Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 ZNF83-204ENST00000545872 2633 ntAPPRIS P1 TSL 2 BASIC8.52□□□□□ -1.05
CUX1P39880 OR6C4-203ENST00000641851 4989 ntAPPRIS P1 BASIC8.52□□□□□ -1.05
CUX1P39880 ACACA-240ENST00000617649 7912 ntTSL 5 BASIC8.51□□□□□ -1.05
CUX1P39880 TRAT1-202ENST00000426646 1596 ntTSL 1 (best) BASIC8.51□□□□□ -1.05
CUX1P39880 AP1M1-201ENST00000291439 13193 ntAPPRIS P1 TSL 1 (best) BASIC8.51□□□□□ -1.05
CUX1P39880 ZNF83-202ENST00000536937 2726 ntAPPRIS P1 TSL 2 BASIC8.51□□□□□ -1.05
CUX1P39880 TSHZ2-202ENST00000371497 12187 ntAPPRIS P1 TSL 1 (best) BASIC8.51□□□□□ -1.05
CUX1P39880 GAPVD1-202ENST00000297933 6003 ntAPPRIS ALT2 TSL 1 (best) BASIC8.51□□□□□ -1.05
CUX1P39880 OR2J3-201ENST00000377169 1325 ntAPPRIS P1 BASIC8.51□□□□□ -1.05
CUX1P39880 RPE65-201ENST00000262340 2610 ntAPPRIS P1 TSL 1 (best) BASIC8.51□□□□□ -1.05
CUX1P39880 RASGRP1-209ENST00000559830 1910 ntTSL 1 (best) BASIC8.51□□□□□ -1.05
CUX1P39880 AL590240.1-201ENST00000334118 313 ntBASIC8.51□□□□□ -1.05
CUX1P39880 DEFB119-203ENST00000376321 457 ntAPPRIS P3 TSL 1 (best) BASIC8.51□□□□□ -1.05
CUX1P39880 U3.30-201ENST00000391308 210 ntBASIC8.51□□□□□ -1.05
CUX1P39880 ATP5HP3-201ENST00000396994 486 ntBASIC8.51□□□□□ -1.05
CUX1P39880 AL049697.2-201ENST00000403708 294 ntBASIC8.51□□□□□ -1.05
CUX1P39880 RN7SKP248-201ENST00000516278 305 ntBASIC8.51□□□□□ -1.05
CUX1P39880 ASB8-204ENST00000536071 568 ntTSL 4 BASIC8.51□□□□□ -1.05
CUX1P39880 AC019322.1-201ENST00000571869 389 ntBASIC8.51□□□□□ -1.05
CUX1P39880 MIR6839-201ENST00000620425 113 ntBASIC8.51□□□□□ -1.05
CUX1P39880 AC016717.3-201ENST00000624730 554 ntBASIC8.51□□□□□ -1.05
CUX1P39880 AMY1B-201ENST00000330330 1862 ntAPPRIS P1 TSL 1 (best) BASIC8.51□□□□□ -1.05
CUX1P39880 ZRANB3-202ENST00000401392 6820 ntAPPRIS ALT2 TSL 1 (best) BASIC8.51□□□□□ -1.05
CUX1P39880 CTNNA2-202ENST00000361291 3071 ntTSL 5 BASIC8.51□□□□□ -1.05
CUX1P39880 OGT-202ENST00000373719 5461 ntAPPRIS P3 TSL 1 (best) BASIC8.51□□□□□ -1.05
CUX1P39880 ZNF658-201ENST00000612867 4160 ntAPPRIS P1 TSL 2 BASIC8.51□□□□□ -1.05
CUX1P39880 KBTBD8-201ENST00000417314 4680 ntAPPRIS P1 TSL 2 BASIC8.51□□□□□ -1.05
CUX1P39880 PDE4D-228ENST00000636120 6659 ntTSL 5 BASIC8.51□□□□□ -1.05
CUX1P39880 RAB3B-201ENST00000371655 12844 ntAPPRIS P1 TSL 1 (best) BASIC8.5□□□□□ -1.05
CUX1P39880 PRKDC-202ENST00000338368 12784 ntAPPRIS ALT2 TSL 1 (best) BASIC8.5□□□□□ -1.05
CUX1P39880 PSG9-202ENST00000270077 1705 ntAPPRIS P2 TSL 1 (best) BASIC8.5□□□□□ -1.05
CUX1P39880 Y_RNA.126-201ENST00000363382 111 ntBASIC8.5□□□□□ -1.05
