Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 WFDC11-201ENST00000324384 614 ntAPPRIS P1 TSL 1 (best) BASIC7.27□□□□□ -1.25
CCDC39Q9UFE4 OR52E6-201ENST00000329322 970 ntAPPRIS P1 BASIC7.27□□□□□ -1.25
CCDC39Q9UFE4 SPATA42-201ENST00000369989 535 ntTSL 1 (best) BASIC7.27□□□□□ -1.25
CCDC39Q9UFE4 TXNDC8-203ENST00000374511 472 ntAPPRIS ALT2 TSL 5 BASIC7.27□□□□□ -1.25
CCDC39Q9UFE4 AC073626.1-201ENST00000415146 582 ntTSL 4 BASIC7.27□□□□□ -1.25
CCDC39Q9UFE4 AL020993.1-201ENST00000420172 297 ntTSL 3 BASIC7.27□□□□□ -1.25
CCDC39Q9UFE4 AC006509.1-201ENST00000420788 634 ntBASIC7.27□□□□□ -1.25
CCDC39Q9UFE4 AC007562.1-201ENST00000421819 517 ntBASIC7.27□□□□□ -1.25
CCDC39Q9UFE4 AC025038.1-201ENST00000433249 336 ntTSL 3 BASIC7.27□□□□□ -1.25
CCDC39Q9UFE4 COL11A2P1-205ENST00000441798 676 ntBASIC7.27□□□□□ -1.25
CCDC39Q9UFE4 PCBP1-AS1-232ENST00000442040 1111 ntTSL 3 BASIC7.27□□□□□ -1.25
CCDC39Q9UFE4 CUBNP2-201ENST00000443534 1139 ntBASIC7.27□□□□□ -1.25
CCDC39Q9UFE4 RPL5P10-201ENST00000445207 894 ntBASIC7.27□□□□□ -1.25
CCDC39Q9UFE4 AC023274.2-201ENST00000445264 521 ntBASIC7.27□□□□□ -1.25
CCDC39Q9UFE4 REG1CP-206ENST00000447469 496 ntBASIC7.27□□□□□ -1.25
CCDC39Q9UFE4 AL118496.2-201ENST00000448300 230 ntBASIC7.27□□□□□ -1.25
CCDC39Q9UFE4 MTND2P24-201ENST00000453434 806 ntBASIC7.27□□□□□ -1.25
CCDC39Q9UFE4 AC115618.2-201ENST00000453810 450 ntTSL 3 BASIC7.27□□□□□ -1.25
CCDC39Q9UFE4 RN7SL790P-201ENST00000474043 298 ntBASIC7.27□□□□□ -1.25
CCDC39Q9UFE4 AC011037.1-201ENST00000483964 558 ntBASIC7.27□□□□□ -1.25
CCDC39Q9UFE4 RPS7P11-201ENST00000484240 586 ntBASIC7.27□□□□□ -1.25
CCDC39Q9UFE4 PGRMC2-204ENST00000503872 1028 ntTSL 3 BASIC7.27□□□□□ -1.25
CCDC39Q9UFE4 AC108159.1-201ENST00000505408 489 ntTSL 3 BASIC7.27□□□□□ -1.25
CCDC39Q9UFE4 AC010424.1-201ENST00000506336 297 ntBASIC7.27□□□□□ -1.25
CCDC39Q9UFE4 AC093870.1-201ENST00000506837 213 ntBASIC7.27□□□□□ -1.25
CCDC39Q9UFE4 AC138938.1-201ENST00000515431 782 ntBASIC7.27□□□□□ -1.25
CCDC39Q9UFE4 IGKV1D-22-201ENST00000518953 324 ntBASIC7.27□□□□□ -1.25
CCDC39Q9UFE4 AC087276.4-201ENST00000530042 444 ntTSL 3 BASIC7.27□□□□□ -1.25
CCDC39Q9UFE4 AC104009.1-203ENST00000531304 571 ntTSL 4 BASIC7.27□□□□□ -1.25
CCDC39Q9UFE4 EBAG9-207ENST00000531677 777 ntTSL 1 (best) BASIC7.27□□□□□ -1.25
CCDC39Q9UFE4 AC022075.3-201ENST00000539009 649 ntTSL 3 BASIC7.27□□□□□ -1.25
CCDC39Q9UFE4 NR1H4-204ENST00000546380 565 ntTSL 3 BASIC7.27□□□□□ -1.25
CCDC39Q9UFE4 AL157756.1-203ENST00000553269 600 ntTSL 3 BASIC7.27□□□□□ -1.25
CCDC39Q9UFE4 SYNE2-210ENST00000553455 674 ntTSL 2 BASIC7.27□□□□□ -1.25
