Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Sct-201ENSMUST00000046156 534 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Sh3rf1Q69ZI1 Myoz1-201ENSMUST00000090469 1289 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Sh3rf1Q69ZI1 Spef1-201ENSMUST00000028801 2328 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Sh3rf1Q69ZI1 Iqsec2-202ENSMUST00000112604 5967 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Sh3rf1Q69ZI1 Brd3os-202ENSMUST00000209765 1898 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
Sh3rf1Q69ZI1 Enah-202ENSMUST00000111024 3572 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
Sh3rf1Q69ZI1 Espn-204ENSMUST00000080042 1402 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Sh3rf1Q69ZI1 Rwdd2b-201ENSMUST00000039101 2009 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Sh3rf1Q69ZI1 Nfkbid-201ENSMUST00000046177 2039 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Sh3rf1Q69ZI1 Csnk2a2-203ENSMUST00000212214 6779 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Sh3rf1Q69ZI1 Siglecf-202ENSMUST00000121494 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Sh3rf1Q69ZI1 Samd8-201ENSMUST00000022292 1574 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Sh3rf1Q69ZI1 Thegl-202ENSMUST00000117880 1641 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Sh3rf1Q69ZI1 Camsap2-203ENSMUST00000192314 4916 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Sh3rf1Q69ZI1 2210016F16Rik-201ENSMUST00000022032 3051 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Sh3rf1Q69ZI1 Gnao1-207ENSMUST00000138659 5526 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Sh3rf1Q69ZI1 Tnfsf14-201ENSMUST00000005976 1859 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Sh3rf1Q69ZI1 Nipsnap1-201ENSMUST00000038570 1926 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Sh3rf1Q69ZI1 Vegfa-201ENSMUST00000024747 2765 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Sh3rf1Q69ZI1 Gm26709-202ENSMUST00000223049 819 ntTSL 5 BASIC17.1■□□□□ 0.33
Sh3rf1Q69ZI1 Xpa-201ENSMUST00000030013 955 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Sh3rf1Q69ZI1 Grhpr-201ENSMUST00000045078 1280 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Sh3rf1Q69ZI1 Pcdh7-201ENSMUST00000068110 5611 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
Sh3rf1Q69ZI1 Fbxo9-202ENSMUST00000085311 2155 ntAPPRIS ALT1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Sh3rf1Q69ZI1 Ergic3-202ENSMUST00000088650 1349 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Sh3rf1Q69ZI1 Gapvd1-203ENSMUST00000113099 5758 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
Sh3rf1Q69ZI1 Relb-201ENSMUST00000049912 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Sh3rf1Q69ZI1 Neurl1b-201ENSMUST00000053020 6195 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Sh3rf1Q69ZI1 Gm43272-201ENSMUST00000200599 1584 ntBASIC17.1■□□□□ 0.33
Sh3rf1Q69ZI1 Fbrsl1-201ENSMUST00000056124 2700 ntTSL 2 BASIC17.1■□□□□ 0.33
Sh3rf1Q69ZI1 E130307A14Rik-213ENSMUST00000155482 2803 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Sh3rf1Q69ZI1 Slc5a10-203ENSMUST00000148584 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Sh3rf1Q69ZI1 Hace1-201ENSMUST00000037044 3785 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Sh3rf1Q69ZI1 Nptx2-201ENSMUST00000071782 2536 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Sh3rf1Q69ZI1 Plppr5-202ENSMUST00000106473 4294 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Sh3rf1Q69ZI1 Mier2-203ENSMUST00000165028 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Sh3rf1Q69ZI1 Pid1-201ENSMUST00000168574 2664 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Sh3rf1Q69ZI1 Gm13327-201ENSMUST00000133391 2741 ntTSL 5 BASIC17.09■□□□□ 0.33
Sh3rf1Q69ZI1 Nkx2-2-203ENSMUST00000109970 1053 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Sh3rf1Q69ZI1 2210408F21Rik-211ENSMUST00000151800 750 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Sh3rf1Q69ZI1 Ccl27a-219ENSMUST00000173865 657 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Sh3rf1Q69ZI1 Gm26643-201ENSMUST00000180854 1274 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Sh3rf1Q69ZI1 Gm16042-201ENSMUST00000204813 1247 ntBASIC17.09■□□□□ 0.33
Sh3rf1Q69ZI1 Arhgef4-208ENSMUST00000211073 171 ntBASIC17.09■□□□□ 0.33
Sh3rf1Q69ZI1 Tekt1-203ENSMUST00000108503 1397 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Sh3rf1Q69ZI1 Dusp12-201ENSMUST00000027970 1374 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Sh3rf1Q69ZI1 Ankdd1a-201ENSMUST00000061766 1443 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
