Protein–RNA interactions for Protein: Q61321

Six4, Homeobox protein SIX4, mousemouse

Predictions only

Length 775 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Six4Q61321 Ccl27a-219ENSMUST00000173865 657 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
Six4Q61321 Lsm1-203ENSMUST00000211168 343 ntTSL 3 BASIC17.01■□□□□ 0.31
Six4Q61321 AC134329.2-201ENSMUST00000217897 428 ntBASIC17.01■□□□□ 0.31
Six4Q61321 AC121577.1-201ENSMUST00000227302 707 ntBASIC17.01■□□□□ 0.31
Six4Q61321 Pdrg1-201ENSMUST00000028972 1273 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Six4Q61321 Ahcyl2-202ENSMUST00000102995 5155 ntAPPRIS ALT1 TSL 5 BASIC17.01■□□□□ 0.31
Six4Q61321 Snapc3-201ENSMUST00000030206 1405 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Six4Q61321 Rragd-201ENSMUST00000029946 5055 ntTSL 5 BASIC17.01■□□□□ 0.31
Six4Q61321 Cdc14b-201ENSMUST00000039318 5859 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
Six4Q61321 Zdhhc6-209ENSMUST00000225495 1711 ntBASIC17.01■□□□□ 0.31
Six4Q61321 Pacsin3-202ENSMUST00000059566 1867 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Six4Q61321 Fam149b-216ENSMUST00000225942 2151 ntAPPRIS ALT2 BASIC17.01■□□□□ 0.31
Six4Q61321 Abhd13-201ENSMUST00000048216 5074 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Six4Q61321 Gdf15-201ENSMUST00000003808 1545 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Six4Q61321 Scrib-203ENSMUST00000109946 5545 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
Six4Q61321 Prmt9-202ENSMUST00000118622 2768 ntAPPRIS ALT2 TSL 5 BASIC17■□□□□ 0.31
Six4Q61321 Ahr-202ENSMUST00000116436 5548 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Six4Q61321 2810408A11Rik-204ENSMUST00000108621 1455 ntAPPRIS ALT2 TSL 5 BASIC17■□□□□ 0.31
Six4Q61321 Atg4c-201ENSMUST00000030279 3178 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Six4Q61321 Nisch-221ENSMUST00000171735 1763 ntTSL 1 (best) BASIC17■□□□□ 0.31
Six4Q61321 Fxyd6-201ENSMUST00000085939 1788 ntAPPRIS P2 TSL 1 (best) BASIC17■□□□□ 0.31
Six4Q61321 Cxcl12-202ENSMUST00000112866 1878 ntAPPRIS ALT1 TSL 1 (best) BASIC17■□□□□ 0.31
Six4Q61321 Gm13836-201ENSMUST00000121159 501 ntBASIC17■□□□□ 0.31
Six4Q61321 Ppdpf-201ENSMUST00000016488 1160 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Six4Q61321 AC158538.1-201ENSMUST00000225870 294 ntBASIC17■□□□□ 0.31
Six4Q61321 Banf1-201ENSMUST00000025762 735 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Six4Q61321 Prdx5-201ENSMUST00000025904 1262 ntAPPRIS P2 TSL 1 (best) BASIC17■□□□□ 0.31
Six4Q61321 Sox6os-201ENSMUST00000032900 420 ntTSL 1 (best) BASIC17■□□□□ 0.31
Six4Q61321 Lrrc47-205ENSMUST00000169622 3468 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
Six4Q61321 Lrrfip2-202ENSMUST00000098340 3191 ntAPPRIS P2 TSL 1 (best) BASIC17■□□□□ 0.31
Six4Q61321 Zkscan6-202ENSMUST00000071465 2270 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Six4Q61321 Rala-201ENSMUST00000009003 2688 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Six4Q61321 Gm36858-201ENSMUST00000194501 2391 ntBASIC17■□□□□ 0.31
Six4Q61321 Isyna1-204ENSMUST00000210005 1914 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
Six4Q61321 Plppr2-203ENSMUST00000190387 2608 ntAPPRIS P2 TSL 1 (best) BASIC17■□□□□ 0.31
Six4Q61321 Casp3-204ENSMUST00000211115 2601 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Six4Q61321 Crocc-211ENSMUST00000168157 6244 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
Six4Q61321 Crocc-201ENSMUST00000040222 6248 ntTSL 5 BASIC16.99■□□□□ 0.31
Six4Q61321 Rab37-202ENSMUST00000067754 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
Six4Q61321 Pacs2-202ENSMUST00000220541 3101 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
Six4Q61321 Isl2-201ENSMUST00000034869 1854 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Six4Q61321 Nf2-205ENSMUST00000109910 4720 ntAPPRIS P3 TSL 1 (best) BASIC16.99■□□□□ 0.31
Six4Q61321 Mink1-201ENSMUST00000072237 4994 ntAPPRIS ALT2 TSL 5 BASIC16.99■□□□□ 0.31
Six4Q61321 Stk3-201ENSMUST00000018476 2914 ntAPPRIS P2 TSL 1 (best) BASIC16.99■□□□□ 0.31
Six4Q61321 Acvrl1-203ENSMUST00000119063 1818 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Six4Q61321 Prickle4-201ENSMUST00000113299 990 ntTSL 5 BASIC16.99■□□□□ 0.31
Six4Q61321 Prickle4-202ENSMUST00000113300 1110 ntAPPRIS P1 TSL 5 BASIC16.99■□□□□ 0.31
Six4Q61321 Gpha2-202ENSMUST00000113526 762 ntAPPRIS P1 TSL 5 BASIC16.99■□□□□ 0.31
Six4Q61321 Bola2-203ENSMUST00000130498 1266 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Six4Q61321 Gm22697-201ENSMUST00000175194 63 ntBASIC16.99■□□□□ 0.31
Six4Q61321 Bcl7c-205ENSMUST00000205977 891 ntTSL 2 BASIC16.99■□□□□ 0.31
