Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 NR2F2-AS1-208ENST00000560395 441 ntTSL 5 BASIC7.63□□□□□ -1.19
TRAIPQ9BWF2 LINC2194-202ENST00000567624 506 ntTSL 3 BASIC7.63□□□□□ -1.19
TRAIPQ9BWF2 MIR3915-201ENST00000578518 97 ntBASIC7.63□□□□□ -1.19
TRAIPQ9BWF2 AC026620.1-201ENST00000584815 326 ntTSL 3 BASIC7.63□□□□□ -1.19
TRAIPQ9BWF2 AF131215.7-201ENST00000602443 707 ntBASIC7.63□□□□□ -1.19
TRAIPQ9BWF2 AC004987.4-201ENST00000603383 338 ntBASIC7.63□□□□□ -1.19
TRAIPQ9BWF2 AC095055.1-201ENST00000603472 1113 ntBASIC7.63□□□□□ -1.19
TRAIPQ9BWF2 AC104184.1-201ENST00000607513 721 ntBASIC7.63□□□□□ -1.19
TRAIPQ9BWF2 MIR6885-201ENST00000612241 66 ntBASIC7.63□□□□□ -1.19
TRAIPQ9BWF2 MRPL57P3-201ENST00000619218 176 ntBASIC7.63□□□□□ -1.19
TRAIPQ9BWF2 CT45A6-202ENST00000620654 878 ntAPPRIS P1 TSL 1 (best) BASIC7.63□□□□□ -1.19
TRAIPQ9BWF2 AL450990.1-201ENST00000632868 582 ntTSL 4 BASIC7.63□□□□□ -1.19
TRAIPQ9BWF2 AC127502.3-201ENST00000636170 1206 ntBASIC7.63□□□□□ -1.19
TRAIPQ9BWF2 MBD5-221ENST00000637159 902 ntTSL 5 BASIC7.63□□□□□ -1.19
TRAIPQ9BWF2 FCHSD2-205ENST00000409853 1867 ntTSL 1 (best) BASIC7.63□□□□□ -1.19
TRAIPQ9BWF2 UTP15-201ENST00000296792 3687 ntAPPRIS P1 TSL 1 (best) BASIC7.63□□□□□ -1.19
TRAIPQ9BWF2 NFATC3-201ENST00000329524 6144 ntTSL 1 (best) BASIC7.63□□□□□ -1.19
TRAIPQ9BWF2 SLC2A14-201ENST00000340749 3699 ntAPPRIS ALT2 TSL 2 BASIC7.63□□□□□ -1.19
TRAIPQ9BWF2 LPAR6-201ENST00000345941 2428 ntAPPRIS P1 TSL 2 BASIC7.63□□□□□ -1.19
TRAIPQ9BWF2 HTR2A-203ENST00000543956 4689 ntTSL 1 (best) BASIC7.63□□□□□ -1.19
TRAIPQ9BWF2 SMAD1-202ENST00000394092 1658 ntAPPRIS P1 TSL 1 (best) BASIC7.63□□□□□ -1.19
TRAIPQ9BWF2 PAICS-208ENST00000514888 3340 ntTSL 1 (best) BASIC7.63□□□□□ -1.19
TRAIPQ9BWF2 SEC62-201ENST00000337002 6568 ntAPPRIS P1 TSL 1 (best) BASIC7.63□□□□□ -1.19
TRAIPQ9BWF2 CDY19P-201ENST00000411668 1613 ntBASIC7.63□□□□□ -1.19
TRAIPQ9BWF2 CDY18P-201ENST00000438294 1609 ntBASIC7.63□□□□□ -1.19
TRAIPQ9BWF2 PPP4R3CP-201ENST00000412172 3131 ntAPPRIS P1 BASIC7.63□□□□□ -1.19
TRAIPQ9BWF2 PAX8-AS1-202ENST00000422956 11799 ntTSL 1 (best) BASIC7.63□□□□□ -1.19
TRAIPQ9BWF2 LINC00704-201ENST00000430998 1478 ntTSL 1 (best) BASIC7.62□□□□□ -1.19
TRAIPQ9BWF2 TTC21A-203ENST00000431162 4209 ntAPPRIS ALT2 TSL 1 (best) BASIC7.62□□□□□ -1.19
TRAIPQ9BWF2 ARHGAP20-203ENST00000527598 5998 ntAPPRIS ALT2 TSL 1 (best) BASIC7.62□□□□□ -1.19
TRAIPQ9BWF2 VDAC3-201ENST00000022615 1355 ntAPPRIS P3 TSL 1 (best) BASIC7.62□□□□□ -1.19
TRAIPQ9BWF2 AC092725.2-201ENST00000567658 1389 ntBASIC7.62□□□□□ -1.19