CCDC39Q9UFE4 AL133163.3-201ENST00000556448 504 ntTSL 5 BASIC7.27□□□□□ -1.25
CCDC39Q9UFE4 AC103740.1-202ENST00000558404 542 ntTSL 4 BASIC7.27□□□□□ -1.25
CCDC39Q9UFE4 STRADA-207ENST00000578008 1153 ntTSL 5 BASIC7.27□□□□□ -1.25
CCDC39Q9UFE4 SYPL1P2-201ENST00000582878 727 ntBASIC7.27□□□□□ -1.25
CCDC39Q9UFE4 AC069366.1-201ENST00000583159 838 ntBASIC7.27□□□□□ -1.25
CCDC39Q9UFE4 ELOCP28-201ENST00000590044 317 ntBASIC7.27□□□□□ -1.25
CCDC39Q9UFE4 AC113137.1-201ENST00000591869 558 ntTSL 4 BASIC7.27□□□□□ -1.25
CCDC39Q9UFE4 AC112230.1-201ENST00000604342 547 ntBASIC7.27□□□□□ -1.25
CCDC39Q9UFE4 AL645927.2-201ENST00000618350 349 ntBASIC7.27□□□□□ -1.25
CCDC39Q9UFE4 AL356121.2-201ENST00000624715 780 ntBASIC7.27□□□□□ -1.25
CCDC39Q9UFE4 AC010608.2-201ENST00000624830 470 ntBASIC7.27□□□□□ -1.25
CCDC39Q9UFE4 AC098617.1-218ENST00000628836 624 ntTSL 5 BASIC7.27□□□□□ -1.25
CCDC39Q9UFE4 AC000095.2-202ENST00000637415 154 ntBASIC7.27□□□□□ -1.25
CCDC39Q9UFE4 FBXW12-204ENST00000445170 1379 ntTSL 1 (best) BASIC7.27□□□□□ -1.25
CCDC39Q9UFE4 BABAM2-206ENST00000379632 1752 ntTSL 1 (best) BASIC7.27□□□□□ -1.25
CCDC39Q9UFE4 AL606516.1-201ENST00000455438 1861 ntTSL 2 BASIC7.27□□□□□ -1.25
CCDC39Q9UFE4 TM4SF20-201ENST00000304568 2296 ntAPPRIS P1 TSL 1 (best) BASIC7.27□□□□□ -1.25
CCDC39Q9UFE4 FP236241.1-201ENST00000623374 7632 ntTSL 1 (best) BASIC7.27□□□□□ -1.25
CCDC39Q9UFE4 CU633967.1-211ENST00000624444 7628 ntTSL 1 (best) BASIC7.27□□□□□ -1.25
CCDC39Q9UFE4 ENPP2-208ENST00000522826 2667 ntAPPRIS ALT1 TSL 1 (best) BASIC7.27□□□□□ -1.25
CCDC39Q9UFE4 ENPP2-201ENST00000075322 2651 ntAPPRIS ALT1 TSL 1 (best) BASIC7.27□□□□□ -1.25
CCDC39Q9UFE4 C16orf62-204ENST00000448695 3353 ntTSL 5 BASIC7.27□□□□□ -1.25
CCDC39Q9UFE4 C16orf62-216ENST00000543152 3352 ntTSL 1 (best) BASIC7.27□□□□□ -1.25
CCDC39Q9UFE4 R3HDM1-202ENST00000409478 4272 ntTSL 1 (best) BASIC7.27□□□□□ -1.25
CCDC39Q9UFE4 NLRP8-201ENST00000291971 3934 ntAPPRIS P3 TSL 1 (best) BASIC7.27□□□□□ -1.25
CCDC39Q9UFE4 AC106799.3-201ENST00000562127 3300 ntTSL 2 BASIC7.27□□□□□ -1.25
CCDC39Q9UFE4 MYBL1-206ENST00000524176 2148 ntTSL 1 (best) BASIC7.27□□□□□ -1.25
CCDC39Q9UFE4 AC004656.1-201ENST00000568479 4951 ntBASIC7.27□□□□□ -1.25
CCDC39Q9UFE4 ADGRL3-210ENST00000508946 4758 ntAPPRIS ALT2 TSL 5 BASIC7.27□□□□□ -1.25
CCDC39Q9UFE4 AGBL1-201ENST00000441037 3551 ntAPPRIS ALT2 TSL 5 BASIC7.26□□□□□ -1.25
CCDC39Q9UFE4 RAB30-214ENST00000534141 3746 ntTSL 1 (best) BASIC7.26□□□□□ -1.25
CCDC39Q9UFE4 EIF4E-203ENST00000450253 11523 ntAPPRIS P1 TSL 1 (best) BASIC7.26□□□□□ -1.25
