Protein–RNA interactions for Protein: Q9Y5X1

SNX9, Sorting nexin-9, humanhuman

Predictions only

Length 595 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNX9Q9Y5X1 AL929601.4-201ENST00000613011 1341 ntBASIC5.94□□□□□ -1.46
SNX9Q9Y5X1 LINC01963-201ENST00000562038 3148 ntBASIC5.94□□□□□ -1.46
SNX9Q9Y5X1 AC011503.2-201ENST00000594230 1500 ntBASIC5.94□□□□□ -1.46
SNX9Q9Y5X1 RFFL-202ENST00000394597 4227 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
SNX9Q9Y5X1 DPP8-210ENST00000559233 2953 ntAPPRIS P4 TSL 2 BASIC5.94□□□□□ -1.46
SNX9Q9Y5X1 DLGAP1-AS2-202ENST00000573177 1388 ntBASIC5.93□□□□□ -1.46
SNX9Q9Y5X1 IFRD1-217ENST00000621379 3232 ntTSL 2 BASIC5.93□□□□□ -1.46
SNX9Q9Y5X1 MAPRE2-202ENST00000413393 4173 ntAPPRIS ALT1 TSL 5 BASIC5.93□□□□□ -1.46
SNX9Q9Y5X1 AC068870.3-201ENST00000625077 2536 ntBASIC5.93□□□□□ -1.46
SNX9Q9Y5X1 EYA4-211ENST00000525849 3456 ntTSL 5 BASIC5.93□□□□□ -1.46
SNX9Q9Y5X1 FCRL5-202ENST00000368189 4424 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
SNX9Q9Y5X1 NAT1-208ENST00000520546 1446 ntAPPRIS P1 BASIC5.93□□□□□ -1.46
SNX9Q9Y5X1 ABI2-204ENST00000295851 22209 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
SNX9Q9Y5X1 FAS-203ENST00000355279 983 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
SNX9Q9Y5X1 BPHL-201ENST00000380368 797 ntTSL 5 BASIC5.93□□□□□ -1.46
SNX9Q9Y5X1 SNORA40.4-201ENST00000390971 128 ntBASIC5.93□□□□□ -1.46
SNX9Q9Y5X1 AL049812.3-201ENST00000412348 417 ntTSL 3 BASIC5.93□□□□□ -1.46
SNX9Q9Y5X1 RPSAP35-201ENST00000413753 818 ntBASIC5.93□□□□□ -1.46
SNX9Q9Y5X1 AC007161.1-204ENST00000423039 460 ntBASIC5.93□□□□□ -1.46
SNX9Q9Y5X1 AC008164.1-201ENST00000423925 564 ntTSL 4 BASIC5.93□□□□□ -1.46
SNX9Q9Y5X1 LBX1-AS1-202ENST00000434878 418 ntTSL 5 BASIC5.93□□□□□ -1.46
SNX9Q9Y5X1 KRTAP8-2P-201ENST00000440620 186 ntBASIC5.93□□□□□ -1.46
SNX9Q9Y5X1 AC092106.1-201ENST00000444291 373 ntBASIC5.93□□□□□ -1.46
SNX9Q9Y5X1 LINC01496-201ENST00000448761 460 ntTSL 5 BASIC5.93□□□□□ -1.46
SNX9Q9Y5X1 SIAH1P1-201ENST00000479411 923 ntBASIC5.93□□□□□ -1.46
SNX9Q9Y5X1 C21orf62-202ENST00000479548 964 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
SNX9Q9Y5X1 LINC02040-201ENST00000481004 556 ntTSL 5 BASIC5.93□□□□□ -1.46
SNX9Q9Y5X1 EIF1P7-201ENST00000487533 337 ntBASIC5.93□□□□□ -1.46
SNX9Q9Y5X1 AC108693.1-201ENST00000496068 432 ntBASIC5.93□□□□□ -1.46
SNX9Q9Y5X1 MORF4L2P1-201ENST00000503761 858 ntBASIC5.93□□□□□ -1.46
SNX9Q9Y5X1 AC093801.1-201ENST00000504017 307 ntTSL 2 BASIC5.93□□□□□ -1.46
SNX9Q9Y5X1 AC083923.2-201ENST00000519880 574 ntTSL 4 BASIC5.93□□□□□ -1.46
SNX9Q9Y5X1 NSMCE2-210ENST00000522563 1037 ntAPPRIS P1 TSL 5 BASIC5.93□□□□□ -1.46
