Protein–RNA interactions for Protein: Q9D1C8

Vps28, Vacuolar protein sorting-associated protein 28 homolog, mousemouse

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps28Q9D1C8 Tspoap1-202ENSMUST00000100644 7390 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
Vps28Q9D1C8 Aifm1-201ENSMUST00000037349 2237 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
Vps28Q9D1C8 Senp3-202ENSMUST00000066760 2219 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Vps28Q9D1C8 Fxyd6-201ENSMUST00000085939 1788 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Vps28Q9D1C8 Nelfb-201ENSMUST00000059849 2637 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Vps28Q9D1C8 Card10-203ENSMUST00000170584 3220 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
Vps28Q9D1C8 Stam2-202ENSMUST00000127316 1928 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Vps28Q9D1C8 Ccnd3-202ENSMUST00000171031 2113 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
Vps28Q9D1C8 Ttc32-203ENSMUST00000219488 768 ntTSL 3 BASIC17.28■□□□□ 0.36
Vps28Q9D1C8 Metrn-201ENSMUST00000002344 987 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
Vps28Q9D1C8 Lce1h-201ENSMUST00000051521 706 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Vps28Q9D1C8 Gm11748-201ENSMUST00000153825 1498 ntTSL 2 BASIC17.28■□□□□ 0.36
Vps28Q9D1C8 Casp6-201ENSMUST00000029626 1456 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Vps28Q9D1C8 Shroom3-204ENSMUST00000168878 5630 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Vps28Q9D1C8 Yipf2-204ENSMUST00000213809 1883 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Vps28Q9D1C8 Pi4k2b-201ENSMUST00000031081 3139 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
Vps28Q9D1C8 Atp8b1-201ENSMUST00000025482 6440 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Vps28Q9D1C8 Ddhd2-206ENSMUST00000211688 2265 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Vps28Q9D1C8 Nudt16-201ENSMUST00000035179 1631 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Vps28Q9D1C8 Cacna2d2-203ENSMUST00000164988 5542 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
Vps28Q9D1C8 Gm7008-201ENSMUST00000038121 1366 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Vps28Q9D1C8 Atf7-209ENSMUST00000184485 2523 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Vps28Q9D1C8 Nr1h2-213ENSMUST00000167197 1944 ntAPPRIS P3 TSL 5 BASIC17.27■□□□□ 0.36
Vps28Q9D1C8 Klhl31-201ENSMUST00000057781 6494 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Vps28Q9D1C8 Bmp8a-201ENSMUST00000040496 2405 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
Vps28Q9D1C8 Cadm1-204ENSMUST00000114548 4482 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
Vps28Q9D1C8 Disc1-208ENSMUST00000122389 1694 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
Vps28Q9D1C8 6430573F11Rik-202ENSMUST00000135373 2573 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
Vps28Q9D1C8 Gne-202ENSMUST00000102936 2920 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Vps28Q9D1C8 Gmcl1-202ENSMUST00000113679 960 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
Vps28Q9D1C8 Tm4sf19-201ENSMUST00000115149 1257 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Vps28Q9D1C8 Spsb2-202ENSMUST00000052727 1219 ntAPPRIS P1 TSL 3 BASIC17.27■□□□□ 0.36
Vps28Q9D1C8 Fam53a-201ENSMUST00000045329 2346 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.35
Vps28Q9D1C8 Fam57b-201ENSMUST00000079423 2328 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
Vps28Q9D1C8 Inpp4a-201ENSMUST00000027287 5691 ntAPPRIS P2 TSL 5 BASIC17.27■□□□□ 0.35
Vps28Q9D1C8 Lhfpl4-201ENSMUST00000162280 4762 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
Vps28Q9D1C8 Lhx6-203ENSMUST00000112963 3481 ntTSL 2 BASIC17.27■□□□□ 0.35
Vps28Q9D1C8 D1Ertd622e-204ENSMUST00000153115 3495 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
Vps28Q9D1C8 Ptges2-201ENSMUST00000028162 4978 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
Vps28Q9D1C8 Fam110a-204ENSMUST00000109865 1853 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.35
Vps28Q9D1C8 Hspa8-201ENSMUST00000015800 2394 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Vps28Q9D1C8 Epn1-201ENSMUST00000045277 2334 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Vps28Q9D1C8 Nadk2-202ENSMUST00000100789 3578 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
Vps28Q9D1C8 Ffar3-201ENSMUST00000094583 1625 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Vps28Q9D1C8 Gm16863-201ENSMUST00000181476 2431 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Vps28Q9D1C8 March3-202ENSMUST00000102912 1754 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Vps28Q9D1C8 4930526A20Rik-201ENSMUST00000134228 941 ntBASIC17.26■□□□□ 0.35
Vps28Q9D1C8 Gm6659-201ENSMUST00000174752 547 ntBASIC17.26■□□□□ 0.35
Vps28Q9D1C8 Mir1668-201ENSMUST00000184114 107 ntBASIC17.26■□□□□ 0.35