CCDC39Q9UFE4 PCGF5-204ENST00000543648 7144 ntAPPRIS P1 TSL 2 BASIC7.26□□□□□ -1.25
CCDC39Q9UFE4 SELE-204ENST00000367776 3576 ntTSL 5 BASIC7.26□□□□□ -1.25
CCDC39Q9UFE4 SELE-205ENST00000367777 3576 ntTSL 5 BASIC7.26□□□□□ -1.25
CCDC39Q9UFE4 POU1F1-202ENST00000350375 1491 ntAPPRIS P1 TSL 1 (best) BASIC7.26□□□□□ -1.25
CCDC39Q9UFE4 TCP1P3-201ENST00000414406 1498 ntBASIC7.26□□□□□ -1.25
CCDC39Q9UFE4 LRRC39-202ENST00000370137 1396 ntAPPRIS P1 TSL 1 (best) BASIC7.26□□□□□ -1.25
CCDC39Q9UFE4 ELMO1-207ENST00000442504 3154 ntAPPRIS P1 TSL 2 BASIC7.26□□□□□ -1.25
CCDC39Q9UFE4 FAM183A-201ENST00000335282 488 ntAPPRIS P1 TSL 2 BASIC7.26□□□□□ -1.25
CCDC39Q9UFE4 Y_RNA.813-201ENST00000364639 102 ntBASIC7.26□□□□□ -1.25
CCDC39Q9UFE4 PAGE2B-201ENST00000374971 493 ntAPPRIS P1 TSL 1 (best) BASIC7.26□□□□□ -1.25
CCDC39Q9UFE4 AKR1C1-201ENST00000380859 858 ntTSL 3 BASIC7.26□□□□□ -1.25
CCDC39Q9UFE4 SLC3A1-203ENST00000409294 792 ntTSL 2 BASIC7.26□□□□□ -1.25
CCDC39Q9UFE4 FAM183A-205ENST00000410048 500 ntTSL 3 BASIC7.26□□□□□ -1.25
CCDC39Q9UFE4 AL160163.1-201ENST00000417465 403 ntTSL 3 BASIC7.26□□□□□ -1.25
CCDC39Q9UFE4 AC011752.1-203ENST00000417609 582 ntTSL 2 BASIC7.26□□□□□ -1.25
CCDC39Q9UFE4 AL606534.4-201ENST00000427176 792 ntTSL 5 BASIC7.26□□□□□ -1.25
CCDC39Q9UFE4 AL590399.2-201ENST00000427536 309 ntBASIC7.26□□□□□ -1.25
CCDC39Q9UFE4 AL122010.1-201ENST00000429293 720 ntTSL 2 BASIC7.26□□□□□ -1.25
CCDC39Q9UFE4 AF212831.1-201ENST00000430064 377 ntTSL 3 BASIC7.26□□□□□ -1.25
CCDC39Q9UFE4 OR2B8P-201ENST00000432841 938 ntBASIC7.26□□□□□ -1.25
CCDC39Q9UFE4 AC129850.1-201ENST00000436203 508 ntBASIC7.26□□□□□ -1.25
CCDC39Q9UFE4 Z74696.2-201ENST00000436514 498 ntBASIC7.26□□□□□ -1.25
CCDC39Q9UFE4 AL138767.3-201ENST00000438082 495 ntTSL 3 BASIC7.26□□□□□ -1.25
CCDC39Q9UFE4 AC234771.4-201ENST00000441416 730 ntBASIC7.26□□□□□ -1.25
CCDC39Q9UFE4 HMGN1P32-201ENST00000441744 256 ntBASIC7.26□□□□□ -1.25
CCDC39Q9UFE4 AL020997.1-201ENST00000446554 349 ntBASIC7.26□□□□□ -1.25
CCDC39Q9UFE4 RHEBP2-201ENST00000450289 600 ntBASIC7.26□□□□□ -1.25
CCDC39Q9UFE4 RPL31P11-202ENST00000454082 372 ntBASIC7.26□□□□□ -1.25
CCDC39Q9UFE4 RNU7-157P-201ENST00000459600 66 ntBASIC7.26□□□□□ -1.25
CCDC39Q9UFE4 RN7SL221P-201ENST00000466190 281 ntBASIC7.26□□□□□ -1.25
CCDC39Q9UFE4 SNRPCP3-201ENST00000474888 476 ntBASIC7.26□□□□□ -1.25
CCDC39Q9UFE4 STRADBP1-201ENST00000478954 1281 ntBASIC7.26□□□□□ -1.25
CCDC39Q9UFE4 AC106800.3-201ENST00000511389 308 ntBASIC7.26□□□□□ -1.25
CCDC39Q9UFE4 VCAN-AS1-201ENST00000512090 424 ntTSL 3 BASIC7.26□□□□□ -1.25
Retrieved 100 of 98,524 protein–RNA pairs in 86.9 ms