntBASIC10.06□□□□□ -0.8
SHROOM4Q9ULL8 AC007064.3-201ENST00000422608 359 ntBASIC10.06□□□□□ -0.8
SHROOM4Q9ULL8 DNAJC19P7-201ENST00000428811 344 ntBASIC10.06□□□□□ -0.8
SHROOM4Q9ULL8 AC074327.1-202ENST00000443523 369 ntTSL 2 BASIC10.06□□□□□ -0.8
SHROOM4Q9ULL8 AC115618.2-201ENST00000453810 450 ntTSL 3 BASIC10.06□□□□□ -0.8
SHROOM4Q9ULL8 BMPR1B-204ENST00000502683 567 ntTSL 4 BASIC10.06□□□□□ -0.8
SHROOM4Q9ULL8 LINC02231-201ENST00000510459 447 ntTSL 3 BASIC10.06□□□□□ -0.8
SHROOM4Q9ULL8 AC139722.1-201ENST00000512502 782 ntTSL 3 BASIC10.06□□□□□ -0.8
SHROOM4Q9ULL8 AZIN1-AS1-203ENST00000517996 756 ntTSL 3 BASIC10.06□□□□□ -0.8
SHROOM4Q9ULL8 AC079089.1-202ENST00000528800 1256 ntTSL 1 (best) BASIC10.06□□□□□ -0.8
SHROOM4Q9ULL8 AP006289.1-201ENST00000538089 277 ntBASIC10.06□□□□□ -0.8
SHROOM4Q9ULL8 YWHABP2-201ENST00000540201 713 ntBASIC10.06□□□□□ -0.8
SHROOM4Q9ULL8 LINC02327-203ENST00000550122 738 ntTSL 2 BASIC10.06□□□□□ -0.8
SHROOM4Q9ULL8 AC074031.1-201ENST00000550634 734 ntTSL 3 BASIC10.06□□□□□ -0.8
SHROOM4Q9ULL8 BGLT3-201ENST00000564523 994 ntBASIC10.06□□□□□ -0.8
SHROOM4Q9ULL8 AC234775.3-201ENST00000564612 656 ntBASIC10.06□□□□□ -0.8
SHROOM4Q9ULL8 NUFIP2-202ENST00000579665 559 ntTSL 1 (best) BASIC10.06□□□□□ -0.8
SHROOM4Q9ULL8 AC010615.3-201ENST00000597319 394 ntBASIC10.06□□□□□ -0.8
SHROOM4Q9ULL8 SRD5A3-AS1-209ENST00000598819 552 ntTSL 5 BASIC10.06□□□□□ -0.8
SHROOM4Q9ULL8 AL031320.1-201ENST00000604177 357 ntBASIC10.06□□□□□ -0.8
SHROOM4Q9ULL8 AC018690.1-201ENST00000608144 626 ntBASIC10.06□□□□□ -0.8
SHROOM4Q9ULL8 AC003973.3-201ENST00000624863 2822 ntBASIC10.06□□□□□ -0.8
SHROOM4Q9ULL8 BPIFC-201ENST00000300399 1980 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.8
SHROOM4Q9ULL8 CREM-202ENST00000342105 1541 ntTSL 1 (best) BASIC10.06□□□□□ -0.8
SHROOM4Q9ULL8 TCF7L2-217ENST00000536810 3953 ntTSL 1 (best) BASIC10.06□□□□□ -0.8
SHROOM4Q9ULL8 CDKL3-209ENST00000523054 1775 ntTSL 2 BASIC10.06□□□□□ -0.8
SHROOM4Q9ULL8 LMNTD1-207ENST00000539744 1729 ntAPPRIS ALT2 TSL 1 (best) BASIC10.06□□□□□ -0.8
SHROOM4Q9ULL8 LINC00624-202ENST00000621316 3372 ntTSL 1 (best) BASIC10.05□□□□□ -0.8
SHROOM4Q9ULL8 UPF2-201ENST00000356352 5569 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
SHROOM4Q9ULL8 SIRPD-201ENST00000381621 823 ntAPPRIS ALT2 TSL 3 BASIC10.05□□□□□ -0.8
SHROOM4Q9ULL8 SNORD56.6-201ENST00000384569 71 ntBASIC10.05□□□□□ -0.8
SHROOM4Q9ULL8 OR10T1P-201ENST00000424327 947 ntBASIC10.05□□□□□ -0.8
SHROOM4Q9ULL8 RPL10P17-201ENST00000453852 316 ntBASIC10.05□□□□□ -0.8
SHROOM4Q9ULL8 TRBV2-201ENST00000455382 421 ntAPPRIS P1 BASIC10.05□□□□□ -0.8
SHROOM4Q9ULL8 AC103987.1-201ENST00000473394 348 ntBASIC10.05□□□□□ -0.8
SHROOM4Q9ULL8 HPRT1P1-201ENST00000509498 657 ntBASIC10.05□□□□□ -0.8
SHROOM4Q9ULL8 RN7SKP21-201ENST00000516503 220 ntBASIC10.05□□□□□ -0.8
Retrieved 100 of 98,524 protein–RNA pairs in 90.3 ms