Protein–RNA interactions for Protein: Q9CR29

Ccdc43, Coiled-coil domain-containing protein 43, mousemouse

Known RBP Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc43Q9CR29 Nr1h2-201ENSMUST00000073488 1999 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
Ccdc43Q9CR29 Dcps-202ENSMUST00000119847 1445 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Ccdc43Q9CR29 Sharpin-201ENSMUST00000023211 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Ccdc43Q9CR29 Neurl1a-202ENSMUST00000111808 4157 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
Ccdc43Q9CR29 Fmnl3-203ENSMUST00000120633 4290 ntAPPRIS ALT2 TSL 5 BASIC18.75■□□□□ 0.59
Ccdc43Q9CR29 Gm22240-201ENSMUST00000175225 82 ntBASIC18.75■□□□□ 0.59
Ccdc43Q9CR29 Gm37939-201ENSMUST00000192309 447 ntTSL 5 BASIC18.75■□□□□ 0.59
Ccdc43Q9CR29 Map7-205ENSMUST00000214231 675 ntTSL 3 BASIC18.75■□□□□ 0.59
Ccdc43Q9CR29 Fgf22-203ENSMUST00000219981 1070 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Ccdc43Q9CR29 Wasf2-201ENSMUST00000084241 5642 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Ccdc43Q9CR29 Sox1ot-201ENSMUST00000080795 5064 ntTSL 5 BASIC18.75■□□□□ 0.59
Ccdc43Q9CR29 Negr1-203ENSMUST00000106065 1953 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Ccdc43Q9CR29 Krt6a-201ENSMUST00000023788 2256 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Ccdc43Q9CR29 Tmx1-201ENSMUST00000021471 2795 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Ccdc43Q9CR29 Atg4c-201ENSMUST00000030279 3178 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Ccdc43Q9CR29 BC029722-201ENSMUST00000124586 1615 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Ccdc43Q9CR29 Serac1-201ENSMUST00000024570 2033 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
Ccdc43Q9CR29 Fam57b-201ENSMUST00000079423 2328 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Ccdc43Q9CR29 Paqr9-201ENSMUST00000079597 8367 ntAPPRIS P1 BASIC18.74■□□□□ 0.59
Ccdc43Q9CR29 Col13a1-204ENSMUST00000105453 2935 ntTSL 2 BASIC18.74■□□□□ 0.59
Ccdc43Q9CR29 Anks1-201ENSMUST00000025058 6844 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
Ccdc43Q9CR29 Gm16499-203ENSMUST00000204633 2177 ntBASIC18.74■□□□□ 0.59
Ccdc43Q9CR29 Crct1-202ENSMUST00000107301 460 ntAPPRIS P1 TSL 2 BASIC18.74■□□□□ 0.59
Ccdc43Q9CR29 Tlcd1-203ENSMUST00000108338 714 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Ccdc43Q9CR29 Gm2990-201ENSMUST00000180662 1118 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Ccdc43Q9CR29 Spcs1-201ENSMUST00000186131 1005 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Ccdc43Q9CR29 Gm34933-201ENSMUST00000203245 1067 ntTSL 5 BASIC18.74■□□□□ 0.59
Ccdc43Q9CR29 AC154649.1-201ENSMUST00000227392 384 ntBASIC18.74■□□□□ 0.59
Ccdc43Q9CR29 Cblb-201ENSMUST00000114471 6648 ntAPPRIS P2 TSL 1 (best) BASIC18.74■□□□□ 0.59
Ccdc43Q9CR29 Clcn3-203ENSMUST00000093490 5518 ntAPPRIS ALT1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Ccdc43Q9CR29 Gm10649-203ENSMUST00000148066 1812 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Ccdc43Q9CR29 B4galnt4-201ENSMUST00000048002 3556 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Ccdc43Q9CR29 Matk-202ENSMUST00000117488 1980 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
Ccdc43Q9CR29 2810425M01Rik-201ENSMUST00000180790 1850 ntTSL 5 BASIC18.73■□□□□ 0.59
Ccdc43Q9CR29 A430078I02Rik-202ENSMUST00000154066 2233 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Ccdc43Q9CR29 6330411D24Rik-201ENSMUST00000211105 1568 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Ccdc43Q9CR29 Josd2-206ENSMUST00000121922 684 ntTSL 5 BASIC18.73■□□□□ 0.59
Ccdc43Q9CR29 Ost4-201ENSMUST00000132034 576 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Ccdc43Q9CR29 Gm20695-202ENSMUST00000176233 1012 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
Ccdc43Q9CR29 Pusl1-201ENSMUST00000097737 1243 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
Ccdc43Q9CR29 Spon1-202ENSMUST00000084696 5201 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Ccdc43Q9CR29 Tbxas1-201ENSMUST00000003017 1990 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Ccdc43Q9CR29 Rala-201ENSMUST00000009003 2688 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Ccdc43Q9CR29 Ntng1-204ENSMUST00000106571 1446 ntTSL 5 BASIC18.73■□□□□ 0.59
Ccdc43Q9CR29 Ntng1-210ENSMUST00000138953 1443 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Ccdc43Q9CR29 Gtpbp3-208ENSMUST00000168847 2803 ntAPPRIS ALT2 TSL 5 BASIC18.73■□□□□ 0.59
Ccdc43Q9CR29 Plbd2-201ENSMUST00000031597 4208 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Ccdc43Q9CR29 Ociad2-202ENSMUST00000200776 2359 ntTSL 3 BASIC18.73■□□□□ 0.59