Six4Q61321 AC107711.5-202ENSMUST00000226429 702 ntBASIC16.99■□□□□ 0.31
Six4Q61321 Gpha2-201ENSMUST00000025698 609 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Six4Q61321 Iscu-201ENSMUST00000026937 957 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Six4Q61321 Snx12-201ENSMUST00000077876 1002 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
Six4Q61321 Coro1a-201ENSMUST00000032949 1660 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Six4Q61321 E230001N04Rik-202ENSMUST00000181029 2091 ntBASIC16.99■□□□□ 0.31
Six4Q61321 Agpat3-203ENSMUST00000105388 3681 ntAPPRIS P1 TSL 5 BASIC16.99■□□□□ 0.31
Six4Q61321 Myrip-201ENSMUST00000048121 4906 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Six4Q61321 March8-202ENSMUST00000101032 4611 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Six4Q61321 Zxdc-203ENSMUST00000113539 4864 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
Six4Q61321 Vopp1-201ENSMUST00000114297 2919 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Six4Q61321 Krt6a-201ENSMUST00000023788 2256 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Six4Q61321 Ust-201ENSMUST00000061601 4228 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Six4Q61321 Zfp668-203ENSMUST00000106262 3169 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Six4Q61321 1700066B19Rik-201ENSMUST00000097617 2504 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Six4Q61321 Chd5-202ENSMUST00000030775 9486 ntAPPRIS P3 TSL 5 BASIC16.99■□□□□ 0.31
Six4Q61321 Slc2a8-201ENSMUST00000028129 2108 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Six4Q61321 Slc35e3-201ENSMUST00000079041 3489 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Six4Q61321 Foxp4-204ENSMUST00000113265 3999 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
Six4Q61321 4930455H04Rik-201ENSMUST00000117592 1341 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Six4Q61321 5830415G21Rik-201ENSMUST00000192543 1332 ntBASIC16.98■□□□□ 0.31
Six4Q61321 Nosip-201ENSMUST00000003513 1814 ntAPPRIS P3 TSL 1 (best) BASIC16.98■□□□□ 0.31
Six4Q61321 Atp6v1b2-201ENSMUST00000006435 2825 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Six4Q61321 Scarf2-201ENSMUST00000012161 3302 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Six4Q61321 Pard6g-201ENSMUST00000070219 3143 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Six4Q61321 Cops6-201ENSMUST00000019638 1787 ntAPPRIS P2 TSL 1 (best) BASIC16.98■□□□□ 0.31
Six4Q61321 Il9r-204ENSMUST00000142396 1542 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
Six4Q61321 Atp5g1-202ENSMUST00000107684 596 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Six4Q61321 Ccnd3-ps-201ENSMUST00000117963 881 ntBASIC16.98■□□□□ 0.31
Six4Q61321 Hist1h2br-203ENSMUST00000180288 1256 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
Six4Q61321 Lce1h-201ENSMUST00000051521 706 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Six4Q61321 Pdcd2-201ENSMUST00000054450 1120 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Six4Q61321 Krtcap3-201ENSMUST00000054829 904 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Six4Q61321 Angptl8-201ENSMUST00000058777 865 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Six4Q61321 Hist1h2bq-202ENSMUST00000091749 1254 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
Six4Q61321 Col15a1-201ENSMUST00000082303 5102 ntAPPRIS ALT2 TSL 2 BASIC16.98■□□□□ 0.31
Six4Q61321 Zkscan2-203ENSMUST00000128217 2218 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
Six4Q61321 Sema6c-214ENSMUST00000202315 2843 ntAPPRIS P3 TSL 1 (best) BASIC16.98■□□□□ 0.31
Six4Q61321 Dok4-201ENSMUST00000046461 2590 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Six4Q61321 Ewsr1-203ENSMUST00000079949 2588 ntAPPRIS P3 TSL 1 (best) BASIC16.98■□□□□ 0.31
Six4Q61321 Gm9774-202ENSMUST00000192538 1392 ntAPPRIS P1 BASIC16.98■□□□□ 0.31
Six4Q61321 Gm6190-201ENSMUST00000220683 1374 ntBASIC16.98■□□□□ 0.31
Six4Q61321 Cdca7-201ENSMUST00000102691 2424 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Six4Q61321 Paqr4-201ENSMUST00000024702 2507 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Six4Q61321 Pcolce-202ENSMUST00000054564 1585 ntAPPRIS ALT2 TSL 5 BASIC16.98■□□□□ 0.31
Six4Q61321 Ppfia1-201ENSMUST00000168134 5181 ntAPPRIS P3 TSL 1 (best) BASIC16.98■□□□□ 0.31
Six4Q61321 Lrch4-201ENSMUST00000031734 3078 ntAPPRIS P3 TSL 1 (best) BASIC16.98■□□□□ 0.31
Six4Q61321 Tasp1-201ENSMUST00000046656 2480 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Six4Q61321 Sft2d2-201ENSMUST00000043338 5535 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Retrieved 100 of 76,532 protein–RNA pairs in 35.9 ms