Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Skp1a-203ENSMUST00000109072 1754 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
Upf3bQ3ULL6 Zfp64-202ENSMUST00000109161 1009 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
Upf3bQ3ULL6 Pdxdc1-203ENSMUST00000115803 1268 ntAPPRIS ALT2 TSL 5 BASIC18.05■□□□□ 0.48
Upf3bQ3ULL6 Slc2a8-204ENSMUST00000153484 1168 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
Upf3bQ3ULL6 Mir5130-201ENSMUST00000175160 84 ntBASIC18.05■□□□□ 0.48
Upf3bQ3ULL6 Gm45442-201ENSMUST00000210038 411 ntTSL 3 BASIC18.05■□□□□ 0.48
Upf3bQ3ULL6 Coa6-201ENSMUST00000059093 747 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Upf3bQ3ULL6 Gm9987-201ENSMUST00000069768 567 ntBASIC18.05■□□□□ 0.48
Upf3bQ3ULL6 Lonrf1-201ENSMUST00000065297 3930 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
Upf3bQ3ULL6 Pick1-206ENSMUST00000166155 1699 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Upf3bQ3ULL6 Gjb3-201ENSMUST00000046532 1880 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Upf3bQ3ULL6 Atxn7l2-204ENSMUST00000119650 2274 ntTSL 5 BASIC18.05■□□□□ 0.48
Upf3bQ3ULL6 Cyp4f13-204ENSMUST00000139353 1389 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
Upf3bQ3ULL6 Gpr6-201ENSMUST00000061796 1786 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Upf3bQ3ULL6 Prdm11-201ENSMUST00000111272 3012 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
Upf3bQ3ULL6 Pex6-201ENSMUST00000002840 3200 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Upf3bQ3ULL6 Ptp4a2-201ENSMUST00000030578 3646 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
Upf3bQ3ULL6 Hoxd4-201ENSMUST00000047904 2560 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
Upf3bQ3ULL6 Cul4a-201ENSMUST00000016680 3728 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Upf3bQ3ULL6 Lonrf2-202ENSMUST00000147695 6932 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
Upf3bQ3ULL6 AC154855.1-201ENSMUST00000227353 1458 ntBASIC18.04■□□□□ 0.48
Upf3bQ3ULL6 Tfg-202ENSMUST00000121554 716 ntAPPRIS ALT2 TSL 5 BASIC18.04■□□□□ 0.48
Upf3bQ3ULL6 Mir7071-201ENSMUST00000184847 69 ntBASIC18.04■□□□□ 0.48
Upf3bQ3ULL6 Gm45058-201ENSMUST00000205810 766 ntBASIC18.04■□□□□ 0.48
Upf3bQ3ULL6 Chmp2a-203ENSMUST00000210587 930 ntAPPRIS P1 TSL 3 BASIC18.04■□□□□ 0.48
Upf3bQ3ULL6 Gm32151-201ENSMUST00000223521 915 ntTSL 5 BASIC18.04■□□□□ 0.48
Upf3bQ3ULL6 Syt9-201ENSMUST00000073459 3817 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Upf3bQ3ULL6 Nrbp1-207ENSMUST00000202576 2221 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
Upf3bQ3ULL6 Nrbp1-201ENSMUST00000031034 2203 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Upf3bQ3ULL6 Txnl1-201ENSMUST00000025476 2558 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Upf3bQ3ULL6 A930017K11Rik-201ENSMUST00000162431 2539 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Upf3bQ3ULL6 4930448E22Rik-201ENSMUST00000181712 1581 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
Upf3bQ3ULL6 Hmgb3-202ENSMUST00000072699 1571 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Upf3bQ3ULL6 Nfe2l1-202ENSMUST00000107657 3869 ntAPPRIS P3 TSL 5 BASIC18.03■□□□□ 0.48