Ccdc43Q9CR29 Slc35f1-201ENSMUST00000105473 4941 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Ccdc43Q9CR29 Igsf8-201ENSMUST00000039506 2278 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Ccdc43Q9CR29 Cadm3-201ENSMUST00000005470 2518 ntTSL 5 BASIC18.72■□□□□ 0.59
Ccdc43Q9CR29 Lrrc47-205ENSMUST00000169622 3468 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
Ccdc43Q9CR29 Cdv3-207ENSMUST00000190226 3107 ntTSL 5 BASIC18.72■□□□□ 0.59
Ccdc43Q9CR29 Vopp1-201ENSMUST00000114297 2919 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Ccdc43Q9CR29 Adamts17-202ENSMUST00000107478 6416 ntAPPRIS ALT2 TSL 5 BASIC18.72■□□□□ 0.59
Ccdc43Q9CR29 Hnrnph1-201ENSMUST00000069304 2225 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Ccdc43Q9CR29 Atox1-201ENSMUST00000108857 541 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Ccdc43Q9CR29 Rint1-204ENSMUST00000117783 560 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Ccdc43Q9CR29 Gm24841-201ENSMUST00000158676 357 ntBASIC18.72■□□□□ 0.59
Ccdc43Q9CR29 Ccnd2-202ENSMUST00000201066 983 ntTSL 2 BASIC18.72■□□□□ 0.59
Ccdc43Q9CR29 Gm45894-202ENSMUST00000212728 1097 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Ccdc43Q9CR29 Erlin1-201ENSMUST00000071698 3228 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
Ccdc43Q9CR29 9430097D07Rik-201ENSMUST00000100190 1501 ntAPPRIS P1 BASIC18.72■□□□□ 0.59
Ccdc43Q9CR29 Ddn-201ENSMUST00000075444 3740 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Ccdc43Q9CR29 Tia1-203ENSMUST00000095754 1789 ntAPPRIS ALT1 TSL 5 BASIC18.72■□□□□ 0.59
Ccdc43Q9CR29 Zdhhc6-207ENSMUST00000224897 2168 ntAPPRIS P1 BASIC18.72■□□□□ 0.59
Ccdc43Q9CR29 Ralgapa2-211ENSMUST00000228797 8245 ntAPPRIS ALT2 BASIC18.72■□□□□ 0.59
Ccdc43Q9CR29 Abtb1-201ENSMUST00000032169 1845 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Ccdc43Q9CR29 Ubp1-202ENSMUST00000084885 3850 ntAPPRIS P4 TSL 5 BASIC18.72■□□□□ 0.59
Ccdc43Q9CR29 Klhl5-204ENSMUST00000204097 3149 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Ccdc43Q9CR29 Tead3-205ENSMUST00000154873 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
Ccdc43Q9CR29 Gpr180-201ENSMUST00000022728 1875 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Ccdc43Q9CR29 Prss33-201ENSMUST00000059906 1360 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Ccdc43Q9CR29 Stxbp6-201ENSMUST00000053768 4553 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
Ccdc43Q9CR29 Ccdc107-202ENSMUST00000107922 865 ntAPPRIS ALT2 TSL 2 BASIC18.71■□□□□ 0.59
Ccdc43Q9CR29 Gusb-202ENSMUST00000111307 932 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Ccdc43Q9CR29 Zfp629-207ENSMUST00000134446 670 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Ccdc43Q9CR29 Zmynd19-202ENSMUST00000148042 1103 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Ccdc43Q9CR29 Ppic-201ENSMUST00000025419 1286 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Ccdc43Q9CR29 Ccdc107-201ENSMUST00000030181 817 ntAPPRIS P2 TSL 1 (best) BASIC18.71■□□□□ 0.59
Ccdc43Q9CR29 Cck-201ENSMUST00000035120 691 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Ccdc43Q9CR29 Mfap2-201ENSMUST00000071977 1073 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Ccdc43Q9CR29 Lamc1-201ENSMUST00000027752 7622 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Ccdc43Q9CR29 Itgb4-201ENSMUST00000021107 6014 ntAPPRIS P2 TSL 5 BASIC18.71■□□□□ 0.59
Ccdc43Q9CR29 Ube2d3-202ENSMUST00000166033 2504 ntAPPRIS P2 TSL 1 (best) BASIC18.71■□□□□ 0.59
Ccdc43Q9CR29 Ctcf-201ENSMUST00000005841 3782 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Ccdc43Q9CR29 Gprc5c-203ENSMUST00000122967 1709 ntTSL 5 BASIC18.71■□□□□ 0.59
Ccdc43Q9CR29 Cerkl-205ENSMUST00000143974 1623 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.58
Ccdc43Q9CR29 Mcm9-201ENSMUST00000075540 4882 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
Ccdc43Q9CR29 Cwh43-201ENSMUST00000031040 2716 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Ccdc43Q9CR29 Asph-204ENSMUST00000084915 2884 ntTSL 5 BASIC18.7■□□□□ 0.58
Ccdc43Q9CR29 Endov-203ENSMUST00000106245 5126 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Ccdc43Q9CR29 Ern1-203ENSMUST00000106800 654 ntTSL 3 BASIC18.7■□□□□ 0.58
Ccdc43Q9CR29 Lzts2-203ENSMUST00000179108 2781 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Ccdc43Q9CR29 AC153881.1-201ENSMUST00000214448 284 ntBASIC18.7■□□□□ 0.58
Ccdc43Q9CR29 Arhgef33-211ENSMUST00000225658 473 ntBASIC18.7■□□□□ 0.58
Ccdc43Q9CR29 Ntpcr-201ENSMUST00000034313 1155 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Ccdc43Q9CR29 1700020N01Rik-201ENSMUST00000057341 1062 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Ccdc43Q9CR29 Cux1-212ENSMUST00000176778 5520 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
Ccdc43Q9CR29 Nrbp1-207ENSMUST00000202576 2221 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Retrieved 100 of 76,532 protein–RNA pairs in 26.8 ms