Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 LINC00507-201ENST00000540882 1935 ntTSL 5 BASIC6.87□□□□□ -1.31
HOXC9P31274 RCOR3-201ENST00000367005 4246 ntTSL 1 (best) BASIC6.87□□□□□ -1.31
HOXC9P31274 DAZ4-205ENST00000440066 1891 ntTSL 5 BASIC6.87□□□□□ -1.31
HOXC9P31274 PHC3-203ENST00000467570 2595 ntTSL 2 BASIC6.87□□□□□ -1.31
HOXC9P31274 CLCA1-202ENST00000394711 3118 ntAPPRIS P1 TSL 1 (best) BASIC6.87□□□□□ -1.31
HOXC9P31274 LAMA2-201ENST00000421865 9640 ntAPPRIS P2 TSL 5 BASIC6.87□□□□□ -1.31
HOXC9P31274 ATF2-201ENST00000264110 4176 ntTSL 1 (best) BASIC6.87□□□□□ -1.31
HOXC9P31274 ZBTB44-210ENST00000530205 2179 ntTSL 1 (best) BASIC6.86□□□□□ -1.31
HOXC9P31274 IGSF6-201ENST00000268389 2785 ntAPPRIS P1 TSL 1 (best) BASIC6.86□□□□□ -1.31
HOXC9P31274 C3orf58-202ENST00000441925 3260 ntTSL 2 BASIC6.86□□□□□ -1.31
HOXC9P31274 SP110-202ENST00000258382 2080 ntTSL 1 (best) BASIC6.86□□□□□ -1.31
HOXC9P31274 LINC02352-202ENST00000559292 1450 ntTSL 5 BASIC6.86□□□□□ -1.31
HOXC9P31274 NOX4-214ENST00000532825 2039 ntTSL 2 BASIC6.86□□□□□ -1.31
HOXC9P31274 VPS41-203ENST00000395969 3181 ntTSL 5 BASIC6.86□□□□□ -1.31
HOXC9P31274 MCM9-209ENST00000619706 4822 ntAPPRIS P1 TSL 5 BASIC6.86□□□□□ -1.31
HOXC9P31274 KCNIP4-202ENST00000382148 2481 ntAPPRIS ALT1 TSL 1 (best) BASIC6.86□□□□□ -1.31
HOXC9P31274 AL583808.2-201ENST00000418078 1382 ntTSL 5 BASIC6.86□□□□□ -1.31
HOXC9P31274 VIT-206ENST00000457137 1344 ntTSL 1 (best) BASIC6.86□□□□□ -1.31
HOXC9P31274 OR9G4-201ENST00000302957 984 ntBASIC6.86□□□□□ -1.31
HOXC9P31274 ELSPBP1-201ENST00000339841 1052 ntAPPRIS P2 TSL 1 (best) BASIC6.86□□□□□ -1.31
HOXC9P31274 USMG5-203ENST00000369811 635 ntAPPRIS P1 TSL 2 BASIC6.86□□□□□ -1.31
HOXC9P31274 MIR141-201ENST00000384975 95 ntBASIC6.86□□□□□ -1.31
HOXC9P31274 TRAJ25-201ENST00000390512 60 ntAPPRIS P1 BASIC6.86□□□□□ -1.31
HOXC9P31274 AC013442.1-201ENST00000397347 228 ntBASIC6.86□□□□□ -1.31
HOXC9P31274 GAPDHP15-201ENST00000398586 975 ntBASIC6.86□□□□□ -1.31
HOXC9P31274 CYTOR-204ENST00000409898 560 ntTSL 5 BASIC6.86□□□□□ -1.31
HOXC9P31274 AC012368.2-201ENST00000423539 560 ntTSL 3 BASIC6.86□□□□□ -1.31
HOXC9P31274 OR6C71P-201ENST00000432580 913 ntBASIC6.86□□□□□ -1.31
HOXC9P31274 RPL7P11-201ENST00000437586 658 ntBASIC6.86□□□□□ -1.31
HOXC9P31274 AC112498.1-201ENST00000444401 332 ntBASIC6.86□□□□□ -1.31
HOXC9P31274 REG1CP-206ENST00000447469 496 ntBASIC6.86□□□□□ -1.31
HOXC9P31274 MIR4435-2HG-214ENST00000453478 560 ntTSL 4 BASIC6.86□□□□□ -1.31
HOXC9P31274 TRAPPC2-204ENST00000458511 678 ntTSL 5 BASIC6.86□□□□□ -1.31
HOXC9P31274 AC117513.1-201ENST00000462792 766 ntTSL 2 BASIC6.86□□□□□ -1.31
