Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 BX119917.1-201ENST00000432517 502 ntBASIC5.73□□□□□ -1.49
CCDC140Q96MF4 RPL39L-202ENST00000433055 749 ntAPPRIS P1 TSL 2 BASIC5.73□□□□□ -1.49
CCDC140Q96MF4 AC244505.2-201ENST00000435089 759 ntBASIC5.73□□□□□ -1.49
CCDC140Q96MF4 AL731892.1-201ENST00000437364 1192 ntBASIC5.73□□□□□ -1.49
CCDC140Q96MF4 AC092427.1-201ENST00000439177 601 ntBASIC5.73□□□□□ -1.49
CCDC140Q96MF4 DIAPH2-AS1-201ENST00000439759 971 ntTSL 3 BASIC5.73□□□□□ -1.49
CCDC140Q96MF4 AL022238.1-201ENST00000442557 355 ntBASIC5.73□□□□□ -1.49
CCDC140Q96MF4 FUNDC2P2-202ENST00000443452 493 ntBASIC5.73□□□□□ -1.49
CCDC140Q96MF4 VN1R10P-201ENST00000447106 875 ntBASIC5.73□□□□□ -1.49
CCDC140Q96MF4 ETV5-AS1-201ENST00000453370 560 ntTSL 4 BASIC5.73□□□□□ -1.49
CCDC140Q96MF4 PXT1-201ENST00000454782 2108 ntAPPRIS P2 TSL 1 (best) BASIC5.73□□□□□ -1.49
CCDC140Q96MF4 MEMO1P3-201ENST00000459811 302 ntBASIC5.73□□□□□ -1.49
CCDC140Q96MF4 UMAD1-204ENST00000482067 569 ntTSL 5 BASIC5.73□□□□□ -1.49
CCDC140Q96MF4 AC078785.1-205ENST00000491578 482 ntTSL 4 BASIC5.73□□□□□ -1.49
CCDC140Q96MF4 AC090638.1-201ENST00000498296 909 ntBASIC5.73□□□□□ -1.49
CCDC140Q96MF4 AC116353.2-201ENST00000505332 712 ntBASIC5.73□□□□□ -1.49
CCDC140Q96MF4 ST13P12-201ENST00000508958 1094 ntBASIC5.73□□□□□ -1.49
CCDC140Q96MF4 OR5F2P-201ENST00000532761 941 ntBASIC5.73□□□□□ -1.49
CCDC140Q96MF4 AC027804.1-201ENST00000534653 529 ntTSL 2 BASIC5.73□□□□□ -1.49
CCDC140Q96MF4 AL157756.1-203ENST00000553269 600 ntTSL 3 BASIC5.73□□□□□ -1.49
CCDC140Q96MF4 DNAL1-205ENST00000554339 548 ntTSL 5 BASIC5.73□□□□□ -1.49
CCDC140Q96MF4 SERPINE4P-201ENST00000554978 281 ntBASIC5.73□□□□□ -1.49
CCDC140Q96MF4 AC092325.1-201ENST00000566449 554 ntBASIC5.73□□□□□ -1.49
CCDC140Q96MF4 AC068135.2-201ENST00000569293 1028 ntBASIC5.73□□□□□ -1.49
CCDC140Q96MF4 AC104581.3-201ENST00000573621 348 ntAPPRIS P1 TSL 5 BASIC5.73□□□□□ -1.49
CCDC140Q96MF4 RN7SL835P-201ENST00000579920 262 ntBASIC5.73□□□□□ -1.49
CCDC140Q96MF4 AC011824.2-203ENST00000579975 633 ntTSL 3 BASIC5.73□□□□□ -1.49
CCDC140Q96MF4 AC005323.1-203ENST00000585303 566 ntTSL 5 BASIC5.73□□□□□ -1.49
CCDC140Q96MF4 AC118757.1-202ENST00000589074 609 ntTSL 2 BASIC5.73□□□□□ -1.49
CCDC140Q96MF4 BNIP3P23-201ENST00000599655 511 ntBASIC5.73□□□□□ -1.49
CCDC140Q96MF4 AL023806.2-201ENST00000603042 263 ntBASIC5.73□□□□□ -1.49
CCDC140Q96MF4 PRELID3BP8-201ENST00000604148 295 ntBASIC5.73□□□□□ -1.49
CCDC140Q96MF4 RPS28P1-201ENST00000604589 187 ntBASIC5.73□□□□□ -1.49
CCDC140Q96MF4 AL136985.2-201ENST00000607372 535 ntBASIC5.73□□□□□ -1.49
CCDC140Q96MF4 AC243773.3-201ENST00000613270 256 ntBASIC5.73□□□□□ -1.49