Upf3bQ3ULL6 Mycbp-202ENSMUST00000106202 1536 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
Upf3bQ3ULL6 Amacr-201ENSMUST00000070877 2577 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Upf3bQ3ULL6 Klhdc8b-210ENSMUST00000193895 2718 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
Upf3bQ3ULL6 Gm20517-202ENSMUST00000132397 4807 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Upf3bQ3ULL6 Tnfrsf25-202ENSMUST00000035275 1603 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
Upf3bQ3ULL6 Capzb-202ENSMUST00000042675 1604 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
Upf3bQ3ULL6 Izumo1r-204ENSMUST00000121116 726 ntTSL 2 BASIC18.03■□□□□ 0.48
Upf3bQ3ULL6 Tnnt2-212ENSMUST00000189732 1123 ntAPPRIS ALT2 TSL 5 BASIC18.03■□□□□ 0.48
Upf3bQ3ULL6 Pldi-201ENSMUST00000036304 853 ntTSL 2 BASIC18.03■□□□□ 0.48
Upf3bQ3ULL6 Rab11fip5-202ENSMUST00000204087 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
Upf3bQ3ULL6 Snap91-202ENSMUST00000074468 4336 ntAPPRIS ALT2 TSL 5 BASIC18.03■□□□□ 0.48
Upf3bQ3ULL6 Spsb2-203ENSMUST00000112473 1322 ntBASIC18.02■□□□□ 0.48
Upf3bQ3ULL6 Platr31-201ENSMUST00000180653 1466 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
Upf3bQ3ULL6 Dock3-201ENSMUST00000044532 9063 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.48
Upf3bQ3ULL6 A430078I02Rik-202ENSMUST00000154066 2233 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
Upf3bQ3ULL6 Btbd10-203ENSMUST00000119278 2394 ntTSL 5 BASIC18.02■□□□□ 0.48
Upf3bQ3ULL6 Bcar1-201ENSMUST00000166232 3142 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.48
Upf3bQ3ULL6 Tnnt2-202ENSMUST00000112085 1076 ntAPPRIS ALT2 TSL 5 BASIC18.02■□□□□ 0.48
Upf3bQ3ULL6 Tnnt2-203ENSMUST00000112086 1094 ntAPPRIS ALT2 TSL 5 BASIC18.02■□□□□ 0.48
Upf3bQ3ULL6 Tnnt2-204ENSMUST00000112087 1112 ntAPPRIS ALT2 TSL 5 BASIC18.02■□□□□ 0.48
Upf3bQ3ULL6 Slc25a51-203ENSMUST00000132815 1005 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.48
Upf3bQ3ULL6 Gtf3a-204ENSMUST00000146511 1298 ntAPPRIS P5 TSL 1 (best) BASIC18.02■□□□□ 0.48
Upf3bQ3ULL6 Tnnt2-206ENSMUST00000178854 1076 ntAPPRIS ALT2 TSL 5 BASIC18.02■□□□□ 0.48
Upf3bQ3ULL6 Gm7854-202ENSMUST00000187409 1433 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
Upf3bQ3ULL6 Tnnt2-211ENSMUST00000189355 1112 ntAPPRIS ALT2 TSL 5 BASIC18.02■□□□□ 0.48
Upf3bQ3ULL6 Lrp5-201ENSMUST00000025856 5161 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Upf3bQ3ULL6 Rbm12b1-202ENSMUST00000069128 3069 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Upf3bQ3ULL6 Dnajc2-201ENSMUST00000030771 2133 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
Upf3bQ3ULL6 Gm11620-201ENSMUST00000118770 1845 ntBASIC18.02■□□□□ 0.47
Upf3bQ3ULL6 Dusp12-201ENSMUST00000027970 1374 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
Upf3bQ3ULL6 Atp6v1c1-201ENSMUST00000022904 2071 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
Upf3bQ3ULL6 Gm26697-201ENSMUST00000180898 1760 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
