Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 AK4P4-201ENST00000419465 646 ntBASIC5.61□□□□□ -1.51
COL28A1Q2UY09 EIF4A1P7-201ENST00000421800 1220 ntBASIC5.61□□□□□ -1.51
COL28A1Q2UY09 AC019205.1-201ENST00000421830 730 ntBASIC5.61□□□□□ -1.51
COL28A1Q2UY09 AL357315.1-201ENST00000422930 254 ntTSL 5 BASIC5.61□□□□□ -1.51
COL28A1Q2UY09 TAB2-AS1-201ENST00000424421 730 ntTSL 5 BASIC5.61□□□□□ -1.51
COL28A1Q2UY09 DPYD-IT1-201ENST00000424982 401 ntTSL 3 BASIC5.61□□□□□ -1.51
COL28A1Q2UY09 AL590399.2-201ENST00000427536 309 ntBASIC5.61□□□□□ -1.51
COL28A1Q2UY09 AC073508.1-201ENST00000428866 656 ntBASIC5.61□□□□□ -1.51
COL28A1Q2UY09 AF127577.4-201ENST00000432230 5929 ntTSL 5 BASIC5.61□□□□□ -1.51
COL28A1Q2UY09 AC007563.3-201ENST00000433233 371 ntBASIC5.61□□□□□ -1.51
COL28A1Q2UY09 RPS11P7-201ENST00000442125 465 ntBASIC5.61□□□□□ -1.51
COL28A1Q2UY09 AP003774.4-201ENST00000447028 672 ntTSL 2 BASIC5.61□□□□□ -1.51
COL28A1Q2UY09 AL157884.3-201ENST00000448273 1184 ntBASIC5.61□□□□□ -1.51
COL28A1Q2UY09 MOB4-207ENST00000448447 1021 ntTSL 2 BASIC5.61□□□□□ -1.51
COL28A1Q2UY09 LINC01014-203ENST00000455307 548 ntTSL 2 BASIC5.61□□□□□ -1.51
COL28A1Q2UY09 AC105021.1-201ENST00000455347 590 ntTSL 3 BASIC5.61□□□□□ -1.51
COL28A1Q2UY09 EIF4A2P2-201ENST00000455776 1070 ntBASIC5.61□□□□□ -1.51
COL28A1Q2UY09 AC112187.1-201ENST00000455837 479 ntBASIC5.61□□□□□ -1.51
COL28A1Q2UY09 SPRR2F-201ENST00000468739 681 ntAPPRIS P1 TSL 3 BASIC5.61□□□□□ -1.51
COL28A1Q2UY09 AC100832.1-201ENST00000471945 383 ntBASIC5.61□□□□□ -1.51
COL28A1Q2UY09 RPL7P6-201ENST00000480903 738 ntBASIC5.61□□□□□ -1.51
COL28A1Q2UY09 AC015864.1-201ENST00000496512 544 ntBASIC5.61□□□□□ -1.51
COL28A1Q2UY09 MROH2B-203ENST00000506092 3745 ntTSL 2 BASIC5.61□□□□□ -1.51
COL28A1Q2UY09 AC091180.4-201ENST00000511322 245 ntTSL 2 BASIC5.61□□□□□ -1.51
COL28A1Q2UY09 AC034238.3-201ENST00000512349 591 ntTSL 4 BASIC5.61□□□□□ -1.51
COL28A1Q2UY09 SNHG27-203ENST00000514222 680 ntTSL 3 BASIC5.61□□□□□ -1.51
COL28A1Q2UY09 AC067904.2-201ENST00000517322 1283 ntBASIC5.61□□□□□ -1.51
COL28A1Q2UY09 AC040970.1-202ENST00000517908 505 ntTSL 3 BASIC5.61□□□□□ -1.51
COL28A1Q2UY09 GCSAML-206ENST00000527084 1308 ntAPPRIS ALT2 TSL 1 (best) BASIC5.61□□□□□ -1.51
COL28A1Q2UY09 OR6M2P-201ENST00000529831 871 ntBASIC5.61□□□□□ -1.51
COL28A1Q2UY09 AP004607.2-201ENST00000533949 322 ntBASIC5.61□□□□□ -1.51
COL28A1Q2UY09 KLRC1-204ENST00000536188 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC5.61□□□□□ -1.51
COL28A1Q2UY09 CERS3-203ENST00000538112 1856 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
COL28A1Q2UY09 IGBP1P1-201ENST00000554337 1009 ntBASIC5.61□□□□□ -1.51