CCDC140Q96MF4 AC091834.1-201ENST00000614543 472 ntBASIC5.73□□□□□ -1.49
CCDC140Q96MF4 AC090517.2-201ENST00000614966 680 ntBASIC5.73□□□□□ -1.49
CCDC140Q96MF4 AC211486.5-201ENST00000616609 775 ntTSL 3 BASIC5.73□□□□□ -1.49
CCDC140Q96MF4 MIR6736-201ENST00000616799 59 ntBASIC5.73□□□□□ -1.49
CCDC140Q96MF4 IL13-206ENST00000617259 498 ntAPPRIS ALT2 TSL 5 BASIC5.73□□□□□ -1.49
CCDC140Q96MF4 BRCC3-209ENST00000620502 882 ntAPPRIS ALT2 TSL 5 BASIC5.73□□□□□ -1.49
CCDC140Q96MF4 AL008636.1-201ENST00000625038 1018 ntBASIC5.73□□□□□ -1.49
CCDC140Q96MF4 AL034408.1-201ENST00000637712 664 ntBASIC5.73□□□□□ -1.49
CCDC140Q96MF4 PRPS1L1-202ENST00000638645 957 ntAPPRIS P2 BASIC5.73□□□□□ -1.49
CCDC140Q96MF4 FAR2-202ENST00000536681 3616 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
CCDC140Q96MF4 CDON-202ENST00000392693 9138 ntAPPRIS ALT2 TSL 1 (best) BASIC5.73□□□□□ -1.49
CCDC140Q96MF4 PLP1-220ENST00000612423 3132 ntAPPRIS P1 TSL 2 BASIC5.73□□□□□ -1.49
CCDC140Q96MF4 AF131215.2-201ENST00000531549 1710 ntBASIC5.73□□□□□ -1.49
CCDC140Q96MF4 CENPJ-201ENST00000381884 4347 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
CCDC140Q96MF4 HPGDS-201ENST00000295256 1636 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
CCDC140Q96MF4 CNTN4-AS1-201ENST00000442749 1640 ntTSL 3 BASIC5.73□□□□□ -1.49
CCDC140Q96MF4 OR8H1-203ENST00000641600 2927 ntAPPRIS P2 BASIC5.73□□□□□ -1.49
CCDC140Q96MF4 NT5C2-203ENST00000404739 3365 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
CCDC140Q96MF4 AL162425.1-201ENST00000423637 1525 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
CCDC140Q96MF4 MMS22L-201ENST00000275053 8643 ntAPPRIS P1 TSL 2 BASIC5.73□□□□□ -1.49
CCDC140Q96MF4 UTY-213ENST00000612274 6586 ntAPPRIS ALT2 TSL 1 (best) BASIC5.73□□□□□ -1.49
CCDC140Q96MF4 GSTM2-207ENST00000460717 1449 ntTSL 2 BASIC5.73□□□□□ -1.49
CCDC140Q96MF4 ALB-219ENST00000621085 1418 ntTSL 5 BASIC5.73□□□□□ -1.49
CCDC140Q96MF4 C11orf72-201ENST00000333139 2431 ntTSL 2 BASIC5.73□□□□□ -1.49
CCDC140Q96MF4 OR10AD1-201ENST00000310248 1305 ntAPPRIS P1 BASIC5.73□□□□□ -1.49
CCDC140Q96MF4 GDI2P1-201ENST00000429312 1336 ntBASIC5.73□□□□□ -1.49
CCDC140Q96MF4 AL162726.3-201ENST00000637606 1301 ntTSL 5 BASIC5.73□□□□□ -1.49
CCDC140Q96MF4 NUP214-202ENST00000411637 7538 ntAPPRIS ALT2 TSL 1 (best) BASIC5.73□□□□□ -1.49
CCDC140Q96MF4 AC106799.3-201ENST00000562127 3300 ntTSL 2 BASIC5.73□□□□□ -1.49
CCDC140Q96MF4 P2RY12-201ENST00000302632 1766 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
CCDC140Q96MF4 LINC01232-204ENST00000626729 2796 ntTSL 2 BASIC5.72□□□□□ -1.49
CCDC140Q96MF4 METTL8-217ENST00000612742 8132 ntAPPRIS P1 TSL 2 BASIC5.72□□□□□ -1.49
