Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 KLHL4-201ENST00000373114 2445 ntTSL 1 (best) BASIC6.42□□□□□ -1.38
TRIM39Q9HCM9 LINC01951-201ENST00000377300 1925 ntTSL 2 BASIC6.42□□□□□ -1.38
TRIM39Q9HCM9 KCNJ1-203ENST00000392664 1674 ntTSL 1 (best) BASIC6.42□□□□□ -1.38
TRIM39Q9HCM9 LINC00284-201ENST00000423211 3208 ntTSL 2 BASIC6.42□□□□□ -1.38
TRIM39Q9HCM9 GTF2H2B-203ENST00000508065 1432 ntBASIC6.42□□□□□ -1.38
TRIM39Q9HCM9 DTNA-228ENST00000597674 1732 ntTSL 1 (best) BASIC6.42□□□□□ -1.38
TRIM39Q9HCM9 ZNF675-201ENST00000359788 2301 ntAPPRIS P1 TSL 1 (best) BASIC6.42□□□□□ -1.38
TRIM39Q9HCM9 ROR1-204ENST00000545203 5362 ntAPPRIS ALT2 TSL 5 BASIC6.42□□□□□ -1.38
TRIM39Q9HCM9 ATMIN-204ENST00000564241 4803 ntTSL 1 (best) BASIC6.42□□□□□ -1.38
TRIM39Q9HCM9 PSG10P-201ENST00000501199 1500 ntBASIC6.42□□□□□ -1.38
TRIM39Q9HCM9 C12orf50-203ENST00000550553 1525 ntTSL 5 BASIC6.42□□□□□ -1.38
TRIM39Q9HCM9 ZC3H8-208ENST00000615791 1527 ntAPPRIS ALT2 TSL 5 BASIC6.42□□□□□ -1.38
TRIM39Q9HCM9 SCGB1D4-201ENST00000358585 439 ntAPPRIS P1 TSL 1 (best) BASIC6.42□□□□□ -1.38
TRIM39Q9HCM9 RNA5SP188-201ENST00000362916 129 ntBASIC6.42□□□□□ -1.38
TRIM39Q9HCM9 RNA5SP514-201ENST00000363717 111 ntBASIC6.42□□□□□ -1.38
TRIM39Q9HCM9 TINAG-202ENST00000370864 692 ntTSL 2 BASIC6.42□□□□□ -1.38
TRIM39Q9HCM9 LYZL1-201ENST00000375500 815 ntAPPRIS P1 TSL 1 (best) BASIC6.42□□□□□ -1.38
TRIM39Q9HCM9 EEF1AKMT1-201ENST00000382754 875 ntAPPRIS P1 TSL 1 (best) BASIC6.42□□□□□ -1.38
TRIM39Q9HCM9 AL391419.1-201ENST00000398901 1275 ntBASIC6.42□□□□□ -1.38
TRIM39Q9HCM9 AL445238.1-204ENST00000400311 463 ntBASIC6.42□□□□□ -1.38
TRIM39Q9HCM9 SLC3A1-203ENST00000409294 792 ntTSL 2 BASIC6.42□□□□□ -1.38
TRIM39Q9HCM9 C9orf147-201ENST00000412934 584 ntTSL 3 BASIC6.42□□□□□ -1.38
TRIM39Q9HCM9 TEX50-201ENST00000417563 821 ntAPPRIS P1 TSL 2 BASIC6.42□□□□□ -1.38
TRIM39Q9HCM9 RPL7AP51-201ENST00000422016 760 ntBASIC6.42□□□□□ -1.38
TRIM39Q9HCM9 AC005165.1-203ENST00000423689 1281 ntTSL 3 BASIC6.42□□□□□ -1.38
TRIM39Q9HCM9 YWHAEP5-201ENST00000431545 765 ntBASIC6.42□□□□□ -1.38
TRIM39Q9HCM9 HTR5BP-202ENST00000434708 1193 ntTSL 1 (best) BASIC6.42□□□□□ -1.38
TRIM39Q9HCM9 AC093639.1-201ENST00000441026 473 ntTSL 2 BASIC6.42□□□□□ -1.38
TRIM39Q9HCM9 AL021937.4-201ENST00000444848 444 ntTSL 3 BASIC6.42□□□□□ -1.38
TRIM39Q9HCM9 AL050338.1-201ENST00000445585 786 ntTSL 3 BASIC6.42□□□□□ -1.38
TRIM39Q9HCM9 AC211433.1-201ENST00000450426 686 ntTSL 4 BASIC6.42□□□□□ -1.38
TRIM39Q9HCM9 YRDCP3-201ENST00000456507 480 ntBASIC6.42□□□□□ -1.38
TRIM39Q9HCM9 AC002075.1-201ENST00000457396 676 ntBASIC6.42□□□□□ -1.38
