Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 AP002505.2-201ENST00000623585 696 ntBASIC5.37□□□□□ -1.55
LHX3Q9UBR4 AC072062.1-209ENST00000627336 772 ntTSL 5 BASIC5.37□□□□□ -1.55
LHX3Q9UBR4 LARS-201ENST00000274562 2213 ntTSL 2 BASIC5.37□□□□□ -1.55
LHX3Q9UBR4 NELL2-205ENST00000452445 3196 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
LHX3Q9UBR4 OR4K1-203ENST00000641429 1358 ntAPPRIS P1 BASIC5.37□□□□□ -1.55
LHX3Q9UBR4 VEZF1-204ENST00000584396 2342 ntAPPRIS ALT2 TSL 5 BASIC5.37□□□□□ -1.55
LHX3Q9UBR4 CR382285.2-201ENST00000624662 1495 ntBASIC5.37□□□□□ -1.55
LHX3Q9UBR4 SNX10-202ENST00000396376 2491 ntAPPRIS P2 TSL 1 (best) BASIC5.37□□□□□ -1.55
LHX3Q9UBR4 SESN1-201ENST00000302071 2718 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
LHX3Q9UBR4 MNS1-201ENST00000260453 2023 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
LHX3Q9UBR4 DGKB-201ENST00000399322 6684 ntAPPRIS P2 TSL 5 BASIC5.36□□□□□ -1.55
LHX3Q9UBR4 FGF1-215ENST00000619447 3818 ntAPPRIS P1 TSL 4 BASIC5.36□□□□□ -1.55
LHX3Q9UBR4 TRAPPC13-201ENST00000231526 2715 ntAPPRIS ALT1 TSL 5 BASIC5.36□□□□□ -1.55
LHX3Q9UBR4 ABCA10-201ENST00000269081 6362 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
LHX3Q9UBR4 IGSF10-201ENST00000282466 11067 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
LHX3Q9UBR4 CLDN12-203ENST00000394605 3488 ntAPPRIS P1 TSL 2 BASIC5.36□□□□□ -1.55
LHX3Q9UBR4 TAS2R8-201ENST00000240615 1243 ntAPPRIS P1 BASIC5.36□□□□□ -1.55
LHX3Q9UBR4 NUP37-201ENST00000251074 1203 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
LHX3Q9UBR4 U3.7-201ENST00000363668 216 ntBASIC5.36□□□□□ -1.55
LHX3Q9UBR4 RNU1-43P-201ENST00000365052 165 ntBASIC5.36□□□□□ -1.55
LHX3Q9UBR4 DUTP5-201ENST00000406790 469 ntBASIC5.36□□□□□ -1.55
LHX3Q9UBR4 Z68694.1-201ENST00000413929 841 ntBASIC5.36□□□□□ -1.55
LHX3Q9UBR4 MORF4L2-205ENST00000423833 717 ntTSL 5 BASIC5.36□□□□□ -1.55
LHX3Q9UBR4 NPM1P18-201ENST00000434232 732 ntBASIC5.36□□□□□ -1.55
LHX3Q9UBR4 LINC00969-211ENST00000438608 525 ntTSL 5 BASIC5.36□□□□□ -1.55
LHX3Q9UBR4 AC092941.2-201ENST00000444379 1008 ntTSL 3 BASIC5.36□□□□□ -1.55
LHX3Q9UBR4 NOP56P2-201ENST00000447491 769 ntBASIC5.36□□□□□ -1.55
LHX3Q9UBR4 AC079760.2-201ENST00000449361 681 ntTSL 5 BASIC5.36□□□□□ -1.55
LHX3Q9UBR4 AC002075.1-201ENST00000457396 676 ntBASIC5.36□□□□□ -1.55
LHX3Q9UBR4 MTCYBP14-201ENST00000457471 715 ntBASIC5.36□□□□□ -1.55
LHX3Q9UBR4 RN7SL799P-201ENST00000475891 298 ntBASIC5.36□□□□□ -1.55
LHX3Q9UBR4 AC079841.1-201ENST00000481228 950 ntBASIC5.36□□□□□ -1.55
LHX3Q9UBR4 AC008953.1-201ENST00000497334 318 ntBASIC5.36□□□□□ -1.55
