Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 LINC00282-202ENST00000627246 4008 ntAPPRIS P5 TSL 2 BASIC7.12□□□□□ -1.27
HOXC9P31274 OR5AS1-201ENST00000313555 975 ntAPPRIS P1 BASIC7.12□□□□□ -1.27
HOXC9P31274 FAS-203ENST00000355279 983 ntTSL 1 (best) BASIC7.12□□□□□ -1.27
HOXC9P31274 U3.3-201ENST00000362986 216 ntBASIC7.12□□□□□ -1.27
HOXC9P31274 RNA5SP123-201ENST00000363244 119 ntBASIC7.12□□□□□ -1.27
HOXC9P31274 SNORA51.8-201ENST00000384234 132 ntBASIC7.12□□□□□ -1.27
HOXC9P31274 SMIM2-IT1-201ENST00000415082 478 ntTSL 3 BASIC7.12□□□□□ -1.27
HOXC9P31274 RPL23AP18-201ENST00000416139 468 ntBASIC7.12□□□□□ -1.27
HOXC9P31274 TRBV29-1-201ENST00000422143 402 ntAPPRIS P1 BASIC7.12□□□□□ -1.27
HOXC9P31274 AC068481.1-202ENST00000428379 555 ntTSL 4 BASIC7.12□□□□□ -1.27
HOXC9P31274 AC007327.2-201ENST00000440788 457 ntTSL 3 BASIC7.12□□□□□ -1.27
HOXC9P31274 SORCS3-AS1-201ENST00000449805 1278 ntTSL 1 (best) BASIC7.12□□□□□ -1.27
HOXC9P31274 AC068489.1-201ENST00000453706 261 ntTSL 5 BASIC7.12□□□□□ -1.27
HOXC9P31274 RN7SL591P-201ENST00000496150 292 ntBASIC7.12□□□□□ -1.27
HOXC9P31274 MSC-AS1-205ENST00000519068 569 ntTSL 3 BASIC7.12□□□□□ -1.27
HOXC9P31274 AP003696.1-201ENST00000519337 770 ntTSL 3 BASIC7.12□□□□□ -1.27
HOXC9P31274 AC025263.2-201ENST00000550437 548 ntAPPRIS P1 TSL 5 BASIC7.12□□□□□ -1.27
HOXC9P31274 AC007448.2-201ENST00000583452 380 ntTSL 3 BASIC7.12□□□□□ -1.27
HOXC9P31274 Z98949.1-211ENST00000596813 773 ntTSL 5 BASIC7.12□□□□□ -1.27
HOXC9P31274 AC018695.3-201ENST00000602617 408 ntTSL 2 BASIC7.12□□□□□ -1.27
HOXC9P31274 AL049840.6-202ENST00000603373 279 ntBASIC7.12□□□□□ -1.27
HOXC9P31274 AC008555.3-201ENST00000603717 442 ntTSL 3 BASIC7.12□□□□□ -1.27
HOXC9P31274 AC087783.2-201ENST00000605070 562 ntBASIC7.12□□□□□ -1.27
HOXC9P31274 AL353729.2-201ENST00000605859 1249 ntBASIC7.12□□□□□ -1.27
HOXC9P31274 MMP12-201ENST00000571244 1874 ntAPPRIS P1 TSL 1 (best) BASIC7.12□□□□□ -1.27
HOXC9P31274 ADAM18-201ENST00000265707 2388 ntAPPRIS P3 TSL 1 (best) BASIC7.12□□□□□ -1.27
HOXC9P31274 ZC3H12C-202ENST00000453089 9542 ntTSL 2 BASIC7.12□□□□□ -1.27
HOXC9P31274 AC092958.1-201ENST00000467198 2569 ntTSL 2 BASIC7.12□□□□□ -1.27
HOXC9P31274 RUFY3-202ENST00000381006 3098 ntAPPRIS P1 TSL 5 BASIC7.12□□□□□ -1.27
HOXC9P31274 OR10G4-203ENST00000641722 3301 ntAPPRIS P1 BASIC7.11□□□□□ -1.27
HOXC9P31274 ZNF528-203ENST00000391788 4209 ntTSL 2 BASIC7.11□□□□□ -1.27
HOXC9P31274 LGALS8-220ENST00000526634 1852 ntAPPRIS ALT2 TSL 5 BASIC7.11□□□□□ -1.27
HOXC9P31274 CASC15-206ENST00000606851 1889 ntTSL 2 BASIC7.11□□□□□ -1.27