TRIM39Q9HCM9 CPHL1P-204ENST00000482639 584 ntTSL 5 BASIC6.42□□□□□ -1.38
TRIM39Q9HCM9 AC022415.1-202ENST00000486612 523 ntBASIC6.42□□□□□ -1.38
TRIM39Q9HCM9 LINC02025-201ENST00000488348 360 ntTSL 3 BASIC6.42□□□□□ -1.38
TRIM39Q9HCM9 MGAT4A-209ENST00000495056 683 ntTSL 2 BASIC6.42□□□□□ -1.38
TRIM39Q9HCM9 SNHG27-202ENST00000507933 491 ntTSL 2 BASIC6.42□□□□□ -1.38
TRIM39Q9HCM9 AC109464.1-201ENST00000511091 819 ntBASIC6.42□□□□□ -1.38
TRIM39Q9HCM9 MRPS33P3-201ENST00000513456 322 ntBASIC6.42□□□□□ -1.38
TRIM39Q9HCM9 AC097537.1-201ENST00000514864 1213 ntTSL 1 (best) BASIC6.42□□□□□ -1.38
TRIM39Q9HCM9 LINC01030-201ENST00000517505 738 ntTSL 3 BASIC6.42□□□□□ -1.38
TRIM39Q9HCM9 AC110011.1-201ENST00000518260 582 ntTSL 3 BASIC6.42□□□□□ -1.38
TRIM39Q9HCM9 AC067817.1-201ENST00000518535 356 ntTSL 2 BASIC6.42□□□□□ -1.38
TRIM39Q9HCM9 AC116917.1-201ENST00000520558 305 ntBASIC6.42□□□□□ -1.38
TRIM39Q9HCM9 AP001000.1-201ENST00000526843 742 ntBASIC6.42□□□□□ -1.38
TRIM39Q9HCM9 NAV2-IT1-201ENST00000528204 506 ntTSL 1 (best) BASIC6.42□□□□□ -1.38
TRIM39Q9HCM9 AC022509.1-202ENST00000537525 494 ntTSL 4 BASIC6.42□□□□□ -1.38
TRIM39Q9HCM9 AC009387.1-201ENST00000549163 441 ntTSL 3 BASIC6.42□□□□□ -1.38
TRIM39Q9HCM9 AL133163.3-201ENST00000556448 504 ntTSL 5 BASIC6.42□□□□□ -1.38
TRIM39Q9HCM9 AC087190.2-201ENST00000565648 731 ntTSL 3 BASIC6.42□□□□□ -1.38
TRIM39Q9HCM9 AC138207.8-204ENST00000579588 527 ntBASIC6.42□□□□□ -1.38
TRIM39Q9HCM9 AC006305.2-201ENST00000589617 552 ntTSL 4 BASIC6.42□□□□□ -1.38
TRIM39Q9HCM9 AC063977.7-201ENST00000594454 337 ntBASIC6.42□□□□□ -1.38
TRIM39Q9HCM9 ZNF675-208ENST00000601010 669 ntTSL 5 BASIC6.42□□□□□ -1.38
TRIM39Q9HCM9 AL078623.1-201ENST00000602702 907 ntBASIC6.42□□□□□ -1.38
TRIM39Q9HCM9 AL683813.2-201ENST00000605245 502 ntBASIC6.42□□□□□ -1.38
TRIM39Q9HCM9 AC012557.2-201ENST00000605919 418 ntBASIC6.42□□□□□ -1.38
TRIM39Q9HCM9 AL135786.2-201ENST00000608422 615 ntBASIC6.42□□□□□ -1.38
TRIM39Q9HCM9 AC022106.1-201ENST00000612834 766 ntBASIC6.42□□□□□ -1.38
TRIM39Q9HCM9 AL603755.1-201ENST00000619504 163 ntBASIC6.42□□□□□ -1.38
TRIM39Q9HCM9 PPP3CB-AS1-213ENST00000620302 501 ntTSL 5 BASIC6.42□□□□□ -1.38
TRIM39Q9HCM9 AC007490.1-201ENST00000624321 703 ntBASIC6.42□□□□□ -1.38
TRIM39Q9HCM9 LINC02495-203ENST00000636704 242 ntBASIC6.42□□□□□ -1.38
TRIM39Q9HCM9 AC021086.1-201ENST00000499025 1569 ntTSL 3 BASIC6.42□□□□□ -1.38
TRIM39Q9HCM9 TRPC4-207ENST00000426868 2709 ntTSL 2 BASIC6.42□□□□□ -1.38
TRIM39Q9HCM9 FGFR2-205ENST00000357555 3690 ntTSL 2 BASIC6.42□□□□□ -1.38
TRIM39Q9HCM9 AC104446.1-201ENST00000613728 1321 ntBASIC6.42□□□□□ -1.38