CUX1P39880 RPL12P43-201ENST00000420608 499 ntBASIC8.5□□□□□ -1.05
CUX1P39880 CCNB1IP1P2-201ENST00000432876 818 ntBASIC8.5□□□□□ -1.05
CUX1P39880 AC005154.2-201ENST00000438110 379 ntBASIC8.5□□□□□ -1.05
CUX1P39880 AP000402.1-201ENST00000446404 540 ntTSL 3 BASIC8.5□□□□□ -1.05
CUX1P39880 AC079760.2-201ENST00000449361 681 ntTSL 5 BASIC8.5□□□□□ -1.05
CUX1P39880 RPL23AP56-201ENST00000460778 453 ntBASIC8.5□□□□□ -1.05
CUX1P39880 RN7SL319P-201ENST00000480656 221 ntBASIC8.5□□□□□ -1.05
CUX1P39880 TMED11P-203ENST00000502630 533 ntTSL 5 BASIC8.5□□□□□ -1.05
CUX1P39880 AC068413.1-201ENST00000517739 776 ntTSL 5 BASIC8.5□□□□□ -1.05
CUX1P39880 AL133485.1-201ENST00000555966 392 ntTSL 2 BASIC8.5□□□□□ -1.05
CUX1P39880 MIR4284-201ENST00000578924 81 ntBASIC8.5□□□□□ -1.05
CUX1P39880 RPL26P30-202ENST00000602923 645 ntBASIC8.5□□□□□ -1.05
CUX1P39880 ATP6V1A-201ENST00000273398 4591 ntAPPRIS P1 TSL 1 (best) BASIC8.5□□□□□ -1.05
CUX1P39880 VPS50-202ENST00000305866 3613 ntAPPRIS P1 TSL 1 (best) BASIC8.5□□□□□ -1.05
CUX1P39880 CLCN3-211ENST00000613795 5874 ntTSL 5 BASIC8.5□□□□□ -1.05
CUX1P39880 PIK3CB-201ENST00000289153 5919 ntAPPRIS P1 TSL 1 (best) BASIC8.5□□□□□ -1.05
CUX1P39880 NAV2-AS5-201ENST00000528726 3307 ntTSL 1 (best) BASIC8.5□□□□□ -1.05
CUX1P39880 DAZ1-205ENST00000540248 3268 ntTSL 5 BASIC8.5□□□□□ -1.05
CUX1P39880 FOXP2-202ENST00000360232 1412 ntTSL 1 (best) BASIC8.5□□□□□ -1.05
CUX1P39880 PLEKHS1-204ENST00000369310 2046 ntAPPRIS ALT2 TSL 1 (best) BASIC8.5□□□□□ -1.05
CUX1P39880 DCTN5-201ENST00000300087 11011 ntAPPRIS P1 TSL 1 (best) BASIC8.5□□□□□ -1.05
CUX1P39880 TBC1D23-201ENST00000344949 3656 ntAPPRIS P1 TSL 1 (best) BASIC8.5□□□□□ -1.05
CUX1P39880 LYVE1-201ENST00000256178 3273 ntAPPRIS P1 TSL 1 (best) BASIC8.5□□□□□ -1.05
CUX1P39880 RN7SKP185-201ENST00000362813 326 ntBASIC8.49□□□□□ -1.05
CUX1P39880 SNORA2.3-201ENST00000383920 135 ntBASIC8.49□□□□□ -1.05
CUX1P39880 AL365271.1-201ENST00000448909 603 ntTSL 3 BASIC8.49□□□□□ -1.05
CUX1P39880 AC098976.1-201ENST00000513014 541 ntBASIC8.49□□□□□ -1.05
CUX1P39880 RN7SKP21-201ENST00000516503 220 ntBASIC8.49□□□□□ -1.05
CUX1P39880 AC079064.1-201ENST00000528365 362 ntBASIC8.49□□□□□ -1.05
CUX1P39880 FAM174B-202ENST00000553393 495 ntTSL 2 BASIC8.49□□□□□ -1.05
CUX1P39880 uc_338.7-201ENST00000621834 124 ntBASIC8.49□□□□□ -1.05
CUX1P39880 DCLK1-208ENST00000615680 7592 ntTSL 2 BASIC8.49□□□□□ -1.05
CUX1P39880 MTUS1-228ENST00000544260 3650 ntTSL 2 BASIC8.49□□□□□ -1.05
CUX1P39880 PRDM2-206ENST00000413440 6175 ntTSL 1 (best) BASIC8.49□□□□□ -1.05