HOXC9P31274 AC127164.1-201ENST00000548738 4196 ntTSL 2 BASIC7.11□□□□□ -1.27
HOXC9P31274 DOCK9-216ENST00000627024 4096 ntTSL 2 BASIC7.11□□□□□ -1.27
HOXC9P31274 CADM2-202ENST00000405615 1314 ntAPPRIS P3 TSL 1 (best) BASIC7.11□□□□□ -1.27
HOXC9P31274 LMNTD1-207ENST00000539744 1729 ntAPPRIS ALT2 TSL 1 (best) BASIC7.11□□□□□ -1.27
HOXC9P31274 SNORA56-201ENST00000383966 129 ntBASIC7.11□□□□□ -1.27
HOXC9P31274 CHMP1B2P-201ENST00000399581 597 ntBASIC7.11□□□□□ -1.27
HOXC9P31274 C2orf73-203ENST00000405749 576 ntTSL 4 BASIC7.11□□□□□ -1.27
HOXC9P31274 AC008060.2-201ENST00000415333 468 ntTSL 3 BASIC7.11□□□□□ -1.27
HOXC9P31274 AL354863.1-202ENST00000431695 494 ntTSL 5 BASIC7.11□□□□□ -1.27
HOXC9P31274 AC108161.1-201ENST00000461060 402 ntBASIC7.11□□□□□ -1.27
HOXC9P31274 RN7SL188P-201ENST00000469842 285 ntBASIC7.11□□□□□ -1.27
HOXC9P31274 AC080162.1-201ENST00000480764 491 ntTSL 3 BASIC7.11□□□□□ -1.27
HOXC9P31274 IGLV2-34-201ENST00000490007 283 ntBASIC7.11□□□□□ -1.27
HOXC9P31274 RPL37AP8-201ENST00000494116 276 ntBASIC7.11□□□□□ -1.27
HOXC9P31274 AC105233.1-201ENST00000498840 781 ntBASIC7.11□□□□□ -1.27
HOXC9P31274 ARL6IP1P3-201ENST00000524544 560 ntBASIC7.11□□□□□ -1.27
HOXC9P31274 AC025423.4-201ENST00000553141 785 ntTSL 3 BASIC7.11□□□□□ -1.27
HOXC9P31274 USP3-AS1-202ENST00000559357 455 ntTSL 2 BASIC7.11□□□□□ -1.27
HOXC9P31274 POU1F1-203ENST00000560656 647 ntTSL 5 BASIC7.11□□□□□ -1.27
HOXC9P31274 MIR4480-201ENST00000582492 71 ntBASIC7.11□□□□□ -1.27
HOXC9P31274 AC015878.1-201ENST00000584611 679 ntTSL 3 BASIC7.11□□□□□ -1.27
HOXC9P31274 AL034374.2-201ENST00000605281 548 ntBASIC7.11□□□□□ -1.27
HOXC9P31274 AC015660.5-201ENST00000623238 564 ntBASIC7.11□□□□□ -1.27
HOXC9P31274 AC093495.1-217ENST00000627385 428 ntTSL 5 BASIC7.11□□□□□ -1.27
HOXC9P31274 TRPM6-204ENST00000449912 8244 ntAPPRIS P1 TSL 1 (best) BASIC7.11□□□□□ -1.27
HOXC9P31274 RNASEL-202ENST00000539397 4046 ntTSL 2 BASIC7.11□□□□□ -1.27
HOXC9P31274 KCNJ15-201ENST00000328656 8399 ntAPPRIS P1 TSL 1 (best) BASIC7.11□□□□□ -1.27
HOXC9P31274 KMO-203ENST00000366558 1868 ntAPPRIS ALT2 TSL 1 (best) BASIC7.11□□□□□ -1.27
HOXC9P31274 DNHD1-212ENST00000527990 14298 ntAPPRIS P1 TSL 5 BASIC7.11□□□□□ -1.27
HOXC9P31274 TRPC4-201ENST00000338947 2912 ntTSL 5 BASIC7.11□□□□□ -1.27
HOXC9P31274 AC004784.1-201ENST00000635495 1833 ntTSL 5 BASIC7.11□□□□□ -1.27
HOXC9P31274 ZNF573-202ENST00000357309 2124 ntTSL 5 BASIC7.1□□□□□ -1.27
HOXC9P31274 MARCH7-201ENST00000259050 5922 ntAPPRIS P1 TSL 1 (best) BASIC7.1□□□□□ -1.27
HOXC9P31274 ADGRE1-202ENST00000312053 3128 ntAPPRIS P3 TSL 1 (best) BASIC7.1□□□□□ -1.27