SNX9Q9Y5X1 HDAC2-AS2-217ENST00000523087 493 ntTSL 3 BASIC5.93□□□□□ -1.46
SNX9Q9Y5X1 IGHVIII-76-1-201ENST00000523776 286 ntBASIC5.93□□□□□ -1.46
SNX9Q9Y5X1 LINC02366-202ENST00000541949 696 ntTSL 3 BASIC5.93□□□□□ -1.46
SNX9Q9Y5X1 AC007906.1-201ENST00000568648 510 ntTSL 5 BASIC5.93□□□□□ -1.46
SNX9Q9Y5X1 AC010547.7-201ENST00000570323 333 ntBASIC5.93□□□□□ -1.46
SNX9Q9Y5X1 AP001357.1-201ENST00000586304 1053 ntBASIC5.93□□□□□ -1.46
SNX9Q9Y5X1 AC109309.2-201ENST00000612597 332 ntBASIC5.93□□□□□ -1.46
SNX9Q9Y5X1 MTCO1P1-201ENST00000624263 1081 ntBASIC5.93□□□□□ -1.46
SNX9Q9Y5X1 AC063952.1-204ENST00000635496 927 ntTSL 5 BASIC5.93□□□□□ -1.46
SNX9Q9Y5X1 CD69-201ENST00000228434 1676 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
SNX9Q9Y5X1 DSC2-202ENST00000280904 12325 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
SNX9Q9Y5X1 LINC00240-204ENST00000607607 5607 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
SNX9Q9Y5X1 AC138907.8-201ENST00000623981 2256 ntBASIC5.93□□□□□ -1.46
SNX9Q9Y5X1 TRIM64B-201ENST00000329862 2689 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
SNX9Q9Y5X1 LIMA1-215ENST00000552823 3254 ntAPPRIS ALT2 TSL 2 BASIC5.93□□□□□ -1.46
SNX9Q9Y5X1 SYTL2-208ENST00000524452 2733 ntAPPRIS P3 TSL 2 BASIC5.93□□□□□ -1.46
SNX9Q9Y5X1 ELMO1-203ENST00000396045 2524 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
SNX9Q9Y5X1 MEPE-202ENST00000395102 2123 ntAPPRIS ALT2 TSL 5 BASIC5.93□□□□□ -1.46
SNX9Q9Y5X1 C12orf50-201ENST00000298699 1722 ntAPPRIS P1 TSL 2 BASIC5.93□□□□□ -1.46
SNX9Q9Y5X1 RIMS2-209ENST00000507740 8002 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
SNX9Q9Y5X1 PFKFB2-202ENST00000367080 7094 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
SNX9Q9Y5X1 FAM170B-AS1-203ENST00000442525 2000 ntTSL 2 BASIC5.92□□□□□ -1.46
SNX9Q9Y5X1 DOCK4-AS1-201ENST00000452714 2494 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
SNX9Q9Y5X1 SEMA6D-210ENST00000558816 4419 ntTSL 5 BASIC5.92□□□□□ -1.46
SNX9Q9Y5X1 C4orf17-201ENST00000326581 1636 ntAPPRIS P2 TSL 1 (best) BASIC5.92□□□□□ -1.46
SNX9Q9Y5X1 FIRRE-202ENST00000637577 1635 ntTSL 5 BASIC5.92□□□□□ -1.46
SNX9Q9Y5X1 CALN1-204ENST00000405452 8571 ntTSL 2 BASIC5.92□□□□□ -1.46
SNX9Q9Y5X1 ZBTB38-202ENST00000441582 3662 ntAPPRIS P1 TSL 2 BASIC5.92□□□□□ -1.46
SNX9Q9Y5X1 OR56A4-202ENST00000641156 3768 ntAPPRIS P1 BASIC5.92□□□□□ -1.46
SNX9Q9Y5X1 PSG9-202ENST00000270077 1705 ntAPPRIS P2 TSL 1 (best) BASIC5.92□□□□□ -1.46
SNX9Q9Y5X1 AL355488.2-201ENST00000609909 2850 ntBASIC5.92□□□□□ -1.46
SNX9Q9Y5X1 IL20-201ENST00000367096 925 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
SNX9Q9Y5X1 MYO3A-202ENST00000376301 727 ntTSL 5 BASIC5.92□□□□□ -1.46
SNX9Q9Y5X1 AL391361.1-201ENST00000405580 489 ntBASIC5.92□□□□□ -1.46