HOXC9P31274 RN7SL738P-201ENST00000470264 297 ntBASIC6.86□□□□□ -1.31
HOXC9P31274 ARHGEF3-AS1-201ENST00000477246 489 ntTSL 2 BASIC6.86□□□□□ -1.31
HOXC9P31274 RN7SL814P-201ENST00000487715 300 ntBASIC6.86□□□□□ -1.31
HOXC9P31274 NECTIN3-AS1-205ENST00000491709 792 ntTSL 3 BASIC6.86□□□□□ -1.31
HOXC9P31274 AC080013.1-206ENST00000496842 712 ntTSL 2 BASIC6.86□□□□□ -1.31
HOXC9P31274 AC083795.2-201ENST00000510034 610 ntTSL 3 BASIC6.86□□□□□ -1.31
HOXC9P31274 LINC02506-201ENST00000513211 734 ntTSL 3 BASIC6.86□□□□□ -1.31
HOXC9P31274 AC064807.2-201ENST00000521188 672 ntTSL 3 BASIC6.86□□□□□ -1.31
HOXC9P31274 SOX9-AS1-211ENST00000533179 460 ntTSL 3 BASIC6.86□□□□□ -1.31
HOXC9P31274 DISC1FP1-203ENST00000562678 796 ntTSL 3 BASIC6.86□□□□□ -1.31
HOXC9P31274 BGLT3-201ENST00000564523 994 ntBASIC6.86□□□□□ -1.31
HOXC9P31274 AJ003147.1-201ENST00000576762 454 ntTSL 3 BASIC6.86□□□□□ -1.31
HOXC9P31274 DIAPH2-AS1-204ENST00000579945 974 ntTSL 1 (best) BASIC6.86□□□□□ -1.31
HOXC9P31274 GMFG-202ENST00000594700 397 ntTSL 2 BASIC6.86□□□□□ -1.31
HOXC9P31274 AL133406.3-201ENST00000606817 541 ntBASIC6.86□□□□□ -1.31
HOXC9P31274 AL022394.1-201ENST00000606979 292 ntBASIC6.86□□□□□ -1.31
HOXC9P31274 MYO3B-202ENST00000408978 5529 ntAPPRIS P3 TSL 1 (best) BASIC6.85□□□□□ -1.31
HOXC9P31274 PCNX4-201ENST00000317623 17339 ntAPPRIS P3 TSL 5 BASIC6.85□□□□□ -1.31
HOXC9P31274 EDIL3-202ENST00000380138 4244 ntTSL 1 (best) BASIC6.85□□□□□ -1.31
HOXC9P31274 DYNC1I2-201ENST00000340296 2589 ntAPPRIS P4 TSL 1 (best) BASIC6.85□□□□□ -1.31
HOXC9P31274 GJA9-201ENST00000357771 1799 ntAPPRIS P1 TSL 1 (best) BASIC6.85□□□□□ -1.31
HOXC9P31274 ZNF26-202ENST00000534834 4853 ntAPPRIS ALT2 TSL 2 BASIC6.85□□□□□ -1.31
HOXC9P31274 IPO11-203ENST00000409534 1725 ntTSL 2 BASIC6.85□□□□□ -1.31
HOXC9P31274 GPATCH11-201ENST00000281932 3570 ntTSL 1 (best) BASIC6.85□□□□□ -1.31
HOXC9P31274 MELK-210ENST00000543751 2400 ntTSL 1 (best) BASIC6.85□□□□□ -1.31
HOXC9P31274 IL5-201ENST00000231454 816 ntAPPRIS P1 TSL 1 (best) BASIC6.85□□□□□ -1.31
HOXC9P31274 OR6X1-201ENST00000327930 1058 ntAPPRIS P1 BASIC6.85□□□□□ -1.31
HOXC9P31274 AC135895.1-201ENST00000360528 1058 ntTSL 5 BASIC6.85□□□□□ -1.31
HOXC9P31274 SNORA66-201ENST00000384792 133 ntBASIC6.85□□□□□ -1.31
HOXC9P31274 MIR192-201ENST00000384915 110 ntBASIC6.85□□□□□ -1.31
HOXC9P31274 TRAJ38-201ENST00000390499 62 ntAPPRIS P1 BASIC6.85□□□□□ -1.31
HOXC9P31274 AL359378.2-201ENST00000415575 746 ntTSL 2 BASIC6.85□□□□□ -1.31
HOXC9P31274 AC092920.1-201ENST00000428516 678 ntTSL 5 BASIC6.85□□□□□ -1.31
