Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 AC004448.4-204ENST00000585389 743 ntTSL 5 BASIC5.41□□□□□ -1.54
LHX3Q9UBR4 AC073254.1-207ENST00000600482 714 ntTSL 5 BASIC5.41□□□□□ -1.54
LHX3Q9UBR4 VN1R81P-201ENST00000602085 372 ntBASIC5.41□□□□□ -1.54
LHX3Q9UBR4 AC069307.1-201ENST00000602820 447 ntBASIC5.41□□□□□ -1.54
LHX3Q9UBR4 AC002128.2-201ENST00000604161 618 ntTSL 5 BASIC5.41□□□□□ -1.54
LHX3Q9UBR4 AC009027.1-201ENST00000604510 479 ntBASIC5.41□□□□□ -1.54
LHX3Q9UBR4 AL008635.1-201ENST00000609073 385 ntTSL 3 BASIC5.41□□□□□ -1.54
LHX3Q9UBR4 Metazoa_SRP.179-201ENST00000619020 241 ntBASIC5.41□□□□□ -1.54
LHX3Q9UBR4 AC079298.3-201ENST00000624941 977 ntTSL 3 BASIC5.41□□□□□ -1.54
LHX3Q9UBR4 MYOCOS-202ENST00000636788 1039 ntAPPRIS ALT2 TSL 5 BASIC5.41□□□□□ -1.54
LHX3Q9UBR4 DAOA-212ENST00000640578 378 ntAPPRIS ALT2 TSL 5 BASIC5.41□□□□□ -1.54
LHX3Q9UBR4 RUVBL2-214ENST00000640699 153 ntTSL 5 BASIC5.41□□□□□ -1.54
LHX3Q9UBR4 OR52B5P-202ENST00000641118 1110 ntBASIC5.41□□□□□ -1.54
LHX3Q9UBR4 BPIFC-201ENST00000300399 1980 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
LHX3Q9UBR4 ACE2-201ENST00000252519 3393 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
LHX3Q9UBR4 FRMD6-205ENST00000554167 4176 ntTSL 2 BASIC5.41□□□□□ -1.54
LHX3Q9UBR4 LINC00343-202ENST00000415294 1320 ntTSL 5 BASIC5.41□□□□□ -1.54
LHX3Q9UBR4 AL360270.2-201ENST00000562952 5985 ntBASIC5.41□□□□□ -1.54
LHX3Q9UBR4 LINC02261-201ENST00000512873 2802 ntTSL 2 BASIC5.41□□□□□ -1.54
LHX3Q9UBR4 ATF2-201ENST00000264110 4176 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
LHX3Q9UBR4 RARSP1-201ENST00000542842 1418 ntBASIC5.4□□□□□ -1.54
LHX3Q9UBR4 TRPC4-207ENST00000426868 2709 ntTSL 2 BASIC5.4□□□□□ -1.54
LHX3Q9UBR4 AL136985.3-202ENST00000636386 2708 ntTSL 5 BASIC5.4□□□□□ -1.54
LHX3Q9UBR4 NPSR1-AS1-202ENST00000419766 4821 ntTSL 1 (best) BASIC5.4□□□□□ -1.54
LHX3Q9UBR4 MCM9-209ENST00000619706 4822 ntAPPRIS P1 TSL 5 BASIC5.4□□□□□ -1.54
LHX3Q9UBR4 CLEC12A-205ENST00000434319 1515 ntTSL 1 (best) BASIC5.4□□□□□ -1.54
LHX3Q9UBR4 ZC2HC1B-201ENST00000237275 1002 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.54
LHX3Q9UBR4 OR2B6-201ENST00000244623 942 ntAPPRIS P1 BASIC5.4□□□□□ -1.54
LHX3Q9UBR4 OR7G2-201ENST00000305456 1038 ntAPPRIS P2 BASIC5.4□□□□□ -1.54
LHX3Q9UBR4 OR5H1-201ENST00000354565 942 ntAPPRIS P1 BASIC5.4□□□□□ -1.54
LHX3Q9UBR4 SPATA42-201ENST00000369989 535 ntTSL 1 (best) BASIC5.4□□□□□ -1.54
LHX3Q9UBR4 SNORA67-201ENST00000384423 137 ntBASIC5.4□□□□□ -1.54
LHX3Q9UBR4 TRGV5-201ENST00000390344 552 ntAPPRIS P1 BASIC5.4□□□□□ -1.54