COL28A1Q2UY09 RPL10P14-201ENST00000565265 298 ntBASIC5.61□□□□□ -1.51
COL28A1Q2UY09 MIR4646-201ENST00000580775 63 ntBASIC5.61□□□□□ -1.51
COL28A1Q2UY09 RNU4ATAC-201ENST00000580972 127 ntBASIC5.61□□□□□ -1.51
COL28A1Q2UY09 AC005324.5-201ENST00000584540 571 ntTSL 5 BASIC5.61□□□□□ -1.51
COL28A1Q2UY09 AC022098.3-201ENST00000590715 315 ntTSL 3 BASIC5.61□□□□□ -1.51
COL28A1Q2UY09 MIR7515HG-254ENST00000593269 943 ntTSL 5 BASIC5.61□□□□□ -1.51
COL28A1Q2UY09 AC016542.1-201ENST00000608259 493 ntBASIC5.61□□□□□ -1.51
COL28A1Q2UY09 AL021918.2-201ENST00000613415 194 ntBASIC5.61□□□□□ -1.51
COL28A1Q2UY09 AL139407.1-201ENST00000613826 1175 ntBASIC5.61□□□□□ -1.51
COL28A1Q2UY09 FCGR1B-209ENST00000616817 1584 ntAPPRIS ALT2 TSL 5 BASIC5.61□□□□□ -1.51
COL28A1Q2UY09 AL133370.2-201ENST00000619934 439 ntBASIC5.61□□□□□ -1.51
COL28A1Q2UY09 AC006249.1-201ENST00000621223 471 ntBASIC5.61□□□□□ -1.51
COL28A1Q2UY09 AP001002.1-201ENST00000625148 1513 ntBASIC5.61□□□□□ -1.51
COL28A1Q2UY09 SUPT3H-206ENST00000637763 498 ntTSL 3 BASIC5.61□□□□□ -1.51
COL28A1Q2UY09 PIGX-210ENST00000639143 831 ntAPPRIS ALT2 TSL 2 BASIC5.61□□□□□ -1.51
COL28A1Q2UY09 ZNF436-201ENST00000314011 4071 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
COL28A1Q2UY09 AC016745.2-201ENST00000608834 3443 ntBASIC5.61□□□□□ -1.51
COL28A1Q2UY09 CHMP1B2P-202ENST00000614414 6813 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
COL28A1Q2UY09 C15orf54-202ENST00000625107 3078 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
COL28A1Q2UY09 CFAP57-204ENST00000528956 3037 ntTSL 2 BASIC5.61□□□□□ -1.51
COL28A1Q2UY09 NBPF26-202ENST00000611287 2701 ntTSL 5 BASIC5.61□□□□□ -1.51
COL28A1Q2UY09 NBPF14-211ENST00000621070 2701 ntTSL 5 BASIC5.61□□□□□ -1.51
COL28A1Q2UY09 SLC35A5-201ENST00000261034 2444 ntTSL 5 BASIC5.6□□□□□ -1.51
COL28A1Q2UY09 MID1-209ENST00000453318 6393 ntAPPRIS P1 TSL 5 BASIC5.6□□□□□ -1.51
COL28A1Q2UY09 TMEM99-201ENST00000301665 2058 ntAPPRIS P2 TSL 2 BASIC5.6□□□□□ -1.51
COL28A1Q2UY09 PDE1A-204ENST00000410103 2000 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
COL28A1Q2UY09 ZNF177-202ENST00000589262 1920 ntAPPRIS ALT2 TSL 2 BASIC5.6□□□□□ -1.51
COL28A1Q2UY09 CHST9-203ENST00000618847 11388 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
COL28A1Q2UY09 POLR2B-213ENST00000639658 3300 ntTSL 5 BASIC5.6□□□□□ -1.51
COL28A1Q2UY09 MAMDC2-AS1-201ENST00000377178 1504 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
COL28A1Q2UY09 AC011503.2-201ENST00000594230 1500 ntBASIC5.6□□□□□ -1.51
COL28A1Q2UY09 AC017002.4-201ENST00000604721 1525 ntBASIC5.6□□□□□ -1.51
COL28A1Q2UY09 OR7A5-201ENST00000322301 4216 ntAPPRIS P1 BASIC5.6□□□□□ -1.51