Sh3rf1Q69ZI1 Hapln2-201ENSMUST00000005014 1711 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Sh3rf1Q69ZI1 Zscan25-201ENSMUST00000094116 1796 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Sh3rf1Q69ZI1 Prelid3a-201ENSMUST00000025411 2167 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Sh3rf1Q69ZI1 Agtr1a-201ENSMUST00000066412 2199 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Sh3rf1Q69ZI1 Map2k5-201ENSMUST00000034920 2310 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Sh3rf1Q69ZI1 Neu1-201ENSMUST00000007253 2474 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Sh3rf1Q69ZI1 Dtx2-201ENSMUST00000005072 2562 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
Sh3rf1Q69ZI1 Nepro-201ENSMUST00000048788 2866 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Sh3rf1Q69ZI1 Lca5l-202ENSMUST00000113804 3162 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Sh3rf1Q69ZI1 Fam171a1-203ENSMUST00000091505 3449 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Sh3rf1Q69ZI1 Seh1l-201ENSMUST00000025421 3516 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Sh3rf1Q69ZI1 Kif7-202ENSMUST00000178048 4524 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.33
Sh3rf1Q69ZI1 Rhobtb1-202ENSMUST00000067908 4422 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Sh3rf1Q69ZI1 Tapt1-201ENSMUST00000055128 3513 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.33
Sh3rf1Q69ZI1 Anapc5-201ENSMUST00000086216 2760 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.33
Sh3rf1Q69ZI1 Dph1-201ENSMUST00000044949 2139 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Sh3rf1Q69ZI1 Gpr161-202ENSMUST00000178700 1827 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.33
Sh3rf1Q69ZI1 Sept4-205ENSMUST00000107962 1678 ntAPPRIS ALT1 TSL 5 BASIC17.08■□□□□ 0.32
Sh3rf1Q69ZI1 Proc-201ENSMUST00000171765 1566 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.32
Sh3rf1Q69ZI1 Ptges3-202ENSMUST00000084771 1559 ntTSL 5 BASIC17.08■□□□□ 0.32
Sh3rf1Q69ZI1 Taok3-203ENSMUST00000111978 4467 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Sh3rf1Q69ZI1 AC108858.1-201ENSMUST00000228461 1498 ntBASIC17.08■□□□□ 0.32
Sh3rf1Q69ZI1 AC124581.1-201ENSMUST00000225416 1399 ntBASIC17.08■□□□□ 0.32
Sh3rf1Q69ZI1 Nudt22-203ENSMUST00000180765 1073 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.32
Sh3rf1Q69ZI1 Gm38285-201ENSMUST00000192928 922 ntBASIC17.08■□□□□ 0.32
Sh3rf1Q69ZI1 Gnb5-201ENSMUST00000076889 1188 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Sh3rf1Q69ZI1 Pitpnm2-210ENSMUST00000162812 6952 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.32
Sh3rf1Q69ZI1 Ppm1h-206ENSMUST00000161487 2931 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Sh3rf1Q69ZI1 Gch1-201ENSMUST00000089959 2775 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Sh3rf1Q69ZI1 Lrp8-201ENSMUST00000030356 4555 ntAPPRIS P5 TSL 5 BASIC17.08■□□□□ 0.32
Sh3rf1Q69ZI1 Mpig6b-201ENSMUST00000097337 2252 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Sh3rf1Q69ZI1 Hap1-201ENSMUST00000103124 2120 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.32
Sh3rf1Q69ZI1 Ptgis-201ENSMUST00000018113 2107 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Sh3rf1Q69ZI1 Ube2j2-201ENSMUST00000024056 3483 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Sh3rf1Q69ZI1 Stambpl1-201ENSMUST00000054956 2024 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Sh3rf1Q69ZI1 Psip1-201ENSMUST00000030207 3251 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Sh3rf1Q69ZI1 Gm11620-201ENSMUST00000118770 1845 ntBASIC17.07■□□□□ 0.32
Sh3rf1Q69ZI1 Ddhd1-201ENSMUST00000051310 5012 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
Sh3rf1Q69ZI1 Gm20517-202ENSMUST00000132397 4807 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Sh3rf1Q69ZI1 Arntl-203ENSMUST00000210074 2554 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Sh3rf1Q69ZI1 Gm36858-201ENSMUST00000194501 2391 ntBASIC17.07■□□□□ 0.32
Sh3rf1Q69ZI1 Gm6433-201ENSMUST00000118634 875 ntBASIC17.07■□□□□ 0.32
Sh3rf1Q69ZI1 Ikzf5-203ENSMUST00000128432 714 ntTSL 3 BASIC17.07■□□□□ 0.32
Sh3rf1Q69ZI1 Rcbtb2-217ENSMUST00000167401 868 ntTSL 5 BASIC17.07■□□□□ 0.32
Sh3rf1Q69ZI1 Igflr1-202ENSMUST00000172251 1224 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Sh3rf1Q69ZI1 Comtd1-204ENSMUST00000177527 714 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
Sh3rf1Q69ZI1 Tbc1d7-201ENSMUST00000021797 1239 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Sh3rf1Q69ZI1 Ndufa6-201ENSMUST00000023085 560 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Sh3rf1Q69ZI1 Was-201ENSMUST00000033505 2114 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Sh3rf1Q69ZI1 Limd2-202ENSMUST00000064545 798 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
Sh3rf1Q69ZI1 Zbtb24-202ENSMUST00000213797 2734 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Sh3rf1Q69ZI1 Clk4-201ENSMUST00000093132 1949 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Sh3rf1Q69ZI1 Fgfr2-215ENSMUST00000122054 3323 ntAPPRIS P4 TSL 1 (best) BASIC17.07■□□□□ 0.32
Retrieved 100 of 76,532 protein–RNA pairs in 36.2 ms