TRAIPQ9BWF2 TRPM6-204ENST00000449912 8244 ntAPPRIS P1 TSL 1 (best) BASIC7.62□□□□□ -1.19
TRAIPQ9BWF2 IL5RA-207ENST00000438560 2252 ntAPPRIS ALT2 TSL 2 BASIC7.62□□□□□ -1.19
TRAIPQ9BWF2 PMFBP1-201ENST00000237353 3527 ntAPPRIS P2 TSL 1 (best) BASIC7.62□□□□□ -1.19
TRAIPQ9BWF2 SH3D19-203ENST00000409598 5284 ntAPPRIS ALT1 TSL 1 (best) BASIC7.62□□□□□ -1.19
TRAIPQ9BWF2 ITCH-201ENST00000262650 3089 ntTSL 1 (best) BASIC7.62□□□□□ -1.19
TRAIPQ9BWF2 LRP2BP-203ENST00000510776 3055 ntTSL 1 (best) BASIC7.62□□□□□ -1.19
TRAIPQ9BWF2 LIN7A-204ENST00000552864 6112 ntAPPRIS P1 TSL 1 (best) BASIC7.62□□□□□ -1.19
TRAIPQ9BWF2 BLOC1S2-205ENST00000614731 2634 ntTSL 2 BASIC7.62□□□□□ -1.19
TRAIPQ9BWF2 OR2T7-201ENST00000641057 3463 ntAPPRIS P1 BASIC7.62□□□□□ -1.19
TRAIPQ9BWF2 DDX60-201ENST00000393743 6071 ntAPPRIS P1 TSL 1 (best) BASIC7.62□□□□□ -1.19
TRAIPQ9BWF2 AL391994.1-201ENST00000254724 282 ntBASIC7.62□□□□□ -1.19
TRAIPQ9BWF2 KIF27-201ENST00000297814 4653 ntAPPRIS P3 TSL 1 (best) BASIC7.62□□□□□ -1.19
TRAIPQ9BWF2 CLEC4A-202ENST00000345999 841 ntTSL 5 BASIC7.62□□□□□ -1.19
TRAIPQ9BWF2 Y_RNA.18-201ENST00000362461 102 ntBASIC7.62□□□□□ -1.19
TRAIPQ9BWF2 RNU6-623P-201ENST00000363143 105 ntBASIC7.62□□□□□ -1.19
TRAIPQ9BWF2 RNA5SP382-201ENST00000363355 112 ntBASIC7.62□□□□□ -1.19
TRAIPQ9BWF2 SNORA4.1-201ENST00000364263 144 ntBASIC7.62□□□□□ -1.19
TRAIPQ9BWF2 DEFB121-202ENST00000376314 389 ntAPPRIS P1 TSL 1 (best) BASIC7.62□□□□□ -1.19
TRAIPQ9BWF2 SUGT1P1-201ENST00000379514 476 ntBASIC7.62□□□□□ -1.19
TRAIPQ9BWF2 SNORD116-23-201ENST00000384645 92 ntBASIC7.62□□□□□ -1.19
TRAIPQ9BWF2 MIR92A2-201ENST00000385299 75 ntBASIC7.62□□□□□ -1.19
TRAIPQ9BWF2 AL353133.1-201ENST00000407695 401 ntBASIC7.62□□□□□ -1.19
TRAIPQ9BWF2 MIR1204-201ENST00000408388 67 ntBASIC7.62□□□□□ -1.19
TRAIPQ9BWF2 BTF3L4P1-201ENST00000413813 468 ntBASIC7.62□□□□□ -1.19
TRAIPQ9BWF2 AL512622.1-201ENST00000414106 481 ntTSL 3 BASIC7.62□□□□□ -1.19
TRAIPQ9BWF2 RPL17P17-201ENST00000419491 557 ntBASIC7.62□□□□□ -1.19
TRAIPQ9BWF2 AC009965.2-201ENST00000425328 970 ntBASIC7.62□□□□□ -1.19
TRAIPQ9BWF2 TRAPPC2P5-201ENST00000426293 308 ntBASIC7.62□□□□□ -1.19
TRAIPQ9BWF2 AC018804.1-201ENST00000430381 618 ntBASIC7.62□□□□□ -1.19
TRAIPQ9BWF2 AL138733.2-201ENST00000431947 804 ntTSL 5 BASIC7.62□□□□□ -1.19
TRAIPQ9BWF2 AL391361.2-203ENST00000443380 413 ntTSL 2 BASIC7.62□□□□□ -1.19
TRAIPQ9BWF2 RBMY3AP-201ENST00000449381 1145 ntBASIC7.62□□□□□ -1.19
TRAIPQ9BWF2 AL390728.3-201ENST00000452704 270 ntBASIC7.62□□□□□ -1.19
TRAIPQ9BWF2 YRDCP3-201ENST00000456507 480 ntBASIC7.62□□□□□ -1.19