Upf3bQ3ULL6 Zfp622-201ENSMUST00000061875 2802 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Upf3bQ3ULL6 Mta1-201ENSMUST00000009099 2826 ntAPPRIS ALT2 TSL 5 BASIC18.01■□□□□ 0.47
Upf3bQ3ULL6 Srrm2-209ENSMUST00000190686 8864 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
Upf3bQ3ULL6 Wdr90-205ENSMUST00000176923 5666 ntAPPRIS ALT2 TSL 5 BASIC18.01■□□□□ 0.47
Upf3bQ3ULL6 Dnlz-201ENSMUST00000028295 2916 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Upf3bQ3ULL6 Gtf3a-201ENSMUST00000132102 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
Upf3bQ3ULL6 Nsg1-204ENSMUST00000201363 820 ntAPPRIS P1 TSL 2 BASIC18.01■□□□□ 0.47
Upf3bQ3ULL6 Arpc4-204ENSMUST00000204802 794 ntTSL 3 BASIC18.01■□□□□ 0.47
Upf3bQ3ULL6 Cog6-204ENSMUST00000193432 2078 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
Upf3bQ3ULL6 Tbx21-201ENSMUST00000001484 2488 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Upf3bQ3ULL6 Cnksr1-201ENSMUST00000030645 2468 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Upf3bQ3ULL6 Gm16759-201ENSMUST00000126238 1393 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
Upf3bQ3ULL6 Gm7008-201ENSMUST00000038121 1366 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
Upf3bQ3ULL6 Dzip3-202ENSMUST00000121869 5820 ntAPPRIS ALT2 TSL 5 BASIC18.01■□□□□ 0.47
Upf3bQ3ULL6 Msmo1-201ENSMUST00000034015 2044 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Upf3bQ3ULL6 Zfp865-203ENSMUST00000085427 2751 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
Upf3bQ3ULL6 Hspa8-201ENSMUST00000015800 2394 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Upf3bQ3ULL6 Adat2-201ENSMUST00000019944 1466 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Upf3bQ3ULL6 Spdef-205ENSMUST00000167489 1708 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
Upf3bQ3ULL6 Irak2-203ENSMUST00000089023 1734 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
Upf3bQ3ULL6 Rbpms2-201ENSMUST00000055844 1987 ntAPPRIS P2 TSL 1 (best) BASIC18■□□□□ 0.47
Upf3bQ3ULL6 Hmg20b-213ENSMUST00000167481 1321 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
Upf3bQ3ULL6 4933402J07Rik-201ENSMUST00000093342 1304 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Upf3bQ3ULL6 Tspan9-201ENSMUST00000032503 1405 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Upf3bQ3ULL6 2210408F21Rik-208ENSMUST00000144612 450 ntTSL 3 BASIC18■□□□□ 0.47
Upf3bQ3ULL6 Lamtor5-201ENSMUST00000145735 881 ntTSL 1 (best) BASIC18■□□□□ 0.47
Upf3bQ3ULL6 Pard3-226ENSMUST00000162907 4682 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
Upf3bQ3ULL6 Spata33-206ENSMUST00000212637 569 ntAPPRIS ALT2 TSL 2 BASIC18■□□□□ 0.47
Upf3bQ3ULL6 Gadd45b-203ENSMUST00000220246 732 ntTSL 2 BASIC18■□□□□ 0.47
Upf3bQ3ULL6 Olfr1232-201ENSMUST00000099785 936 ntAPPRIS P1 BASIC18■□□□□ 0.47
Upf3bQ3ULL6 Zrsr2-202ENSMUST00000112289 2735 ntAPPRIS P1 TSL 2 BASIC18■□□□□ 0.47
Upf3bQ3ULL6 Rbbp7-203ENSMUST00000112327 1862 ntTSL 5 BASIC18■□□□□ 0.47
Upf3bQ3ULL6 Plppr5-202ENSMUST00000106473 4294 ntTSL 1 (best) BASIC18■□□□□ 0.47
Upf3bQ3ULL6 Pigw-202ENSMUST00000108080 1728 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Retrieved 100 of 76,532 protein–RNA pairs in 23.1 ms