Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Trim67-201ENSMUST00000041106 5694 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Trim56Q80VI1 Nxt1-202ENSMUST00000109961 1116 ntAPPRIS P1 TSL 2 BASIC19.89■□□□□ 0.77
Trim56Q80VI1 Nrl-202ENSMUST00000111404 2422 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Trim56Q80VI1 Grk6-201ENSMUST00000001115 2994 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
Trim56Q80VI1 Tacc3-203ENSMUST00000114426 2187 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.77
Trim56Q80VI1 Tulp1-202ENSMUST00000114794 1738 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
Trim56Q80VI1 4930455H04Rik-201ENSMUST00000117592 1341 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Trim56Q80VI1 F830208F22Rik-202ENSMUST00000143732 2891 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
Trim56Q80VI1 Mdm1-204ENSMUST00000169817 2022 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
Trim56Q80VI1 Gm26627-201ENSMUST00000181540 1487 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
Trim56Q80VI1 Cacng6-202ENSMUST00000183200 1977 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Trim56Q80VI1 Gm8797-201ENSMUST00000192045 490 ntAPPRIS P1 BASIC19.89■□□□□ 0.77
Trim56Q80VI1 Qprt-201ENSMUST00000032912 2050 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Trim56Q80VI1 Grcc10-201ENSMUST00000004389 863 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Trim56Q80VI1 Nxt1-201ENSMUST00000047177 956 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Trim56Q80VI1 Krt81-201ENSMUST00000061185 1857 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Trim56Q80VI1 2310039H08Rik-201ENSMUST00000071430 773 ntAPPRIS P1 BASIC19.89■□□□□ 0.77
Trim56Q80VI1 Fgf9-202ENSMUST00000074654 1198 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
Trim56Q80VI1 Nr1d2-201ENSMUST00000090543 4663 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Trim56Q80VI1 Nfib-204ENSMUST00000107246 3075 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
Trim56Q80VI1 Col13a1-204ENSMUST00000105453 2935 ntTSL 2 BASIC19.89■□□□□ 0.77
Trim56Q80VI1 Tmem163-203ENSMUST00000160616 2657 ntAPPRIS P1 TSL 2 BASIC19.89■□□□□ 0.77
Trim56Q80VI1 Zfp648-201ENSMUST00000086195 1892 ntAPPRIS P1 TSL 3 BASIC19.88■□□□□ 0.77
Trim56Q80VI1 Timm44-201ENSMUST00000003029 1790 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Trim56Q80VI1 Spdef-205ENSMUST00000167489 1708 ntAPPRIS P1 TSL 5 BASIC19.88■□□□□ 0.77
Trim56Q80VI1 Gtf2h4-201ENSMUST00000001565 1679 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Trim56Q80VI1 Trpc4ap-201ENSMUST00000041059 3204 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
Trim56Q80VI1 Vkorc1l1-203ENSMUST00000201855 4809 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
Trim56Q80VI1 Ero1l-201ENSMUST00000022378 4418 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Trim56Q80VI1 Gm11336-201ENSMUST00000118168 334 ntBASIC19.88■□□□□ 0.77
Trim56Q80VI1 Ramp2-202ENSMUST00000122006 899 ntTSL 2 BASIC19.88■□□□□ 0.77
Trim56Q80VI1 Gm11860-201ENSMUST00000122346 1010 ntBASIC19.88■□□□□ 0.77
Trim56Q80VI1 Zfp629-206ENSMUST00000132524 215 ntTSL 5 BASIC19.88■□□□□ 0.77
Trim56Q80VI1 4930505N22Rik-201ENSMUST00000181820 945 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
Trim56Q80VI1 Gm44450-201ENSMUST00000199528 114 ntBASIC19.88■□□□□ 0.77
Trim56Q80VI1 Vkorc1-203ENSMUST00000206053 606 ntTSL 3 BASIC19.88■□□□□ 0.77
Trim56Q80VI1 Pgpep1-208ENSMUST00000211715 676 ntTSL 3 BASIC19.88■□□□□ 0.77
Trim56Q80VI1 AC130671.1-201ENSMUST00000227384 1237 ntBASIC19.88■□□□□ 0.77
Trim56Q80VI1 Satb1-211ENSMUST00000152830 5993 ntAPPRIS P2 TSL 2 BASIC19.88■□□□□ 0.77
Trim56Q80VI1 Gm16401-202ENSMUST00000197463 2074 ntBASIC19.88■□□□□ 0.77
Trim56Q80VI1 Armc10-202ENSMUST00000095495 2700 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
Trim56Q80VI1 Eefsec-201ENSMUST00000165242 2679 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Trim56Q80VI1 Cdca7-201ENSMUST00000102691 2424 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Trim56Q80VI1 Nfe2l1-202ENSMUST00000107657 3869 ntAPPRIS P3 TSL 5 BASIC19.87■□□□□ 0.77
Trim56Q80VI1 Nphp3-201ENSMUST00000035167 5899 ntAPPRIS P2 TSL 1 (best) BASIC19.87■□□□□ 0.77
Trim56Q80VI1 Hnrnpul2-201ENSMUST00000096753 5726 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Trim56Q80VI1 Snrpd2-201ENSMUST00000049294 1420 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Trim56Q80VI1 Gapvd1-201ENSMUST00000028224 5695 ntAPPRIS P2 TSL 1 (best) BASIC19.87■□□□□ 0.77
Trim56Q80VI1 Casp3-204ENSMUST00000211115 2601 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Trim56Q80VI1 Zbtb22-201ENSMUST00000053429 2611 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Trim56Q80VI1 Gm5587-201ENSMUST00000206270 674 ntBASIC19.87■□□□□ 0.77
