Protein–RNA interactions for Protein: Q8C7M3

Trim9, E3 ubiquitin-protein ligase TRIM9, mousemouse

Predictions only

Length 817 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim9Q8C7M3 Cmc1-201ENSMUST00000044220 1169 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Trim9Q8C7M3 Gzme-201ENSMUST00000089549 916 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Trim9Q8C7M3 Cadm3-201ENSMUST00000005470 2518 ntTSL 5 BASIC18.61■□□□□ 0.57
Trim9Q8C7M3 Pigz-201ENSMUST00000052174 2184 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Trim9Q8C7M3 Snap91-202ENSMUST00000074468 4336 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
Trim9Q8C7M3 Phtf1-201ENSMUST00000055425 3060 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Trim9Q8C7M3 Dnlz-201ENSMUST00000028295 2916 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Trim9Q8C7M3 Sufu-202ENSMUST00000111867 1747 ntAPPRIS ALT1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Trim9Q8C7M3 Gtpbp3-208ENSMUST00000168847 2803 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
Trim9Q8C7M3 Lrch3-211ENSMUST00000170899 2752 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
Trim9Q8C7M3 Lhx6-203ENSMUST00000112963 3481 ntTSL 2 BASIC18.6■□□□□ 0.57
Trim9Q8C7M3 Ptpre-201ENSMUST00000073961 5410 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
Trim9Q8C7M3 Mturn-203ENSMUST00000190641 5303 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Trim9Q8C7M3 Nptn-212ENSMUST00000177292 1390 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
Trim9Q8C7M3 Hmg20b-213ENSMUST00000167481 1321 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
Trim9Q8C7M3 Cdc14b-203ENSMUST00000109770 3052 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
Trim9Q8C7M3 Gssos2-201ENSMUST00000130859 727 ntTSL 3 BASIC18.6■□□□□ 0.57
Trim9Q8C7M3 Gtf3a-204ENSMUST00000146511 1298 ntAPPRIS P5 TSL 1 (best) BASIC18.6■□□□□ 0.57
Trim9Q8C7M3 Khdc3-204ENSMUST00000173734 1228 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
Trim9Q8C7M3 Muc2-203ENSMUST00000179227 399 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Trim9Q8C7M3 Lgals7-201ENSMUST00000081457 754 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Trim9Q8C7M3 Zbtb9-201ENSMUST00000120016 2798 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Trim9Q8C7M3 Gm15743-202ENSMUST00000182690 1901 ntBASIC18.6■□□□□ 0.57
Trim9Q8C7M3 Gm45203-201ENSMUST00000206384 1831 ntBASIC18.6■□□□□ 0.57
Trim9Q8C7M3 Rara-202ENSMUST00000107473 3238 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Trim9Q8C7M3 Syt9-201ENSMUST00000073459 3817 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Trim9Q8C7M3 Zbtb25-201ENSMUST00000167011 1681 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
Trim9Q8C7M3 Fhl2-201ENSMUST00000008280 1563 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Trim9Q8C7M3 1810013L24Rik-201ENSMUST00000023150 4066 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Trim9Q8C7M3 Ankrd29-201ENSMUST00000118525 3242 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Trim9Q8C7M3 Slc16a7-205ENSMUST00000210780 2562 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
Trim9Q8C7M3 Slc22a3-201ENSMUST00000024595 3501 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Trim9Q8C7M3 Cdca7-201ENSMUST00000102691 2424 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Trim9Q8C7M3 Brd3os-202ENSMUST00000209765 1898 ntAPPRIS P1 BASIC18.59■□□□□ 0.57
Trim9Q8C7M3 Atp6v1b2-201ENSMUST00000006435 2825 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Trim9Q8C7M3 Gm13559-201ENSMUST00000120476 863 ntBASIC18.59■□□□□ 0.57
Trim9Q8C7M3 Pabpc1l2b-ps-201ENSMUST00000124538 690 ntBASIC18.59■□□□□ 0.57
Trim9Q8C7M3 Fgf8-202ENSMUST00000026241 1168 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Trim9Q8C7M3 Pou2f2-202ENSMUST00000108413 1599 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Trim9Q8C7M3 Matr3-214ENSMUST00000190029 2845 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
Trim9Q8C7M3 Lzts2-201ENSMUST00000039016 2825 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Trim9Q8C7M3 Mta1-201ENSMUST00000009099 2826 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
Trim9Q8C7M3 Zkscan6-202ENSMUST00000071465 2270 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
Trim9Q8C7M3 Runx1t1-201ENSMUST00000006761 5783 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.57
Trim9Q8C7M3 Taf6l-213ENSMUST00000189739 1794 ntTSL 5 BASIC18.58■□□□□ 0.57
Trim9Q8C7M3 Spock1-201ENSMUST00000172326 1320 ntAPPRIS P3 TSL 5 BASIC18.58■□□□□ 0.57
Trim9Q8C7M3 Pdgfa-202ENSMUST00000076095 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
Trim9Q8C7M3 H2afz-207ENSMUST00000174561 810 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
Trim9Q8C7M3 Gm10252-201ENSMUST00000209541 832 ntBASIC18.58■□□□□ 0.56