COL28A1Q2UY09 LMOD3-201ENST00000420581 4086 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
COL28A1Q2UY09 ANK3-201ENST00000280772 16874 ntAPPRIS P3 TSL 1 (best) BASIC5.6□□□□□ -1.51
COL28A1Q2UY09 SPRR2E-202ENST00000368751 692 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
COL28A1Q2UY09 FAM66C-201ENST00000372173 678 ntTSL 5 BASIC5.6□□□□□ -1.51
COL28A1Q2UY09 AMELX-202ENST00000380712 835 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
COL28A1Q2UY09 AMELX-203ENST00000380714 793 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
COL28A1Q2UY09 TRAJ25-201ENST00000390512 60 ntAPPRIS P1 BASIC5.6□□□□□ -1.51
COL28A1Q2UY09 CXCL8-202ENST00000401931 700 ntAPPRIS ALT1 TSL 1 (best) BASIC5.6□□□□□ -1.51
COL28A1Q2UY09 SLC3A1-203ENST00000409294 792 ntTSL 2 BASIC5.6□□□□□ -1.51
COL28A1Q2UY09 AL096829.1-201ENST00000413677 457 ntBASIC5.6□□□□□ -1.51
COL28A1Q2UY09 AC068286.1-201ENST00000416173 467 ntTSL 4 BASIC5.6□□□□□ -1.51
COL28A1Q2UY09 GLUD1P9-201ENST00000420997 1173 ntBASIC5.6□□□□□ -1.51
COL28A1Q2UY09 MTND4P24-201ENST00000424002 397 ntBASIC5.6□□□□□ -1.51
COL28A1Q2UY09 AC092651.1-201ENST00000426110 312 ntBASIC5.6□□□□□ -1.51
COL28A1Q2UY09 VTI1BP4-201ENST00000427516 527 ntBASIC5.6□□□□□ -1.51
COL28A1Q2UY09 AL353693.1-201ENST00000429567 442 ntTSL 3 BASIC5.6□□□□□ -1.51
COL28A1Q2UY09 AC004990.1-201ENST00000431722 564 ntTSL 4 BASIC5.6□□□□□ -1.51
COL28A1Q2UY09 ZNF965P-201ENST00000432501 817 ntBASIC5.6□□□□□ -1.51
COL28A1Q2UY09 XKRY2-201ENST00000442362 1093 ntBASIC5.6□□□□□ -1.51
COL28A1Q2UY09 HCG14-201ENST00000444986 413 ntTSL 2 BASIC5.6□□□□□ -1.51
COL28A1Q2UY09 AL161629.1-201ENST00000446201 457 ntTSL 3 BASIC5.6□□□□□ -1.51
COL28A1Q2UY09 TPT1P13-201ENST00000449760 499 ntBASIC5.6□□□□□ -1.51
COL28A1Q2UY09 RPS23P6-201ENST00000466136 431 ntBASIC5.6□□□□□ -1.51
COL28A1Q2UY09 RN7SL817P-201ENST00000480777 288 ntBASIC5.6□□□□□ -1.51
COL28A1Q2UY09 AC069439.2-201ENST00000496403 789 ntTSL 2 BASIC5.6□□□□□ -1.51
COL28A1Q2UY09 AC072052.1-201ENST00000496556 306 ntBASIC5.6□□□□□ -1.51
COL28A1Q2UY09 PRELID3BP5-201ENST00000508612 460 ntBASIC5.6□□□□□ -1.51
COL28A1Q2UY09 GIN1-203ENST00000508629 1040 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
COL28A1Q2UY09 AC106864.1-201ENST00000510655 640 ntTSL 3 BASIC5.6□□□□□ -1.51
COL28A1Q2UY09 AC063979.2-201ENST00000513767 958 ntTSL 5 BASIC5.6□□□□□ -1.51
COL28A1Q2UY09 AC006518.1-201ENST00000541449 943 ntBASIC5.6□□□□□ -1.51
COL28A1Q2UY09 AC007569.1-202ENST00000547282 303 ntTSL 3 BASIC5.6□□□□□ -1.51
COL28A1Q2UY09 LINC01234-204ENST00000550905 589 ntTSL 3 BASIC5.6□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 74.3 ms