TRAIPQ9BWF2 RPS26P11-201ENST00000463445 348 ntBASIC7.62□□□□□ -1.19
TRAIPQ9BWF2 RPS26P6-201ENST00000475156 348 ntBASIC7.62□□□□□ -1.19
TRAIPQ9BWF2 TFEC-208ENST00000484212 1245 ntTSL 2 BASIC7.62□□□□□ -1.19
TRAIPQ9BWF2 NCOR1P1-202ENST00000486162 291 ntBASIC7.62□□□□□ -1.19
TRAIPQ9BWF2 AC074386.1-206ENST00000487102 761 ntBASIC7.62□□□□□ -1.19
TRAIPQ9BWF2 ZNF138-207ENST00000494380 842 ntTSL 2 BASIC7.62□□□□□ -1.19
TRAIPQ9BWF2 AC092349.1-201ENST00000504903 310 ntBASIC7.62□□□□□ -1.19
TRAIPQ9BWF2 AC112225.1-201ENST00000508230 297 ntBASIC7.62□□□□□ -1.19
TRAIPQ9BWF2 CTD-2350J17.1-201ENST00000509228 362 ntTSL 2 BASIC7.62□□□□□ -1.19
TRAIPQ9BWF2 AC108866.1-202ENST00000511064 573 ntTSL 4 BASIC7.62□□□□□ -1.19
TRAIPQ9BWF2 OR5AK1P-201ENST00000524837 922 ntBASIC7.62□□□□□ -1.19
TRAIPQ9BWF2 KC877392.1-201ENST00000524855 426 ntTSL 3 BASIC7.62□□□□□ -1.19
TRAIPQ9BWF2 NPIPB1P-201ENST00000547442 1129 ntTSL 5 BASIC7.62□□□□□ -1.19
TRAIPQ9BWF2 AL133240.1-201ENST00000553537 580 ntTSL 4 BASIC7.62□□□□□ -1.19
TRAIPQ9BWF2 OR4C13-201ENST00000555099 1029 ntAPPRIS P1 BASIC7.62□□□□□ -1.19
TRAIPQ9BWF2 HNRNPCP1-201ENST00000556181 766 ntBASIC7.62□□□□□ -1.19
TRAIPQ9BWF2 ARPP19-205ENST00000563566 568 ntTSL 4 BASIC7.62□□□□□ -1.19
TRAIPQ9BWF2 AP005136.1-201ENST00000579765 429 ntBASIC7.62□□□□□ -1.19
TRAIPQ9BWF2 AC010327.4-201ENST00000585911 857 ntTSL 2 BASIC7.62□□□□□ -1.19
TRAIPQ9BWF2 AL136084.2-214ENST00000587726 716 ntTSL 5 BASIC7.62□□□□□ -1.19
TRAIPQ9BWF2 AC090771.2-201ENST00000588794 571 ntTSL 3 BASIC7.62□□□□□ -1.19
TRAIPQ9BWF2 AL031985.2-201ENST00000600955 480 ntBASIC7.62□□□□□ -1.19
TRAIPQ9BWF2 AL354760.1-201ENST00000608357 643 ntBASIC7.62□□□□□ -1.19
TRAIPQ9BWF2 AL136097.3-201ENST00000611097 505 ntBASIC7.62□□□□□ -1.19
TRAIPQ9BWF2 AC073114.1-201ENST00000612027 490 ntBASIC7.62□□□□□ -1.19
TRAIPQ9BWF2 AC015804.1-201ENST00000622935 435 ntBASIC7.62□□□□□ -1.19
TRAIPQ9BWF2 AC098679.4-201ENST00000624241 654 ntBASIC7.62□□□□□ -1.19
TRAIPQ9BWF2 MKKS-204ENST00000639674 192 ntBASIC7.62□□□□□ -1.19
TRAIPQ9BWF2 ATF6-201ENST00000367942 7496 ntAPPRIS P1 TSL 1 (best) BASIC7.62□□□□□ -1.19
TRAIPQ9BWF2 WDR48-201ENST00000302313 3707 ntAPPRIS P1 TSL 1 (best) BASIC7.62□□□□□ -1.19
TRAIPQ9BWF2 AQP4-201ENST00000383168 5274 ntAPPRIS P1 TSL 1 (best) BASIC7.62□□□□□ -1.19
TRAIPQ9BWF2 RPL37-201ENST00000274242 7686 ntAPPRIS P2 TSL 1 (best) BASIC7.62□□□□□ -1.19
TRAIPQ9BWF2 INTS2-201ENST00000251334 4255 ntAPPRIS P1 TSL 2 BASIC7.62□□□□□ -1.19
TRAIPQ9BWF2 LRRC37B-203ENST00000394713 3025 ntAPPRIS P3 TSL 1 (best) BASIC7.62□□□□□ -1.19
Retrieved 100 of 98,524 protein–RNA pairs in 84 ms