Vps28Q9D1C8 Hoxa6-201ENSMUST00000062829 874 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Vps28Q9D1C8 Fam92a-201ENSMUST00000087052 1292 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Vps28Q9D1C8 Usp6nl-202ENSMUST00000114937 7484 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Vps28Q9D1C8 Fam149b-216ENSMUST00000225942 2151 ntAPPRIS ALT2 BASIC17.26■□□□□ 0.35
Vps28Q9D1C8 Gpat3-203ENSMUST00000112887 3059 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Vps28Q9D1C8 Rab6b-201ENSMUST00000035155 5007 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Vps28Q9D1C8 Rpf1-203ENSMUST00000199079 1978 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Vps28Q9D1C8 Mpped2-202ENSMUST00000111063 2848 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Vps28Q9D1C8 Tle3-211ENSMUST00000161689 2836 ntTSL 2 BASIC17.25■□□□□ 0.35
Vps28Q9D1C8 Dscr3-201ENSMUST00000023615 2547 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Vps28Q9D1C8 Abi1-215ENSMUST00000178908 2239 ntAPPRIS ALT1 TSL 5 BASIC17.25■□□□□ 0.35
Vps28Q9D1C8 Bub3-201ENSMUST00000084502 2218 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Vps28Q9D1C8 Stox1-202ENSMUST00000133371 3510 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Vps28Q9D1C8 Auh-202ENSMUST00000110031 3235 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Vps28Q9D1C8 Gm21974-201ENSMUST00000126662 2037 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
Vps28Q9D1C8 Ap2a2-201ENSMUST00000003038 4646 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Vps28Q9D1C8 Cux1-206ENSMUST00000176172 4882 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Vps28Q9D1C8 Gm15582-201ENSMUST00000132849 1581 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Vps28Q9D1C8 Dcps-202ENSMUST00000119847 1445 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Vps28Q9D1C8 Bpnt1-202ENSMUST00000110965 1046 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Vps28Q9D1C8 Sap18-203ENSMUST00000111269 459 ntTSL 2 BASIC17.25■□□□□ 0.35
Vps28Q9D1C8 Gpha2-202ENSMUST00000113526 762 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
Vps28Q9D1C8 Gm20033-201ENSMUST00000180470 572 ntTSL 3 BASIC17.25■□□□□ 0.35
Vps28Q9D1C8 Gm27389-201ENSMUST00000183622 195 ntBASIC17.25■□□□□ 0.35
Vps28Q9D1C8 Efcab11-207ENSMUST00000223114 1122 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
Vps28Q9D1C8 Gpha2-201ENSMUST00000025698 609 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Vps28Q9D1C8 Cct8-201ENSMUST00000026704 2394 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Vps28Q9D1C8 Eif4g3-202ENSMUST00000084214 6139 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Vps28Q9D1C8 St3gal3-203ENSMUST00000106410 2225 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Vps28Q9D1C8 Scarf2-201ENSMUST00000012161 3302 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Vps28Q9D1C8 Pigl-201ENSMUST00000014389 2174 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Vps28Q9D1C8 Amacr-201ENSMUST00000070877 2577 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Vps28Q9D1C8 Thsd7a-202ENSMUST00000119581 5678 ntAPPRIS P2 TSL 5 BASIC17.25■□□□□ 0.35
Vps28Q9D1C8 Usp47-201ENSMUST00000106653 5540 ntAPPRIS P3 TSL 5 BASIC17.25■□□□□ 0.35
Vps28Q9D1C8 Ppp2r5d-201ENSMUST00000002839 2926 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Vps28Q9D1C8 Nagk-203ENSMUST00000113851 1323 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Vps28Q9D1C8 Gm20460-201ENSMUST00000168709 1572 ntTSL 5 BASIC17.24■□□□□ 0.35
Vps28Q9D1C8 Podnl1-201ENSMUST00000093380 2090 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Vps28Q9D1C8 A530084C06Rik-201ENSMUST00000170573 3200 ntAPPRIS P1 BASIC17.24■□□□□ 0.35
Vps28Q9D1C8 Tlcd2-202ENSMUST00000108435 1112 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Vps28Q9D1C8 Lamtor5-201ENSMUST00000145735 881 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Vps28Q9D1C8 D230030E09Rik-201ENSMUST00000222459 884 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Vps28Q9D1C8 Tmem205-201ENSMUST00000046831 785 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Vps28Q9D1C8 Krtcap3-201ENSMUST00000054829 904 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Vps28Q9D1C8 Olfr317-201ENSMUST00000075607 1128 ntAPPRIS P1 BASIC17.24■□□□□ 0.35
Vps28Q9D1C8 Farsa-202ENSMUST00000109754 1795 ntAPPRIS ALT1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Vps28Q9D1C8 Esyt2-205ENSMUST00000220816 4287 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Vps28Q9D1C8 Vrk2-201ENSMUST00000078362 1889 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Vps28Q9D1C8 Ern1-204ENSMUST00000106801 1957 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Vps28Q9D1C8 Zfand5-201ENSMUST00000025659 2834 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Vps28Q9D1C8 Zswim8-201ENSMUST00000022358 6073 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Retrieved 100 of 76,532 protein–RNA pairs in 22.6 ms