SNX9Q9Y5X1 AC099063.1-201ENST00000437128 324 ntTSL 5 BASIC5.92□□□□□ -1.46
SNX9Q9Y5X1 LINC02038-201ENST00000439074 702 ntTSL 4 BASIC5.92□□□□□ -1.46
SNX9Q9Y5X1 LINC01828-201ENST00000445514 531 ntTSL 4 BASIC5.92□□□□□ -1.46
SNX9Q9Y5X1 RAD1P2-201ENST00000446414 663 ntBASIC5.92□□□□□ -1.46
SNX9Q9Y5X1 RPS17P5-201ENST00000498293 408 ntBASIC5.92□□□□□ -1.46
SNX9Q9Y5X1 AC093535.1-203ENST00000512500 730 ntTSL 3 BASIC5.92□□□□□ -1.46
SNX9Q9Y5X1 AC063979.2-201ENST00000513767 958 ntTSL 5 BASIC5.92□□□□□ -1.46
SNX9Q9Y5X1 ZCCHC10-210ENST00000513848 876 ntAPPRIS ALT2 TSL 2 BASIC5.92□□□□□ -1.46
SNX9Q9Y5X1 RNU6-467P-201ENST00000517027 110 ntBASIC5.92□□□□□ -1.46
SNX9Q9Y5X1 KCTD9P6-201ENST00000522306 950 ntBASIC5.92□□□□□ -1.46
SNX9Q9Y5X1 OR5AM1P-201ENST00000532136 1032 ntBASIC5.92□□□□□ -1.46
SNX9Q9Y5X1 AC122688.1-201ENST00000541494 223 ntBASIC5.92□□□□□ -1.46
SNX9Q9Y5X1 AC079414.1-201ENST00000563114 488 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
SNX9Q9Y5X1 AC127540.1-201ENST00000580311 689 ntTSL 5 BASIC5.92□□□□□ -1.46
SNX9Q9Y5X1 AC005856.1-201ENST00000585921 286 ntTSL 3 BASIC5.92□□□□□ -1.46
SNX9Q9Y5X1 ZNF561-AS1-207ENST00000591932 676 ntTSL 5 BASIC5.92□□□□□ -1.46
SNX9Q9Y5X1 SUGT1P3-202ENST00000604259 383 ntBASIC5.92□□□□□ -1.46
SNX9Q9Y5X1 AL359513.1-201ENST00000614364 557 ntBASIC5.92□□□□□ -1.46
SNX9Q9Y5X1 MILR1-204ENST00000616498 747 ntAPPRIS ALT2 TSL 1 (best) BASIC5.92□□□□□ -1.46
SNX9Q9Y5X1 AC005840.5-201ENST00000619166 599 ntBASIC5.92□□□□□ -1.46
SNX9Q9Y5X1 PCDH11X-202ENST00000361655 4126 ntAPPRIS ALT2 TSL 1 (best) BASIC5.92□□□□□ -1.46
SNX9Q9Y5X1 GAPVD1-206ENST00000394104 6737 ntTSL 2 BASIC5.92□□□□□ -1.46
SNX9Q9Y5X1 SLC38A9-218ENST00000512595 1756 ntTSL 2 BASIC5.92□□□□□ -1.46
SNX9Q9Y5X1 CYP2C8-210ENST00000535898 1799 ntTSL 2 BASIC5.92□□□□□ -1.46
SNX9Q9Y5X1 RNF20-202ENST00000389120 3940 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
SNX9Q9Y5X1 ACSL5-202ENST00000354655 3351 ntAPPRIS P1 TSL 2 BASIC5.92□□□□□ -1.46
SNX9Q9Y5X1 PLEKHA1-203ENST00000368990 14010 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
SNX9Q9Y5X1 NDUFA5-207ENST00000471770 5608 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
SNX9Q9Y5X1 SDAD1-203ENST00000395711 2513 ntTSL 2 BASIC5.91□□□□□ -1.46
SNX9Q9Y5X1 RSF1-204ENST00000480887 5318 ntAPPRIS ALT2 TSL 1 (best) BASIC5.91□□□□□ -1.46
SNX9Q9Y5X1 IKZF2-201ENST00000342002 3747 ntAPPRIS ALT2 TSL 1 (best) BASIC5.91□□□□□ -1.46
SNX9Q9Y5X1 AASDH-202ENST00000451613 3182 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
SNX9Q9Y5X1 MAP3K7-203ENST00000369327 4558 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
Retrieved 100 of 98,524 protein–RNA pairs in 90 ms