HOXC9P31274 SLC12A6-216ENST00000560164 3744 ntTSL 2 BASIC7.1□□□□□ -1.27
HOXC9P31274 ACSL5-202ENST00000354655 3351 ntAPPRIS P1 TSL 2 BASIC7.1□□□□□ -1.27
HOXC9P31274 IKZF2-210ENST00000451136 9344 ntTSL 5 BASIC7.1□□□□□ -1.27
HOXC9P31274 DCLRE1A-201ENST00000361384 4468 ntAPPRIS P1 TSL 1 (best) BASIC7.1□□□□□ -1.27
HOXC9P31274 RNASE9-201ENST00000338904 1049 ntAPPRIS P3 TSL 1 (best) BASIC7.1□□□□□ -1.27
HOXC9P31274 SPATA42-201ENST00000369989 535 ntTSL 1 (best) BASIC7.1□□□□□ -1.27
HOXC9P31274 TRBV24-1-201ENST00000390397 381 ntAPPRIS P1 BASIC7.1□□□□□ -1.27
HOXC9P31274 DEFB113-201ENST00000398718 249 ntAPPRIS P1 TSL 1 (best) BASIC7.1□□□□□ -1.27
HOXC9P31274 NUDT19P3-201ENST00000404698 555 ntBASIC7.1□□□□□ -1.27
HOXC9P31274 LINC02476-202ENST00000431071 559 ntTSL 4 BASIC7.1□□□□□ -1.27
HOXC9P31274 SLC8A1-AS1-205ENST00000435515 497 ntTSL 3 BASIC7.1□□□□□ -1.27
HOXC9P31274 AL035416.1-201ENST00000443012 767 ntTSL 2 BASIC7.1□□□□□ -1.27
HOXC9P31274 FLJ27354-202ENST00000443562 770 ntTSL 3 BASIC7.1□□□□□ -1.27
HOXC9P31274 RPS3AP41-201ENST00000462701 778 ntBASIC7.1□□□□□ -1.27
HOXC9P31274 MORC1-AS1-201ENST00000480826 564 ntTSL 2 BASIC7.1□□□□□ -1.27
HOXC9P31274 AC093909.2-201ENST00000505178 437 ntTSL 3 BASIC7.1□□□□□ -1.27
HOXC9P31274 ST13P12-201ENST00000508958 1094 ntBASIC7.1□□□□□ -1.27
HOXC9P31274 AC011389.1-201ENST00000509170 594 ntTSL 4 BASIC7.1□□□□□ -1.27
HOXC9P31274 GTF2F2P1-201ENST00000511083 675 ntBASIC7.1□□□□□ -1.27
HOXC9P31274 AP001574.1-201ENST00000519566 546 ntTSL 4 BASIC7.1□□□□□ -1.27
HOXC9P31274 RNASE9-204ENST00000553541 1136 ntAPPRIS P3 TSL 1 (best) BASIC7.1□□□□□ -1.27
HOXC9P31274 ETFRF1-202ENST00000553788 708 ntTSL 3 BASIC7.1□□□□□ -1.27
HOXC9P31274 RNASE9-206ENST00000554964 1101 ntAPPRIS P3 TSL 1 (best) BASIC7.1□□□□□ -1.27
HOXC9P31274 HNRNPCP1-201ENST00000556181 766 ntBASIC7.1□□□□□ -1.27
HOXC9P31274 RNASE9-208ENST00000556208 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC7.1□□□□□ -1.27
HOXC9P31274 RNASE9-210ENST00000557209 1137 ntAPPRIS ALT2 TSL 1 (best) BASIC7.1□□□□□ -1.27
HOXC9P31274 AC024592.1-202ENST00000590441 341 ntTSL 3 BASIC7.1□□□□□ -1.27
HOXC9P31274 L34079.2-201ENST00000597119 561 ntTSL 3 BASIC7.1□□□□□ -1.27
HOXC9P31274 AC093799.2-201ENST00000610062 578 ntBASIC7.1□□□□□ -1.27
HOXC9P31274 AC092747.4-201ENST00000620519 1861 ntBASIC7.1□□□□□ -1.27
HOXC9P31274 MROH2B-203ENST00000506092 3745 ntTSL 2 BASIC7.1□□□□□ -1.27
HOXC9P31274 FCHO2-207ENST00000512348 2700 ntTSL 2 BASIC7.1□□□□□ -1.27
HOXC9P31274 TEX26-201ENST00000380473 1478 ntAPPRIS P1 TSL 1 (best) BASIC7.1□□□□□ -1.27
Retrieved 100 of 98,524 protein–RNA pairs in 102.6 ms