Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 THEMIS-206ENST00000630369 2786 ntAPPRIS ALT2 TSL 1 (best) BASIC6.98□□□□□ -1.29
HOXC9P31274 MECOM-209ENST00000472280 3593 ntTSL 5 BASIC6.98□□□□□ -1.29
HOXC9P31274 ZNF224-201ENST00000336976 3980 ntAPPRIS P1 TSL 1 (best) BASIC6.98□□□□□ -1.29
HOXC9P31274 ELOVL6-202ENST00000394607 6454 ntAPPRIS P1 TSL 1 (best) BASIC6.98□□□□□ -1.29
HOXC9P31274 RABGEF1-202ENST00000380828 3864 ntTSL 2 BASIC6.98□□□□□ -1.29
HOXC9P31274 TCF4-284ENST00000637169 7553 ntTSL 5 BASIC6.98□□□□□ -1.29
HOXC9P31274 EPS15P1-202ENST00000459691 2071 ntBASIC6.98□□□□□ -1.29
HOXC9P31274 HIST1H2BD-201ENST00000289316 789 ntAPPRIS P1 TSL 1 (best) BASIC6.98□□□□□ -1.29
HOXC9P31274 C1orf162-201ENST00000343534 1107 ntAPPRIS P3 TSL 1 (best) BASIC6.98□□□□□ -1.29
HOXC9P31274 AL353625.1-202ENST00000366273 571 ntBASIC6.98□□□□□ -1.29
HOXC9P31274 C1orf54-202ENST00000369099 600 ntAPPRIS P1 TSL 1 (best) BASIC6.98□□□□□ -1.29
HOXC9P31274 SNORA70.9-201ENST00000384370 135 ntBASIC6.98□□□□□ -1.29
HOXC9P31274 RRM2B-203ENST00000395912 900 ntTSL 1 (best) BASIC6.98□□□□□ -1.29
HOXC9P31274 COX6B1P1-201ENST00000415962 213 ntBASIC6.98□□□□□ -1.29
HOXC9P31274 MGAT2P2-201ENST00000427194 797 ntBASIC6.98□□□□□ -1.29
HOXC9P31274 AL592431.1-201ENST00000451090 317 ntTSL 3 BASIC6.98□□□□□ -1.29
HOXC9P31274 AC104126.1-201ENST00000504004 711 ntTSL 3 BASIC6.98□□□□□ -1.29
HOXC9P31274 AC103853.1-201ENST00000520588 649 ntTSL 5 BASIC6.98□□□□□ -1.29
HOXC9P31274 CR383656.6-201ENST00000550518 394 ntBASIC6.98□□□□□ -1.29
HOXC9P31274 AC092364.1-202ENST00000593824 565 ntTSL 4 BASIC6.98□□□□□ -1.29
HOXC9P31274 DARS-AS1-211ENST00000595061 720 ntTSL 5 BASIC6.98□□□□□ -1.29
HOXC9P31274 AP001267.4-201ENST00000602598 545 ntBASIC6.98□□□□□ -1.29
HOXC9P31274 AL162431.4-201ENST00000604674 411 ntBASIC6.98□□□□□ -1.29
HOXC9P31274 AC002384.2-201ENST00000636036 790 ntTSL 3 BASIC6.98□□□□□ -1.29
HOXC9P31274 AP000550.3-201ENST00000637734 379 ntBASIC6.98□□□□□ -1.29
HOXC9P31274 OR7C1-204ENST00000642000 11290 ntAPPRIS P1 BASIC6.98□□□□□ -1.29
HOXC9P31274 LMO3-225ENST00000541295 3498 ntTSL 2 BASIC6.98□□□□□ -1.29
HOXC9P31274 ZNF525-201ENST00000467003 6107 ntTSL 4 BASIC6.98□□□□□ -1.29
HOXC9P31274 STK3-216ENST00000523601 3107 ntTSL 2 BASIC6.98□□□□□ -1.29
HOXC9P31274 IRF5P1-201ENST00000504852 2164 ntBASIC6.98□□□□□ -1.29
HOXC9P31274 OSER1-202ENST00000372970 1616 ntAPPRIS P1 TSL 3 BASIC6.98□□□□□ -1.29
HOXC9P31274 XIAP-205ENST00000434753 8415 ntAPPRIS P1 TSL 1 (best) BASIC6.98□□□□□ -1.29
HOXC9P31274 OR2AT4-204ENST00000641593 8733 ntAPPRIS P1 BASIC6.97□□□□□ -1.29