LHX3Q9UBR4 MORF4L2P1-201ENST00000503761 858 ntBASIC5.36□□□□□ -1.55
LHX3Q9UBR4 HNRNPRP2-201ENST00000528421 743 ntBASIC5.36□□□□□ -1.55
LHX3Q9UBR4 AP003306.1-201ENST00000529875 353 ntTSL 2 BASIC5.36□□□□□ -1.55
LHX3Q9UBR4 AC144548.2-201ENST00000550231 946 ntTSL 3 BASIC5.36□□□□□ -1.55
LHX3Q9UBR4 C14orf2-211ENST00000557040 472 ntAPPRIS P1 TSL 3 BASIC5.36□□□□□ -1.55
LHX3Q9UBR4 UBL5-207ENST00000590068 390 ntAPPRIS P1 TSL 5 BASIC5.36□□□□□ -1.55
LHX3Q9UBR4 AC239809.3-206ENST00000596091 741 ntTSL 5 BASIC5.36□□□□□ -1.55
LHX3Q9UBR4 AC105402.3-203ENST00000608822 885 ntTSL 5 BASIC5.36□□□□□ -1.55
LHX3Q9UBR4 AL162574.1-201ENST00000615702 950 ntBASIC5.36□□□□□ -1.55
LHX3Q9UBR4 CDKN2B-AS_3.1-201ENST00000617587 144 ntBASIC5.36□□□□□ -1.55
LHX3Q9UBR4 CU634019.2-201ENST00000625184 593 ntTSL 3 BASIC5.36□□□□□ -1.55
LHX3Q9UBR4 AC079298.1-201ENST00000625026 1619 ntBASIC5.36□□□□□ -1.55
LHX3Q9UBR4 CD47-201ENST00000355354 5020 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
LHX3Q9UBR4 LINC01847-202ENST00000523311 1762 ntTSL 5 BASIC5.36□□□□□ -1.55
LHX3Q9UBR4 STAU2-210ENST00000521210 1950 ntTSL 2 BASIC5.36□□□□□ -1.55
LHX3Q9UBR4 TEX41-210ENST00000451774 2098 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
LHX3Q9UBR4 AC116158.1-201ENST00000560231 2129 ntBASIC5.36□□□□□ -1.55
LHX3Q9UBR4 NCOA7-208ENST00000438495 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC5.36□□□□□ -1.55
LHX3Q9UBR4 CPNE4-214ENST00000617767 3556 ntTSL 2 BASIC5.36□□□□□ -1.55
LHX3Q9UBR4 RAPGEF4-213ENST00000535187 3707 ntTSL 2 BASIC5.36□□□□□ -1.55
LHX3Q9UBR4 PEX26-201ENST00000329627 18445 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
LHX3Q9UBR4 ZNF492-201ENST00000456783 4245 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
LHX3Q9UBR4 AC008691.1-207ENST00000636819 4154 ntTSL 5 BASIC5.35□□□□□ -1.55
LHX3Q9UBR4 ERVW-1-201ENST00000493463 2925 ntAPPRIS P1 BASIC5.35□□□□□ -1.55
LHX3Q9UBR4 AL354696.2-201ENST00000619407 1910 ntTSL 2 BASIC5.35□□□□□ -1.55
LHX3Q9UBR4 AC092747.4-201ENST00000620519 1861 ntBASIC5.35□□□□□ -1.55
LHX3Q9UBR4 GJA9-201ENST00000357771 1799 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
LHX3Q9UBR4 PEX5L-202ENST00000392649 8540 ntAPPRIS ALT2 TSL 5 BASIC5.35□□□□□ -1.55
LHX3Q9UBR4 CLEC12A-203ENST00000355690 1428 ntAPPRIS ALT2 TSL 1 (best) BASIC5.35□□□□□ -1.55
LHX3Q9UBR4 OFD1P8Y-201ENST00000449148 1433 ntBASIC5.35□□□□□ -1.55
LHX3Q9UBR4 RYR3-208ENST00000622037 15564 ntAPPRIS ALT2 TSL 5 BASIC5.35□□□□□ -1.55
LHX3Q9UBR4 ZNF383-201ENST00000352998 6760 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