LHX3Q9UBR4 LINC01829-201ENST00000414404 571 ntTSL 2 BASIC5.4□□□□□ -1.54
LHX3Q9UBR4 MARK2P12-201ENST00000420129 585 ntBASIC5.4□□□□□ -1.54
LHX3Q9UBR4 AL603840.1-203ENST00000424357 645 ntTSL 3 BASIC5.4□□□□□ -1.54
LHX3Q9UBR4 NANOGP4-201ENST00000427230 913 ntBASIC5.4□□□□□ -1.54
LHX3Q9UBR4 AL161457.1-201ENST00000434656 905 ntTSL 5 BASIC5.4□□□□□ -1.54
LHX3Q9UBR4 TTC26-205ENST00000474035 1193 ntTSL 1 (best) BASIC5.4□□□□□ -1.54
LHX3Q9UBR4 DEFB109A-201ENST00000482450 265 ntBASIC5.4□□□□□ -1.54
LHX3Q9UBR4 RPS21P4-201ENST00000487122 248 ntBASIC5.4□□□□□ -1.54
LHX3Q9UBR4 EIF4E-204ENST00000504432 1132 ntTSL 5 BASIC5.4□□□□□ -1.54
LHX3Q9UBR4 AC091917.2-201ENST00000505002 744 ntBASIC5.4□□□□□ -1.54
LHX3Q9UBR4 AC091860.2-201ENST00000509423 941 ntTSL 2 BASIC5.4□□□□□ -1.54
LHX3Q9UBR4 AC126768.1-201ENST00000511698 490 ntTSL 3 BASIC5.4□□□□□ -1.54
LHX3Q9UBR4 AP003696.1-201ENST00000519337 770 ntTSL 3 BASIC5.4□□□□□ -1.54
LHX3Q9UBR4 AP001528.2-201ENST00000528660 1156 ntTSL 5 BASIC5.4□□□□□ -1.54
LHX3Q9UBR4 AC007406.1-201ENST00000544067 315 ntTSL 3 BASIC5.4□□□□□ -1.54
LHX3Q9UBR4 AC012409.1-202ENST00000558449 639 ntTSL 2 BASIC5.4□□□□□ -1.54
LHX3Q9UBR4 MIR762HG-201ENST00000564901 648 ntTSL 2 BASIC5.4□□□□□ -1.54
LHX3Q9UBR4 WWOX-217ENST00000620008 450 ntTSL 2 BASIC5.4□□□□□ -1.54
LHX3Q9UBR4 MTCO1P1-201ENST00000624263 1081 ntBASIC5.4□□□□□ -1.54
LHX3Q9UBR4 ATP1B4-201ENST00000218008 3868 ntAPPRIS ALT1 TSL 1 (best) BASIC5.4□□□□□ -1.55
LHX3Q9UBR4 NRCAM-210ENST00000425651 3915 ntAPPRIS ALT2 TSL 1 (best) BASIC5.4□□□□□ -1.55
LHX3Q9UBR4 ERVH48-1-201ENST00000447535 2790 ntTSL 1 (best) BASIC5.4□□□□□ -1.55
LHX3Q9UBR4 AL034549.2-201ENST00000618285 3373 ntBASIC5.4□□□□□ -1.55
LHX3Q9UBR4 STMN2-201ENST00000220876 2223 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.55
LHX3Q9UBR4 SV2B-201ENST00000330276 11202 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.55
LHX3Q9UBR4 SLC26A3-201ENST00000340010 2863 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.55
LHX3Q9UBR4 NXPE4-202ENST00000424261 1687 ntTSL 1 (best) BASIC5.4□□□□□ -1.55
LHX3Q9UBR4 MKI67-201ENST00000368653 11417 ntAPPRIS ALT2 TSL 2 BASIC5.4□□□□□ -1.55
LHX3Q9UBR4 ZNF518B-201ENST00000326756 6894 ntAPPRIS P1 TSL 3 BASIC5.4□□□□□ -1.55
LHX3Q9UBR4 EEF1A1P14-201ENST00000421195 1376 ntBASIC5.4□□□□□ -1.55
LHX3Q9UBR4 MTCO1P22-201ENST00000604619 1360 ntBASIC5.4□□□□□ -1.55
LHX3Q9UBR4 KIAA0408-204ENST00000483725 3284 ntAPPRIS P2 TSL 5 BASIC5.4□□□□□ -1.55
LHX3Q9UBR4 CYP3A7-CYP3A51P-202ENST00000620220 1704 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.55