HOXC9P31274 NSD3-206ENST00000527502 4471 ntTSL 1 (best) BASIC6.97□□□□□ -1.29
HOXC9P31274 AXDND1-201ENST00000367618 3642 ntAPPRIS P2 TSL 1 (best) BASIC6.97□□□□□ -1.29
HOXC9P31274 YTHDC1-207ENST00000579690 2983 ntAPPRIS ALT2 TSL 5 BASIC6.97□□□□□ -1.29
HOXC9P31274 SEMA3A-201ENST00000265362 8225 ntAPPRIS P1 TSL 1 (best) BASIC6.97□□□□□ -1.29
HOXC9P31274 NDUFA4-201ENST00000339600 2130 ntAPPRIS P1 TSL 1 (best) BASIC6.97□□□□□ -1.29
HOXC9P31274 LRRK2-201ENST00000298910 9158 ntAPPRIS P1 TSL 1 (best) BASIC6.97□□□□□ -1.29
HOXC9P31274 LMNTD1-201ENST00000282881 1718 ntAPPRIS P3 TSL 2 BASIC6.97□□□□□ -1.29
HOXC9P31274 CFAP126-201ENST00000367974 774 ntAPPRIS P1 TSL 2 BASIC6.97□□□□□ -1.29
HOXC9P31274 PLIN2-202ENST00000380464 655 ntTSL 2 BASIC6.97□□□□□ -1.29
HOXC9P31274 DEFB136-201ENST00000382209 237 ntAPPRIS P1 TSL 1 (best) BASIC6.97□□□□□ -1.29
HOXC9P31274 U3.28-201ENST00000391249 210 ntBASIC6.97□□□□□ -1.29
HOXC9P31274 MTERF4-204ENST00000406593 802 ntTSL 2 BASIC6.97□□□□□ -1.29
HOXC9P31274 AL807761.1-201ENST00000417622 171 ntBASIC6.97□□□□□ -1.29
HOXC9P31274 NDUFB4P8-201ENST00000435351 367 ntBASIC6.97□□□□□ -1.29
HOXC9P31274 DPY19L2P2-203ENST00000435536 1858 ntBASIC6.97□□□□□ -1.29
HOXC9P31274 AL354794.1-201ENST00000442103 516 ntTSL 3 BASIC6.97□□□□□ -1.29
HOXC9P31274 AC073648.4-201ENST00000442655 781 ntBASIC6.97□□□□□ -1.29
HOXC9P31274 CBX1P2-201ENST00000453841 458 ntBASIC6.97□□□□□ -1.29
HOXC9P31274 AC138965.1-202ENST00000502354 547 ntTSL 5 BASIC6.97□□□□□ -1.29
HOXC9P31274 LINC02374-201ENST00000503637 743 ntTSL 3 BASIC6.97□□□□□ -1.29
HOXC9P31274 AC140125.3-201ENST00000505248 547 ntTSL 4 BASIC6.97□□□□□ -1.29
HOXC9P31274 AC108043.1-201ENST00000512696 574 ntBASIC6.97□□□□□ -1.29
HOXC9P31274 AC068672.2-201ENST00000524022 336 ntTSL 3 BASIC6.97□□□□□ -1.29
HOXC9P31274 OR4A17P-201ENST00000526032 904 ntBASIC6.97□□□□□ -1.29
HOXC9P31274 TDO2-208ENST00000536354 1701 ntAPPRIS P1 TSL 1 (best) BASIC6.97□□□□□ -1.29
HOXC9P31274 NKAIN2-204ENST00000545433 3052 ntTSL 5 BASIC6.97□□□□□ -1.29
HOXC9P31274 AL121989.1-201ENST00000585888 746 ntTSL 3 BASIC6.97□□□□□ -1.29
HOXC9P31274 AL139041.1-201ENST00000605480 610 ntBASIC6.97□□□□□ -1.29
HOXC9P31274 AL139124.1-201ENST00000609123 421 ntBASIC6.97□□□□□ -1.29
HOXC9P31274 THRA1/BTR-204ENST00000621191 513 ntTSL 5 BASIC6.97□□□□□ -1.29
HOXC9P31274 AC109462.4-201ENST00000637882 581 ntTSL 5 BASIC6.97□□□□□ -1.29
HOXC9P31274 NRCAM-210ENST00000425651 3915 ntAPPRIS ALT2 TSL 1 (best) BASIC6.97□□□□□ -1.29
HOXC9P31274 CRB1-203ENST00000367400 4932 ntAPPRIS P1 TSL 1 (best) BASIC6.97□□□□□ -1.29
