Protein–RNA interactions for Protein: Q60641

Nr1h4, Bile acid receptor, mousemouse

Predictions only

Length 488 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nr1h4Q60641 Nosip-201ENSMUST00000003513 1814 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
Nr1h4Q60641 Slc35e3-201ENSMUST00000079041 3489 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Nr1h4Q60641 Rilpl2-201ENSMUST00000031347 1391 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Nr1h4Q60641 Plekhh3-201ENSMUST00000043397 3056 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
Nr1h4Q60641 Tmprss5-201ENSMUST00000070390 2047 ntAPPRIS P2 TSL 1 (best) BASIC16.09■□□□□ 0.17
Nr1h4Q60641 Zbtb24-202ENSMUST00000213797 2734 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
Nr1h4Q60641 Rab27b-202ENSMUST00000117692 2842 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Nr1h4Q60641 2900052L18Rik-201ENSMUST00000139014 1588 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
Nr1h4Q60641 Eva1c-202ENSMUST00000099543 1554 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
Nr1h4Q60641 Cacnb4-201ENSMUST00000078324 8225 ntTSL 1 (best) BASIC16.08■□□□□ 0.17
Nr1h4Q60641 Zdhhc18-201ENSMUST00000084238 4580 ntAPPRIS P1 TSL 2 BASIC16.08■□□□□ 0.17
Nr1h4Q60641 9330151L19Rik-201ENSMUST00000181850 2545 ntTSL 1 (best) BASIC16.08■□□□□ 0.17
Nr1h4Q60641 Epb41l1-204ENSMUST00000103137 6490 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Nr1h4Q60641 Tnfrsf13c-201ENSMUST00000089161 1906 ntAPPRIS P2 TSL 1 (best) BASIC16.08■□□□□ 0.16
Nr1h4Q60641 Crem-234ENSMUST00000154470 1996 ntTSL 5 BASIC16.08■□□□□ 0.16
Nr1h4Q60641 1700067K01Rik-203ENSMUST00000172548 986 ntAPPRIS P2 TSL 1 (best) BASIC16.08■□□□□ 0.16
Nr1h4Q60641 Alkbh1-212ENSMUST00000185301 408 ntBASIC16.08■□□□□ 0.16
Nr1h4Q60641 1700003N22Rik-201ENSMUST00000194834 808 ntBASIC16.08■□□□□ 0.16
Nr1h4Q60641 Gm45337-201ENSMUST00000210537 1267 ntAPPRIS P1 BASIC16.08■□□□□ 0.16
Nr1h4Q60641 Gpaa1-201ENSMUST00000023221 2107 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Nr1h4Q60641 Grp-201ENSMUST00000025395 862 ntAPPRIS P2 TSL 1 (best) BASIC16.08■□□□□ 0.16
Nr1h4Q60641 Rbks-201ENSMUST00000031018 1042 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Nr1h4Q60641 Cystm1-201ENSMUST00000050584 831 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
Nr1h4Q60641 Cldn3-201ENSMUST00000094245 1259 ntAPPRIS P1 BASIC16.08■□□□□ 0.16
Nr1h4Q60641 Prdm11-201ENSMUST00000111272 3012 ntAPPRIS P1 TSL 5 BASIC16.08■□□□□ 0.16
Nr1h4Q60641 Tex264-203ENSMUST00000169068 1364 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Nr1h4Q60641 Lrrc73-201ENSMUST00000095262 1384 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Nr1h4Q60641 Crb2-201ENSMUST00000050372 6372 ntAPPRIS P1 TSL 5 BASIC16.08■□□□□ 0.16
Nr1h4Q60641 Dpep3-201ENSMUST00000034371 1698 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Nr1h4Q60641 Mef2d-203ENSMUST00000107559 1791 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
Nr1h4Q60641 Gm16754-201ENSMUST00000181222 2077 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
Nr1h4Q60641 Qprt-201ENSMUST00000032912 2050 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Nr1h4Q60641 Nadk2-203ENSMUST00000100790 3665 ntAPPRIS ALT2 TSL 5 BASIC16.07■□□□□ 0.16
Nr1h4Q60641 Fbxl19-204ENSMUST00000188580 2601 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
Nr1h4Q60641 Nudt8-203ENSMUST00000122924 1082 ntTSL 2 BASIC16.07■□□□□ 0.16
Nr1h4Q60641 1110065P20Rik-203ENSMUST00000137769 659 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
Nr1h4Q60641 Gm36210-201ENSMUST00000210663 1279 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
Nr1h4Q60641 AC166341.7-201ENSMUST00000221698 126 ntBASIC16.07■□□□□ 0.16
Nr1h4Q60641 Gpn2-201ENSMUST00000030661 1367 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Nr1h4Q60641 2810408A11Rik-201ENSMUST00000018714 1485 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
Nr1h4Q60641 Stxbp6-201ENSMUST00000053768 4553 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
Nr1h4Q60641 Serac1-201ENSMUST00000024570 2033 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
Nr1h4Q60641 Shank3-201ENSMUST00000039074 7131 ntAPPRIS P2 TSL 1 (best) BASIC16.07■□□□□ 0.16
Nr1h4Q60641 D16Ertd472e-203ENSMUST00000114220 2453 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Nr1h4Q60641 Cnot9-201ENSMUST00000087215 3268 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Nr1h4Q60641 Rnf168-203ENSMUST00000171474 4460 ntAPPRIS P2 TSL 1 (best) BASIC16.07■□□□□ 0.16
Nr1h4Q60641 Ccdc50-203ENSMUST00000100026 7089 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Nr1h4Q60641 Mfsd12-201ENSMUST00000044844 3971 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Nr1h4Q60641 Uso1-201ENSMUST00000031355 3898 ntAPPRIS P2 TSL 1 (best) BASIC16.06■□□□□ 0.16