HOXC9P31274 AP000770.1-201ENST00000444123 583 ntTSL 5 BASIC6.85□□□□□ -1.31
HOXC9P31274 snoU13.29-201ENST00000459370 104 ntBASIC6.85□□□□□ -1.31
HOXC9P31274 RN7SL189P-201ENST00000468631 289 ntBASIC6.85□□□□□ -1.31
HOXC9P31274 AC006463.2-201ENST00000473326 348 ntBASIC6.85□□□□□ -1.31
HOXC9P31274 RN7SL244P-201ENST00000493405 297 ntBASIC6.85□□□□□ -1.31
HOXC9P31274 AC097173.1-201ENST00000505862 819 ntBASIC6.85□□□□□ -1.31
HOXC9P31274 AC022360.1-201ENST00000521058 340 ntBASIC6.85□□□□□ -1.31
HOXC9P31274 AL049875.1-201ENST00000554328 582 ntTSL 4 BASIC6.85□□□□□ -1.31
HOXC9P31274 RPL26-204ENST00000578812 1002 ntTSL 2 BASIC6.85□□□□□ -1.31
HOXC9P31274 LINC01355-202ENST00000604481 400 ntTSL 2 BASIC6.85□□□□□ -1.31
HOXC9P31274 AC079791.1-201ENST00000605356 973 ntBASIC6.85□□□□□ -1.31
HOXC9P31274 AL161912.3-201ENST00000605404 628 ntBASIC6.85□□□□□ -1.31
HOXC9P31274 Metazoa_SRP.55-201ENST00000618452 275 ntBASIC6.85□□□□□ -1.31
HOXC9P31274 SGO1-205ENST00000419233 1582 ntTSL 1 (best) BASIC6.85□□□□□ -1.31
HOXC9P31274 SV2B-202ENST00000394232 11279 ntAPPRIS P1 TSL 5 BASIC6.85□□□□□ -1.31
HOXC9P31274 POT1-AS1-205ENST00000453342 3252 ntTSL 1 (best) BASIC6.85□□□□□ -1.31
HOXC9P31274 RBM28-201ENST00000223073 15507 ntAPPRIS P1 TSL 1 (best) BASIC6.85□□□□□ -1.31
HOXC9P31274 NAT1-210ENST00000545197 1827 ntTSL 5 BASIC6.85□□□□□ -1.31
HOXC9P31274 TOX3-202ENST00000407228 3124 ntAPPRIS ALT2 TSL 2 BASIC6.85□□□□□ -1.31
HOXC9P31274 ZNF573-201ENST00000339503 2014 ntTSL 5 BASIC6.84□□□□□ -1.31
HOXC9P31274 ARHGAP20-206ENST00000533353 6066 ntAPPRIS ALT2 TSL 1 (best) BASIC6.84□□□□□ -1.31
HOXC9P31274 AC008505.1-201ENST00000637582 2025 ntTSL 5 BASIC6.84□□□□□ -1.31
HOXC9P31274 CCDC62-205ENST00000537566 3537 ntAPPRIS ALT2 TSL 2 BASIC6.84□□□□□ -1.31
HOXC9P31274 ENPP3-203ENST00000414305 3418 ntAPPRIS P1 TSL 1 (best) BASIC6.84□□□□□ -1.31
HOXC9P31274 LCLAT1-203ENST00000379509 4888 ntAPPRIS P1 TSL 1 (best) BASIC6.84□□□□□ -1.31
HOXC9P31274 NPSR1-AS1-202ENST00000419766 4821 ntTSL 1 (best) BASIC6.84□□□□□ -1.31
HOXC9P31274 OR2D2-201ENST00000299459 1110 ntAPPRIS P1 BASIC6.84□□□□□ -1.31
HOXC9P31274 C1orf185-201ENST00000371759 915 ntAPPRIS P2 TSL 2 BASIC6.84□□□□□ -1.31
HOXC9P31274 DEFB135-201ENST00000382208 234 ntAPPRIS P1 TSL 1 (best) BASIC6.84□□□□□ -1.31
HOXC9P31274 LY6G5C-210ENST00000383237 674 ntAPPRIS P2 TSL 1 (best) BASIC6.84□□□□□ -1.31
HOXC9P31274 AC087380.1-202ENST00000415970 1163 ntTSL 2 BASIC6.84□□□□□ -1.31
HOXC9P31274 PRPF38AP2-201ENST00000438179 851 ntBASIC6.84□□□□□ -1.31
HOXC9P31274 AC074327.1-202ENST00000443523 369 ntTSL 2 BASIC6.84□□□□□ -1.31
Retrieved 100 of 98,524 protein–RNA pairs in 225.5 ms