HOXC9P31274 IL1RAPL1-202ENST00000378993 3667 ntAPPRIS P1 TSL 1 (best) BASIC6.97□□□□□ -1.29
HOXC9P31274 RPE65-201ENST00000262340 2610 ntAPPRIS P1 TSL 1 (best) BASIC6.97□□□□□ -1.29
HOXC9P31274 AC007996.1-201ENST00000620414 2821 ntBASIC6.96□□□□□ -1.29
HOXC9P31274 MROH9-201ENST00000367758 2227 ntAPPRIS P3 TSL 1 (best) BASIC6.96□□□□□ -1.29
HOXC9P31274 FOCAD-201ENST00000338382 5765 ntAPPRIS P1 TSL 5 BASIC6.96□□□□□ -1.3
HOXC9P31274 SYT14P1-202ENST00000600441 1448 ntBASIC6.96□□□□□ -1.3
HOXC9P31274 LIMA1-215ENST00000552823 3254 ntAPPRIS ALT2 TSL 2 BASIC6.96□□□□□ -1.3
HOXC9P31274 AL451142.1-201ENST00000375867 775 ntBASIC6.96□□□□□ -1.3
HOXC9P31274 RN7SKP114-201ENST00000410327 279 ntBASIC6.96□□□□□ -1.3
HOXC9P31274 AC073062.1-201ENST00000434509 455 ntTSL 5 BASIC6.96□□□□□ -1.3
HOXC9P31274 RPS29P10-201ENST00000439197 166 ntBASIC6.96□□□□□ -1.3
HOXC9P31274 RPS29P33-201ENST00000456717 146 ntBASIC6.96□□□□□ -1.3
HOXC9P31274 AC092957.1-201ENST00000473299 570 ntTSL 4 BASIC6.96□□□□□ -1.3
HOXC9P31274 LINC02039-201ENST00000507428 566 ntTSL 4 BASIC6.96□□□□□ -1.3
HOXC9P31274 OR51A1P-201ENST00000511110 946 ntBASIC6.96□□□□□ -1.3
HOXC9P31274 AC106894.1-201ENST00000511735 451 ntTSL 5 BASIC6.96□□□□□ -1.3
HOXC9P31274 AC004052.1-201ENST00000514327 567 ntTSL 4 BASIC6.96□□□□□ -1.3
HOXC9P31274 AC026719.2-201ENST00000515656 295 ntTSL 3 BASIC6.96□□□□□ -1.3
HOXC9P31274 AL671862.1-201ENST00000515851 349 ntBASIC6.96□□□□□ -1.3
HOXC9P31274 AC025437.5-201ENST00000522769 314 ntTSL 3 BASIC6.96□□□□□ -1.3
HOXC9P31274 AC079064.1-201ENST00000528365 362 ntBASIC6.96□□□□□ -1.3
HOXC9P31274 LINC01859-201ENST00000565584 1024 ntTSL 1 (best) BASIC6.96□□□□□ -1.3
HOXC9P31274 AC090617.5-201ENST00000571815 528 ntTSL 3 BASIC6.96□□□□□ -1.3
HOXC9P31274 AC011487.3-201ENST00000593607 453 ntBASIC6.96□□□□□ -1.3
HOXC9P31274 MIR4527HG-203ENST00000600127 704 ntTSL 5 BASIC6.96□□□□□ -1.3
HOXC9P31274 AC138035.1-202ENST00000604669 683 ntTSL 1 (best) BASIC6.96□□□□□ -1.3
HOXC9P31274 uc_338.7-201ENST00000621834 124 ntBASIC6.96□□□□□ -1.3
HOXC9P31274 OSER1-AS1-205ENST00000623343 827 ntTSL 5 BASIC6.96□□□□□ -1.3
HOXC9P31274 PAICS-201ENST00000264221 3339 ntAPPRIS P1 TSL 1 (best) BASIC6.96□□□□□ -1.3
HOXC9P31274 FLG-201ENST00000368799 12747 ntAPPRIS P1 TSL 1 (best) BASIC6.96□□□□□ -1.3
HOXC9P31274 AC012618.3-205ENST00000637896 1496 ntBASIC6.96□□□□□ -1.3
HOXC9P31274 C1orf140-202ENST00000439004 4340 ntTSL 1 (best) BASIC6.96□□□□□ -1.3
HOXC9P31274 ZNF630-207ENST00000616492 2220 ntAPPRIS ALT2 TSL 5 BASIC6.96□□□□□ -1.3
HOXC9P31274 PARD3B-214ENST00000622699 7442 ntTSL 5 BASIC6.96□□□□□ -1.3
Retrieved 100 of 98,524 protein–RNA pairs in 98.6 ms