LHX3Q9UBR4 ARIH1-201ENST00000379887 21681 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.55
LHX3Q9UBR4 DHX32-201ENST00000284690 3070 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
LHX3Q9UBR4 BCLAF1-201ENST00000353331 7110 ntTSL 5 BASIC5.39□□□□□ -1.55
LHX3Q9UBR4 DOPEY1-201ENST00000237163 7995 ntAPPRIS ALT1 TSL 5 BASIC5.39□□□□□ -1.55
LHX3Q9UBR4 OR2AT4-202ENST00000641504 8661 ntAPPRIS P1 BASIC5.39□□□□□ -1.55
LHX3Q9UBR4 ALKBH3-AS1-201ENST00000499194 1906 ntTSL 2 BASIC5.39□□□□□ -1.55
LHX3Q9UBR4 TTC6-202ENST00000382320 1972 ntTSL 2 BASIC5.39□□□□□ -1.55
LHX3Q9UBR4 AC087258.1-203ENST00000545400 1629 ntTSL 2 BASIC5.39□□□□□ -1.55
LHX3Q9UBR4 CCDC169-202ENST00000239860 716 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
LHX3Q9UBR4 OR9K1P-201ENST00000326513 941 ntBASIC5.39□□□□□ -1.55
LHX3Q9UBR4 MIR105-1-201ENST00000385222 81 ntBASIC5.39□□□□□ -1.55
LHX3Q9UBR4 MIR1178-201ENST00000408396 91 ntBASIC5.39□□□□□ -1.55
LHX3Q9UBR4 NT5C3A-206ENST00000409787 840 ntTSL 2 BASIC5.39□□□□□ -1.55
LHX3Q9UBR4 AP000534.2-201ENST00000412729 568 ntBASIC5.39□□□□□ -1.55
LHX3Q9UBR4 MTND2P40-201ENST00000436718 841 ntBASIC5.39□□□□□ -1.55
LHX3Q9UBR4 CNOT7P2-201ENST00000441051 832 ntBASIC5.39□□□□□ -1.55
LHX3Q9UBR4 AP000472.1-201ENST00000452500 530 ntTSL 2 BASIC5.39□□□□□ -1.55
LHX3Q9UBR4 LINC02502-201ENST00000505122 642 ntTSL 4 BASIC5.39□□□□□ -1.55
LHX3Q9UBR4 RNA5SP34-201ENST00000516887 130 ntBASIC5.39□□□□□ -1.55
LHX3Q9UBR4 AZIN1-AS1-203ENST00000517996 756 ntTSL 3 BASIC5.39□□□□□ -1.55
LHX3Q9UBR4 LINC00589-202ENST00000518623 938 ntTSL 4 BASIC5.39□□□□□ -1.55
LHX3Q9UBR4 AC025857.1-201ENST00000525252 377 ntBASIC5.39□□□□□ -1.55
LHX3Q9UBR4 AP002370.2-202ENST00000533669 908 ntTSL 5 BASIC5.39□□□□□ -1.55
LHX3Q9UBR4 AC109460.2-201ENST00000569974 544 ntTSL 3 BASIC5.39□□□□□ -1.55
LHX3Q9UBR4 AP001381.1-201ENST00000584109 534 ntTSL 5 BASIC5.39□□□□□ -1.55
LHX3Q9UBR4 MIR7853-201ENST00000584820 132 ntBASIC5.39□□□□□ -1.55
LHX3Q9UBR4 AC005702.2-201ENST00000591035 481 ntAPPRIS P1 TSL 3 BASIC5.39□□□□□ -1.55
LHX3Q9UBR4 AL353770.4-201ENST00000614936 468 ntTSL 5 BASIC5.39□□□□□ -1.55
LHX3Q9UBR4 AL590491.2-203ENST00000614969 468 ntTSL 4 BASIC5.39□□□□□ -1.55
LHX3Q9UBR4 AC090527.3-201ENST00000619041 548 ntBASIC5.39□□□□□ -1.55
LHX3Q9UBR4 AC074101.1-201ENST00000637861 241 ntBASIC5.39□□□□□ -1.55
LHX3Q9UBR4 ZNF534-202ENST00000332323 2086 ntAPPRIS P4 TSL 1 (best) BASIC5.39□□□□□ -1.55
LHX3Q9UBR4 PHC3-217ENST00000497658 2087 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
LHX3Q9UBR4 PHF7-211ENST00000615126 1328 ntTSL 5 BASIC5.39□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 73.4 ms