Nr1h4Q60641 Ggnbp2-201ENSMUST00000018547 2478 ntTSL 5 BASIC16.06■□□□□ 0.16
Nr1h4Q60641 Mbp-201ENSMUST00000047865 2492 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
Nr1h4Q60641 Rbpms-203ENSMUST00000053251 2466 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
Nr1h4Q60641 Zfp316-202ENSMUST00000161448 6891 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Nr1h4Q60641 Slc8a3-202ENSMUST00000085238 4927 ntAPPRIS ALT1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Nr1h4Q60641 Nrg3-201ENSMUST00000166968 4011 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
Nr1h4Q60641 Lrig3-201ENSMUST00000074807 4016 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Nr1h4Q60641 Gm21596-201ENSMUST00000178049 1316 ntBASIC16.06■□□□□ 0.16
Nr1h4Q60641 Tmc6-202ENSMUST00000103025 1279 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
Nr1h4Q60641 4930554G22Rik-201ENSMUST00000196102 686 ntBASIC16.06■□□□□ 0.16
Nr1h4Q60641 Gucd1-211ENSMUST00000219774 806 ntTSL 3 BASIC16.06■□□□□ 0.16
Nr1h4Q60641 Cdk2ap2-201ENSMUST00000025779 1080 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Nr1h4Q60641 Ormdl3-201ENSMUST00000052919 2184 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Nr1h4Q60641 4930448E22Rik-202ENSMUST00000215242 2102 ntTSL 5 BASIC16.06■□□□□ 0.16
Nr1h4Q60641 Dclk2-208ENSMUST00000194452 2066 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
Nr1h4Q60641 Tra2a-204ENSMUST00000204189 1777 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
Nr1h4Q60641 F830208F22Rik-202ENSMUST00000143732 2891 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Nr1h4Q60641 Jade2-201ENSMUST00000020655 6273 ntAPPRIS P2 TSL 1 (best) BASIC16.05■□□□□ 0.16
Nr1h4Q60641 Rprm-201ENSMUST00000100089 1460 ntAPPRIS P1 BASIC16.05■□□□□ 0.16
Nr1h4Q60641 Gm13425-201ENSMUST00000145389 5391 ntTSL 3 BASIC16.05■□□□□ 0.16
Nr1h4Q60641 Tpsg1-204ENSMUST00000160920 867 ntTSL 3 BASIC16.05■□□□□ 0.16
Nr1h4Q60641 Smim10l1-204ENSMUST00000191462 574 ntTSL 3 BASIC16.05■□□□□ 0.16
Nr1h4Q60641 AC163280.1-201ENSMUST00000228194 1100 ntBASIC16.05■□□□□ 0.16
Nr1h4Q60641 Gng10-201ENSMUST00000041160 1192 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Nr1h4Q60641 Bex2-201ENSMUST00000049130 903 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Nr1h4Q60641 Mrps10-201ENSMUST00000060752 1109 ntTSL 5 BASIC16.05■□□□□ 0.16
Nr1h4Q60641 Igdcc4-202ENSMUST00000077696 6361 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
Nr1h4Q60641 Tm9sf1-205ENSMUST00000122358 2517 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Nr1h4Q60641 Gas6-201ENSMUST00000033828 2548 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Nr1h4Q60641 Lrrc45-201ENSMUST00000026139 2492 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Nr1h4Q60641 Mipep-201ENSMUST00000063562 3015 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Nr1h4Q60641 Mtcp1-201ENSMUST00000033542 1592 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Nr1h4Q60641 Cap1-202ENSMUST00000106255 2737 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Nr1h4Q60641 Dot1l-201ENSMUST00000105336 6808 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Nr1h4Q60641 Mcm9-201ENSMUST00000075540 4882 ntAPPRIS P1 TSL 2 BASIC16.04■□□□□ 0.16
Nr1h4Q60641 Tbc1d12-201ENSMUST00000037302 4209 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Nr1h4Q60641 Pacsin3-202ENSMUST00000059566 1867 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Nr1h4Q60641 Praf2-201ENSMUST00000033489 1339 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Nr1h4Q60641 Cox18-201ENSMUST00000048363 1333 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
Nr1h4Q60641 D330023K18Rik-201ENSMUST00000133550 920 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Nr1h4Q60641 Gm3807-201ENSMUST00000193520 1168 ntBASIC16.04■□□□□ 0.16
Nr1h4Q60641 Trappc6a-201ENSMUST00000002112 785 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Nr1h4Q60641 Eml2-201ENSMUST00000048502 2275 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
Nr1h4Q60641 Igdcc3-201ENSMUST00000034961 3146 ntAPPRIS P2 TSL 1 (best) BASIC16.04■□□□□ 0.16
Nr1h4Q60641 Smurf2-201ENSMUST00000092517 3125 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Nr1h4Q60641 Hap1-201ENSMUST00000103124 2120 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
Nr1h4Q60641 Atp6v1c1-201ENSMUST00000022904 2071 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Nr1h4Q60641 E530011L22Rik-201ENSMUST00000181325 5282 ntBASIC16.04■□□□□ 0.16
Nr1h4Q60641 Atp8b2-210ENSMUST00000168276 4265 ntAPPRIS P2 TSL 5 BASIC16.04■□□□□ 0.16
Nr1h4Q60641 Ctu1-201ENSMUST00000038332 2475 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Nr1h4Q60641 Dpf1-202ENSMUST00000065181 1574 ntAPPRIS ALT1 TSL 5 BASIC16.04■□□□□ 0.16
Retrieved 100 of 76,532 protein–RNA pairs in 22.6 ms