CCDC140Q96MF4 POGZ-213ENST00000491586 4130 ntTSL 5 BASIC5.72□□□□□ -1.49
CCDC140Q96MF4 LINC02511-201ENST00000505736 1668 ntTSL 5 BASIC5.72□□□□□ -1.49
CCDC140Q96MF4 FOLH1B-202ENST00000529567 2145 ntBASIC5.72□□□□□ -1.49
CCDC140Q96MF4 RBM41-202ENST00000372487 2579 ntAPPRIS ALT1 TSL 2 BASIC5.72□□□□□ -1.49
CCDC140Q96MF4 OR52B5P-204ENST00000641744 3467 ntBASIC5.72□□□□□ -1.49
CCDC140Q96MF4 TP63-207ENST00000418709 2810 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
CCDC140Q96MF4 C8orf34-208ENST00000523686 1948 ntAPPRIS ALT2 TSL 2 BASIC5.72□□□□□ -1.49
CCDC140Q96MF4 AC095050.2-201ENST00000510748 1458 ntBASIC5.72□□□□□ -1.49
CCDC140Q96MF4 SLC14A2-203ENST00000586448 3540 ntAPPRIS P1 TSL 2 BASIC5.72□□□□□ -1.49
CCDC140Q96MF4 NBPF12-203ENST00000611443 5594 ntTSL 5 BASIC5.72□□□□□ -1.49
CCDC140Q96MF4 STXBP4-202ENST00000398391 2160 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
CCDC140Q96MF4 EEF1A1P22-201ENST00000559385 1380 ntBASIC5.72□□□□□ -1.49
CCDC140Q96MF4 NDRG3-203ENST00000373773 2098 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
CCDC140Q96MF4 CASC19-204ENST00000641001 2055 ntBASIC5.72□□□□□ -1.49
CCDC140Q96MF4 AL138847.1-201ENST00000258651 546 ntBASIC5.72□□□□□ -1.49
CCDC140Q96MF4 DEFB128-201ENST00000334391 373 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
CCDC140Q96MF4 KLRG1-202ENST00000356986 1206 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
CCDC140Q96MF4 RNA5SP260-201ENST00000363849 111 ntBASIC5.72□□□□□ -1.49
CCDC140Q96MF4 RN7SKP226-201ENST00000364912 300 ntBASIC5.72□□□□□ -1.49
CCDC140Q96MF4 LINC00474-201ENST00000374014 769 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
CCDC140Q96MF4 Y_RNA.554-201ENST00000384672 102 ntBASIC5.72□□□□□ -1.49
CCDC140Q96MF4 TRBV9-201ENST00000390363 390 ntAPPRIS P1 BASIC5.72□□□□□ -1.49
CCDC140Q96MF4 IGHV4-34-201ENST00000390616 400 ntAPPRIS P1 BASIC5.72□□□□□ -1.49
CCDC140Q96MF4 Y_RNA.582-201ENST00000391023 95 ntBASIC5.72□□□□□ -1.49
CCDC140Q96MF4 RAP1BP3-201ENST00000407180 549 ntBASIC5.72□□□□□ -1.49
CCDC140Q96MF4 AL139128.1-201ENST00000413921 941 ntBASIC5.72□□□□□ -1.49
CCDC140Q96MF4 AC009413.1-201ENST00000414823 399 ntBASIC5.72□□□□□ -1.49
CCDC140Q96MF4 AC068286.1-201ENST00000416173 467 ntTSL 4 BASIC5.72□□□□□ -1.49
CCDC140Q96MF4 AL593856.1-201ENST00000419949 805 ntBASIC5.72□□□□□ -1.49
CCDC140Q96MF4 PGM5-AS1-202ENST00000420855 572 ntTSL 3 BASIC5.72□□□□□ -1.49
CCDC140Q96MF4 FRMPD4-AS1-201ENST00000425057 285 ntTSL 3 BASIC5.72□□□□□ -1.49
CCDC140Q96MF4 AC024619.1-202ENST00000426489 495 ntTSL 3 BASIC5.72□□□□□ -1.49
CCDC140Q96MF4 VN1R54P-201ENST00000435210 1049 ntBASIC5.72□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 87.1 ms