Trim9Q8C7M3 Thrsp-201ENSMUST00000043077 1277 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Trim9Q8C7M3 Cpeb2-204ENSMUST00000166713 6846 ntAPPRIS ALT2 TSL 5 BASIC18.58■□□□□ 0.56
Trim9Q8C7M3 Clstn2-201ENSMUST00000035027 4365 ntAPPRIS P2 TSL 1 (best) BASIC18.58■□□□□ 0.56
Trim9Q8C7M3 Ube2d3-202ENSMUST00000166033 2504 ntAPPRIS P2 TSL 1 (best) BASIC18.58■□□□□ 0.56
Trim9Q8C7M3 Tmem260-209ENSMUST00000226422 6333 ntAPPRIS ALT2 BASIC18.57■□□□□ 0.56
Trim9Q8C7M3 Gm9821-201ENSMUST00000178895 1953 ntAPPRIS P1 BASIC18.57■□□□□ 0.56
Trim9Q8C7M3 Snx16-201ENSMUST00000029047 2288 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
Trim9Q8C7M3 Ascl2-201ENSMUST00000009392 1605 ntAPPRIS P2 TSL 1 (best) BASIC18.57■□□□□ 0.56
Trim9Q8C7M3 4930455H04Rik-201ENSMUST00000117592 1341 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Trim9Q8C7M3 Sbf1-201ENSMUST00000123791 6190 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
Trim9Q8C7M3 Gm20460-201ENSMUST00000168709 1572 ntTSL 5 BASIC18.57■□□□□ 0.56
Trim9Q8C7M3 B4galnt4-201ENSMUST00000048002 3556 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Trim9Q8C7M3 Hmga1-206ENSMUST00000119486 1003 ntAPPRIS P3 TSL 2 BASIC18.57■□□□□ 0.56
Trim9Q8C7M3 Lamtor5-201ENSMUST00000145735 881 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
Trim9Q8C7M3 Arntl-204ENSMUST00000210238 2976 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
Trim9Q8C7M3 Mvb12a-201ENSMUST00000034272 1062 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Trim9Q8C7M3 Chsy3-201ENSMUST00000080721 2931 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Trim9Q8C7M3 Saysd1-201ENSMUST00000059666 2315 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Trim9Q8C7M3 Stxbp3-205ENSMUST00000138552 1789 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
Trim9Q8C7M3 Ubr5-201ENSMUST00000110336 9242 ntTSL 5 BASIC18.57■□□□□ 0.56
Trim9Q8C7M3 Wdr13-202ENSMUST00000115623 1749 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
Trim9Q8C7M3 Capn1-202ENSMUST00000164843 3048 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
Trim9Q8C7M3 Cdv3-202ENSMUST00000072249 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
Trim9Q8C7M3 Atad2b-201ENSMUST00000045664 8035 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
Trim9Q8C7M3 Ntn1-201ENSMUST00000021284 5738 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
Trim9Q8C7M3 Sf1-202ENSMUST00000113487 2649 ntAPPRIS ALT1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Trim9Q8C7M3 Atg5-201ENSMUST00000039286 2352 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Trim9Q8C7M3 Gpr20-201ENSMUST00000064166 2144 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Trim9Q8C7M3 Cdk19-201ENSMUST00000044672 5807 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Trim9Q8C7M3 Pcdhac2-201ENSMUST00000047479 5888 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Trim9Q8C7M3 Asic2-201ENSMUST00000021045 3436 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Trim9Q8C7M3 Cobll1-205ENSMUST00000112431 5024 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
Trim9Q8C7M3 Gm20403-201ENSMUST00000173803 372 ntAPPRIS P1 BASIC18.56■□□□□ 0.56
Trim9Q8C7M3 Gm2274-201ENSMUST00000184539 609 ntBASIC18.56■□□□□ 0.56
Trim9Q8C7M3 Map3k7cl-201ENSMUST00000026700 1652 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Trim9Q8C7M3 Mybl2-201ENSMUST00000018005 3651 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Trim9Q8C7M3 Ccdc184-201ENSMUST00000031914 2329 ntAPPRIS P1 BASIC18.56■□□□□ 0.56
Trim9Q8C7M3 Gm7854-202ENSMUST00000187409 1433 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Trim9Q8C7M3 Klhdc8b-214ENSMUST00000195435 1612 ntTSL 5 BASIC18.56■□□□□ 0.56
Trim9Q8C7M3 L3hypdh-201ENSMUST00000019862 1831 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Trim9Q8C7M3 Plekhh3-201ENSMUST00000043397 3056 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
Trim9Q8C7M3 Gm9954-202ENSMUST00000198686 4725 ntBASIC18.55■□□□□ 0.56
Trim9Q8C7M3 Hmgb3-202ENSMUST00000072699 1571 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Trim9Q8C7M3 Smim10l1-201ENSMUST00000100864 2842 ntAPPRIS P1 BASIC18.55■□□□□ 0.56
Trim9Q8C7M3 Mettl27-204ENSMUST00000111219 1790 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Trim9Q8C7M3 Lrrfip1-212ENSMUST00000189617 2155 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
Trim9Q8C7M3 Gm17509-201ENSMUST00000165680 2375 ntAPPRIS P1 BASIC18.55■□□□□ 0.56
Trim9Q8C7M3 Trmo-201ENSMUST00000030015 1527 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
Trim9Q8C7M3 Atp5b-201ENSMUST00000026459 1916 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Trim9Q8C7M3 Echdc2-203ENSMUST00000116307 893 ntTSL 5 BASIC18.55■□□□□ 0.56
Trim9Q8C7M3 Gm3264-202ENSMUST00000166776 882 ntAPPRIS ALT2 TSL 5 BASIC18.55■□□□□ 0.56
Retrieved 100 of 76,532 protein–RNA pairs in 29.9 ms