CUX1P39880 TYW3-203ENST00000457880 3335 ntTSL 2 BASIC8.49□□□□□ -1.05
CUX1P39880 MDM4-204ENST00000367183 9098 ntTSL 1 (best) BASIC8.49□□□□□ -1.05
CUX1P39880 AF131216.1-201ENST00000498997 5856 ntTSL 1 (best) BASIC8.49□□□□□ -1.05
CUX1P39880 ZNF638-201ENST00000264447 6505 ntAPPRIS P1 TSL 1 (best) BASIC8.49□□□□□ -1.05
CUX1P39880 OR6C4-202ENST00000641569 5141 ntAPPRIS P1 BASIC8.49□□□□□ -1.05
CUX1P39880 LINC00463-201ENST00000413501 1147 ntTSL 3 BASIC8.49□□□□□ -1.05
CUX1P39880 AC004415.1-201ENST00000422697 449 ntTSL 3 BASIC8.49□□□□□ -1.05
CUX1P39880 IGKV1OR9-1-201ENST00000424370 284 ntBASIC8.49□□□□□ -1.05
CUX1P39880 AL590399.2-201ENST00000427536 309 ntBASIC8.49□□□□□ -1.05
CUX1P39880 RN7SL189P-201ENST00000468631 289 ntBASIC8.49□□□□□ -1.05
CUX1P39880 SOX5P1-201ENST00000524155 1127 ntBASIC8.49□□□□□ -1.05
CUX1P39880 AL133166.1-205ENST00000548306 569 ntTSL 4 BASIC8.49□□□□□ -1.05
CUX1P39880 LINC02327-203ENST00000550122 738 ntTSL 2 BASIC8.49□□□□□ -1.05
CUX1P39880 AP001357.1-201ENST00000586304 1053 ntBASIC8.49□□□□□ -1.05
CUX1P39880 AL445423.1-201ENST00000609941 536 ntBASIC8.49□□□□□ -1.05
CUX1P39880 AL138960.1-201ENST00000613838 513 ntBASIC8.49□□□□□ -1.05
CUX1P39880 AL034408.1-201ENST00000637712 664 ntBASIC8.49□□□□□ -1.05
CUX1P39880 FPGT-208ENST00000534056 1426 ntTSL 2 BASIC8.48□□□□□ -1.05
CUX1P39880 RAPGEF4-215ENST00000540783 3974 ntTSL 2 BASIC8.48□□□□□ -1.05
CUX1P39880 KARSP3-201ENST00000571212 1504 ntBASIC8.48□□□□□ -1.05
CUX1P39880 LINC00891-201ENST00000627173 4113 ntTSL 2 BASIC8.48□□□□□ -1.05
CUX1P39880 HYALP1-201ENST00000417674 1279 ntBASIC8.48□□□□□ -1.05
CUX1P39880 AL121885.1-201ENST00000417957 451 ntTSL 3 BASIC8.48□□□□□ -1.05
CUX1P39880 LINC01934-202ENST00000424170 686 ntTSL 4 BASIC8.48□□□□□ -1.05
CUX1P39880 IL23R-203ENST00000425614 1295 ntTSL 1 (best) BASIC8.48□□□□□ -1.05
CUX1P39880 C6orf52-203ENST00000426700 493 ntAPPRIS P2 TSL 2 BASIC8.48□□□□□ -1.05
CUX1P39880 OR2B7P-201ENST00000429302 934 ntBASIC8.48□□□□□ -1.05
CUX1P39880 AL033380.1-201ENST00000442781 421 ntTSL 2 BASIC8.48□□□□□ -1.05
CUX1P39880 AC000111.2-201ENST00000448200 210 ntBASIC8.48□□□□□ -1.05
CUX1P39880 CEACAMP6-201ENST00000452007 574 ntBASIC8.48□□□□□ -1.05
CUX1P39880 RPS17P2-201ENST00000461663 408 ntBASIC8.48□□□□□ -1.05
CUX1P39880 AC115622.1-201ENST00000509628 587 ntTSL 3 BASIC8.48□□□□□ -1.05
CUX1P39880 LINC02223-202ENST00000511596 578 ntTSL 5 BASIC8.48□□□□□ -1.05
CUX1P39880 AC012339.2-201ENST00000523996 453 ntBASIC8.48□□□□□ -1.05
Retrieved 100 of 98,524 protein–RNA pairs in 77.3 ms