Trim56Q80VI1 Pagr1a-203ENSMUST00000206416 558 ntTSL 3 BASIC19.87■□□□□ 0.77
Trim56Q80VI1 Pfdn6-201ENSMUST00000025163 807 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Trim56Q80VI1 Rln3-201ENSMUST00000061923 634 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Trim56Q80VI1 C530025M09Rik-201ENSMUST00000099264 690 ntAPPRIS P1 BASIC19.87■□□□□ 0.77
Trim56Q80VI1 Cpox-201ENSMUST00000060077 3186 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Trim56Q80VI1 Pacs2-202ENSMUST00000220541 3101 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
Trim56Q80VI1 Parg-208ENSMUST00000170840 2894 ntAPPRIS ALT2 TSL 5 BASIC19.87■□□□□ 0.77
Trim56Q80VI1 Tyk2-205ENSMUST00000214864 1662 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
Trim56Q80VI1 Iqcd-202ENSMUST00000094391 1673 ntAPPRIS P2 TSL 1 (best) BASIC19.87■□□□□ 0.77
Trim56Q80VI1 Zpbp2-203ENSMUST00000107509 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
Trim56Q80VI1 Gm9917-202ENSMUST00000181099 1499 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
Trim56Q80VI1 Otud5-201ENSMUST00000033494 4259 ntAPPRIS P3 TSL 1 (best) BASIC19.86■□□□□ 0.77
Trim56Q80VI1 Irak1-205ENSMUST00000114353 1896 ntAPPRIS ALT2 TSL 5 BASIC19.86■□□□□ 0.77
Trim56Q80VI1 Ager-201ENSMUST00000015596 1370 ntAPPRIS P3 TSL 1 (best) BASIC19.86■□□□□ 0.77
Trim56Q80VI1 Sort1-203ENSMUST00000135636 6836 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
Trim56Q80VI1 Zfp655-206ENSMUST00000200039 1765 ntAPPRIS ALT1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Trim56Q80VI1 Nr1h3-202ENSMUST00000111354 1738 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Trim56Q80VI1 Surf1-201ENSMUST00000015934 1173 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Trim56Q80VI1 BC048679-203ENSMUST00000207871 567 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
Trim56Q80VI1 Papola-203ENSMUST00000163473 2544 ntTSL 5 BASIC19.86■□□□□ 0.77
Trim56Q80VI1 Dcun1d1-201ENSMUST00000108182 4980 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Trim56Q80VI1 Tdrd12-201ENSMUST00000032701 1620 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
Trim56Q80VI1 Atp6v1b2-201ENSMUST00000006435 2825 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Trim56Q80VI1 Bud23-202ENSMUST00000085984 1516 ntAPPRIS P2 TSL 1 (best) BASIC19.86■□□□□ 0.77
Trim56Q80VI1 Gm19439-201ENSMUST00000198195 2273 ntBASIC19.86■□□□□ 0.77
Trim56Q80VI1 Sertad4-204ENSMUST00000155579 3350 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Trim56Q80VI1 Cul4a-201ENSMUST00000016680 3728 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Trim56Q80VI1 Gfra2-202ENSMUST00000227633 1480 ntBASIC19.86■□□□□ 0.77
Trim56Q80VI1 Stxbp5-209ENSMUST00000141722 4702 ntAPPRIS P2 TSL 5 BASIC19.85■□□□□ 0.77
Trim56Q80VI1 Auh-201ENSMUST00000021913 1320 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Trim56Q80VI1 Psen2-205ENSMUST00000111108 1997 ntAPPRIS P2 TSL 1 (best) BASIC19.85■□□□□ 0.77
Trim56Q80VI1 Pex6-201ENSMUST00000002840 3200 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Trim56Q80VI1 Trim71-201ENSMUST00000111816 9332 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Trim56Q80VI1 Taco1os-201ENSMUST00000140736 644 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
Trim56Q80VI1 Gm13025-201ENSMUST00000141469 1163 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
Trim56Q80VI1 Has3-202ENSMUST00000175987 1154 ntTSL 5 BASIC19.85■□□□□ 0.77
Trim56Q80VI1 Gm18115-201ENSMUST00000221209 621 ntBASIC19.85■□□□□ 0.77
Trim56Q80VI1 Mrpl14-201ENSMUST00000024734 645 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Trim56Q80VI1 Inmt-201ENSMUST00000003569 1077 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Trim56Q80VI1 Gpr161-202ENSMUST00000178700 1827 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
Trim56Q80VI1 Matn4-201ENSMUST00000103103 2304 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Trim56Q80VI1 Gm26548-201ENSMUST00000181165 2029 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
Trim56Q80VI1 Camsap3-206ENSMUST00000207533 2584 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
Trim56Q80VI1 Uri1-201ENSMUST00000085513 3441 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Trim56Q80VI1 Rpp25-201ENSMUST00000080514 1423 ntAPPRIS P1 BASIC19.85■□□□□ 0.77
Trim56Q80VI1 Coq8b-202ENSMUST00000108378 2276 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Trim56Q80VI1 Klc1-202ENSMUST00000118471 2272 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
Trim56Q80VI1 Rcc1-201ENSMUST00000030726 2278 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
Trim56Q80VI1 Gsx2-201ENSMUST00000040477 1665 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Retrieved 100 of 76,532 protein–RNA pairs in 52.7 ms