LHX3Q9UBR4 MAX-203ENST00000341653 330 ntTSL 2 BASIC5.35□□□□□ -1.55
LHX3Q9UBR4 U3.3-201ENST00000362986 216 ntBASIC5.35□□□□□ -1.55
LHX3Q9UBR4 FABP7-202ENST00000368444 1026 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
LHX3Q9UBR4 PAGE2B-202ENST00000374974 456 ntTSL 5 BASIC5.35□□□□□ -1.55
LHX3Q9UBR4 RNU11-201ENST00000387069 134 ntBASIC5.35□□□□□ -1.55
LHX3Q9UBR4 AC005522.1-201ENST00000395416 346 ntBASIC5.35□□□□□ -1.55
LHX3Q9UBR4 EI24P4-201ENST00000423683 1078 ntBASIC5.35□□□□□ -1.55
LHX3Q9UBR4 AL139148.1-201ENST00000427122 680 ntBASIC5.35□□□□□ -1.55
LHX3Q9UBR4 TMEM244-202ENST00000438392 565 ntAPPRIS P1 TSL 5 BASIC5.35□□□□□ -1.55
LHX3Q9UBR4 AC092637.1-201ENST00000444745 510 ntTSL 5 BASIC5.35□□□□□ -1.55
LHX3Q9UBR4 AC090804.1-201ENST00000448870 490 ntBASIC5.35□□□□□ -1.55
LHX3Q9UBR4 AURKAPS1-201ENST00000451805 1212 ntBASIC5.35□□□□□ -1.55
LHX3Q9UBR4 RPL7P40-201ENST00000481703 745 ntBASIC5.35□□□□□ -1.55
LHX3Q9UBR4 AC016687.1-201ENST00000482574 353 ntBASIC5.35□□□□□ -1.55
LHX3Q9UBR4 RPL15P21-201ENST00000495592 567 ntBASIC5.35□□□□□ -1.55
LHX3Q9UBR4 AC105420.1-201ENST00000504389 582 ntBASIC5.35□□□□□ -1.55
LHX3Q9UBR4 RPS4XP20-201ENST00000505751 772 ntBASIC5.35□□□□□ -1.55
LHX3Q9UBR4 MOCS2-205ENST00000508922 1210 ntTSL 5 BASIC5.35□□□□□ -1.55
LHX3Q9UBR4 AC008575.1-201ENST00000520401 694 ntAPPRIS P1 TSL 3 BASIC5.35□□□□□ -1.55
LHX3Q9UBR4 MAL2-208ENST00000523307 556 ntTSL 4 BASIC5.35□□□□□ -1.55
LHX3Q9UBR4 UQCRB-209ENST00000523920 695 ntTSL 5 BASIC5.35□□□□□ -1.55
LHX3Q9UBR4 OR4A46P-201ENST00000527255 933 ntBASIC5.35□□□□□ -1.55
LHX3Q9UBR4 AC002563.1-201ENST00000535109 451 ntTSL 3 BASIC5.35□□□□□ -1.55
LHX3Q9UBR4 MGAT4C-206ENST00000552435 550 ntTSL 4 BASIC5.35□□□□□ -1.55
LHX3Q9UBR4 AC004825.1-201ENST00000555068 586 ntBASIC5.35□□□□□ -1.55
LHX3Q9UBR4 AC023906.4-201ENST00000557898 895 ntTSL 3 BASIC5.35□□□□□ -1.55
LHX3Q9UBR4 AC090621.1-201ENST00000592121 419 ntTSL 3 BASIC5.35□□□□□ -1.55
LHX3Q9UBR4 AL360012.1-201ENST00000602813 131 ntBASIC5.35□□□□□ -1.55
LHX3Q9UBR4 AC008814.1-201ENST00000603797 406 ntBASIC5.35□□□□□ -1.55
LHX3Q9UBR4 AL162431.4-201ENST00000604674 411 ntBASIC5.35□□□□□ -1.55
LHX3Q9UBR4 DARS-AS1-220ENST00000607985 660 ntTSL 5 BASIC5.35□□□□□ -1.55
LHX3Q9UBR4 ETV1-208ENST00000420159 6231 ntTSL 2 BASIC5.35□□□□□ -1.55
LHX3Q9UBR4 RGS17-202ENST00000367225 7773 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
LHX3Q9UBR4 LCLAT1-203ENST00000379509 4888 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
LHX3Q9UBR4 N4BP2L2-IT2-201ENST00000629393 4890 ntBASIC5.35□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 103.7 ms