TRIM39Q9HCM9 HOXD8-202ENST00000429017 1608 ntTSL 2 BASIC6.42□□□□□ -1.38
TRIM39Q9HCM9 SV2B-202ENST00000394232 11279 ntAPPRIS P1 TSL 5 BASIC6.42□□□□□ -1.38
TRIM39Q9HCM9 AHNAK2-201ENST00000333244 18254 ntAPPRIS P1 TSL 5 BASIC6.42□□□□□ -1.38
TRIM39Q9HCM9 L3MBTL3-209ENST00000533560 3165 ntAPPRIS ALT2 TSL 1 (best) BASIC6.42□□□□□ -1.38
TRIM39Q9HCM9 PSG6-202ENST00000292125 1391 ntAPPRIS P3 TSL 1 (best) BASIC6.42□□□□□ -1.38
TRIM39Q9HCM9 AC010624.4-201ENST00000597606 1351 ntBASIC6.42□□□□□ -1.38
TRIM39Q9HCM9 TDRD1-201ENST00000251864 4510 ntAPPRIS P2 TSL 1 (best) BASIC6.42□□□□□ -1.38
TRIM39Q9HCM9 PSMB2-202ENST00000621781 4217 ntTSL 1 (best) BASIC6.42□□□□□ -1.38
TRIM39Q9HCM9 MDGA2-201ENST00000357362 2965 ntTSL 5 BASIC6.42□□□□□ -1.38
TRIM39Q9HCM9 CLEC9A-201ENST00000355819 1734 ntAPPRIS P1 TSL 1 (best) BASIC6.42□□□□□ -1.38
TRIM39Q9HCM9 SLC1A2-202ENST00000395750 11538 ntAPPRIS ALT1 TSL 1 (best) BASIC6.42□□□□□ -1.38
TRIM39Q9HCM9 RNF133-201ENST00000340112 1445 ntAPPRIS P1 BASIC6.42□□□□□ -1.38
TRIM39Q9HCM9 TOX3-202ENST00000407228 3124 ntAPPRIS ALT2 TSL 2 BASIC6.41□□□□□ -1.38
TRIM39Q9HCM9 DDX6-207ENST00000617381 2883 ntTSL 1 (best) BASIC6.41□□□□□ -1.38
TRIM39Q9HCM9 EPB41L2-220ENST00000528282 3663 ntAPPRIS ALT2 TSL 1 (best) BASIC6.41□□□□□ -1.38
TRIM39Q9HCM9 TLR10-208ENST00000622002 3673 ntAPPRIS P1 TSL 3 BASIC6.41□□□□□ -1.38
TRIM39Q9HCM9 BDNF-205ENST00000395981 4071 ntAPPRIS P1 TSL 1 (best) BASIC6.41□□□□□ -1.38
TRIM39Q9HCM9 TYW3-201ENST00000370867 3430 ntAPPRIS P1 TSL 1 (best) BASIC6.41□□□□□ -1.38
TRIM39Q9HCM9 YES1P1-201ENST00000418510 1628 ntBASIC6.41□□□□□ -1.38
TRIM39Q9HCM9 LINC00702-203ENST00000608792 6300 ntTSL 4 BASIC6.41□□□□□ -1.38
TRIM39Q9HCM9 AL451142.1-201ENST00000375867 775 ntBASIC6.41□□□□□ -1.38
TRIM39Q9HCM9 TOMM6-202ENST00000398884 637 ntAPPRIS P1 TSL 1 (best) BASIC6.41□□□□□ -1.38
TRIM39Q9HCM9 ERHP2-201ENST00000402323 299 ntBASIC6.41□□□□□ -1.38
TRIM39Q9HCM9 FBXO11-203ENST00000405808 299 ntTSL 5 BASIC6.41□□□□□ -1.38
TRIM39Q9HCM9 AL023284.3-201ENST00000407767 334 ntBASIC6.41□□□□□ -1.38
TRIM39Q9HCM9 LINC01811-201ENST00000415991 594 ntTSL 5 BASIC6.41□□□□□ -1.38
TRIM39Q9HCM9 PCDH9-AS2-201ENST00000419371 538 ntTSL 3 BASIC6.41□□□□□ -1.38
TRIM39Q9HCM9 AL139184.1-202ENST00000422303 222 ntBASIC6.41□□□□□ -1.38
TRIM39Q9HCM9 AL390115.1-201ENST00000425271 423 ntTSL 5 BASIC6.41□□□□□ -1.38
TRIM39Q9HCM9 AC244453.3-201ENST00000426275 459 ntTSL 5 BASIC6.41□□□□□ -1.38
TRIM39Q9HCM9 AC093151.2-201ENST00000429109 394 ntTSL 3 BASIC6.41□□□□□ -1.38
TRIM39Q9HCM9 AC006369.2-201ENST00000431712 384 ntTSL 3 BASIC6.41□□□□□ -1.38
Retrieved 100 of 98,524 protein–RNA pairs in 91.2 ms