Protein–RNA interactions for Protein: P53784

Sox3, Transcription factor SOX-3, mousemouse

Predictions only

Length 375 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox3P53784 Meis2-202ENSMUST00000074285 2844 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Sox3P53784 Col15a1-201ENSMUST00000082303 5102 ntAPPRIS ALT2 TSL 2 BASIC16.12■□□□□ 0.17
Sox3P53784 Ttc14-203ENSMUST00000117915 4913 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
Sox3P53784 Mag-201ENSMUST00000040548 2419 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
Sox3P53784 Bex1-203ENSMUST00000113120 718 ntAPPRIS P1 TSL 3 BASIC16.12■□□□□ 0.17
Sox3P53784 Rnf186-201ENSMUST00000116094 1249 ntAPPRIS P1 BASIC16.12■□□□□ 0.17
Sox3P53784 Gm24589-201ENSMUST00000116692 94 ntBASIC16.12■□□□□ 0.17
Sox3P53784 Slbp-205ENSMUST00000139518 1191 ntAPPRIS ALT2 TSL 2 BASIC16.12■□□□□ 0.17
Sox3P53784 Mpv17l-205ENSMUST00000143697 580 ntTSL 2 BASIC16.12■□□□□ 0.17
Sox3P53784 Gm17808-201ENSMUST00000200859 894 ntBASIC16.12■□□□□ 0.17
Sox3P53784 Impdh1-210ENSMUST00000162739 2471 ntTSL 5 BASIC16.12■□□□□ 0.17
Sox3P53784 Mturn-203ENSMUST00000190641 5303 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Sox3P53784 Cops8-201ENSMUST00000036153 2287 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Sox3P53784 Nploc4-202ENSMUST00000103017 4025 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Sox3P53784 Timm17b-201ENSMUST00000033498 2381 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Sox3P53784 Abi1-215ENSMUST00000178908 2239 ntAPPRIS ALT1 TSL 5 BASIC16.11■□□□□ 0.17
Sox3P53784 Plekhh3-206ENSMUST00000164474 3010 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
Sox3P53784 Rasgrp1-201ENSMUST00000102534 5229 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
Sox3P53784 Ptges3l-202ENSMUST00000103102 1463 ntAPPRIS P2 TSL 1 (best) BASIC16.11■□□□□ 0.17
Sox3P53784 Gprin1-202ENSMUST00000135343 4248 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Sox3P53784 Mtcl1-201ENSMUST00000086693 7221 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
Sox3P53784 Gapdh-202ENSMUST00000117757 1273 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Sox3P53784 Znhit2-201ENSMUST00000162726 1281 ntAPPRIS P1 BASIC16.11■□□□□ 0.17
Sox3P53784 Gm27357-201ENSMUST00000183754 135 ntBASIC16.11■□□□□ 0.17
Sox3P53784 AC140264.2-201ENSMUST00000219668 289 ntTSL 2 BASIC16.11■□□□□ 0.17
Sox3P53784 Ndufb8-201ENSMUST00000026222 680 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Sox3P53784 Bpifa3-201ENSMUST00000028984 1107 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
Sox3P53784 Fbxo22-201ENSMUST00000034859 2112 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Sox3P53784 C1qbp-201ENSMUST00000078528 1175 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Sox3P53784 Olfr315-201ENSMUST00000081533 998 ntAPPRIS P1 BASIC16.11■□□□□ 0.17
Sox3P53784 Keap1-204ENSMUST00000193982 2163 ntAPPRIS P2 TSL 1 (best) BASIC16.11■□□□□ 0.17
Sox3P53784 Trim37-201ENSMUST00000041282 5632 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Sox3P53784 Fbxo7-203ENSMUST00000120344 1655 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
Sox3P53784 AL591207.1-203ENSMUST00000222401 1380 ntTSL 5 BASIC16.11■□□□□ 0.17
Sox3P53784 Nudt4-201ENSMUST00000020217 3210 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Sox3P53784 Dhx32-201ENSMUST00000033290 2955 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Sox3P53784 Btbd10-203ENSMUST00000119278 2394 ntTSL 5 BASIC16.11■□□□□ 0.17
Sox3P53784 Tle2-213ENSMUST00000146358 2749 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
Sox3P53784 Shroom3-204ENSMUST00000168878 5630 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Sox3P53784 Chmp2b-201ENSMUST00000004965 1838 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Sox3P53784 Hnrnph1-201ENSMUST00000069304 2225 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Sox3P53784 Gm15743-202ENSMUST00000182690 1901 ntBASIC16.1■□□□□ 0.17
Sox3P53784 Dut-201ENSMUST00000051605 1950 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Sox3P53784 Scml4-203ENSMUST00000105495 1033 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Sox3P53784 Mras-202ENSMUST00000119472 1190 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Sox3P53784 Hnrnph3-203ENSMUST00000119814 682 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Sox3P53784 Gm13474-201ENSMUST00000122466 815 ntBASIC16.1■□□□□ 0.17
Sox3P53784 Prr3-202ENSMUST00000165613 767 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Sox3P53784 Aldh1a3-204ENSMUST00000174215 1066 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Sox3P53784 Gm27389-201ENSMUST00000183622 195 ntBASIC16.1■□□□□ 0.17
Sox3P53784 AW822252-206ENSMUST00000208904 237 ntBASIC16.1■□□□□ 0.17
Sox3P53784 Tmem57-201ENSMUST00000030628 3826 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Sox3P53784 Exosc5-201ENSMUST00000079634 1020 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Sox3P53784 Sirt7-201ENSMUST00000080202 1727 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Sox3P53784 Nfib-205ENSMUST00000107247 3267 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
Sox3P53784 Snx11-202ENSMUST00000107661 2197 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Sox3P53784 Vps53-203ENSMUST00000108419 2209 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Sox3P53784 Dusp4-201ENSMUST00000033930 2740 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Sox3P53784 Atxn7l2-202ENSMUST00000117409 2321 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
Sox3P53784 Vhl-201ENSMUST00000035673 2792 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Sox3P53784 Bmp8a-202ENSMUST00000102641 1917 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
Sox3P53784 Ddhd1-201ENSMUST00000051310 5012 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
Sox3P53784 Gm16712-201ENSMUST00000181962 1960 ntTSL 2 BASIC16.09■□□□□ 0.17
Sox3P53784 Slc7a10-201ENSMUST00000001854 1953 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Sox3P53784 Dok7-202ENSMUST00000101298 2443 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
Sox3P53784 Tasp1-201ENSMUST00000046656 2480 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Sox3P53784 Atf7-209ENSMUST00000184485 2523 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Sox3P53784 Cdv3-207ENSMUST00000190226 3107 ntTSL 5 BASIC16.09■□□□□ 0.17
Sox3P53784 Tle4-201ENSMUST00000052011 4555 ntAPPRIS P2 TSL 1 (best) BASIC16.09■□□□□ 0.17
Sox3P53784 Ostf1-201ENSMUST00000025631 2726 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Sox3P53784 Mal-202ENSMUST00000028854 2778 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Sox3P53784 Hmbox1-203ENSMUST00000175744 1771 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
Sox3P53784 Sap18-203ENSMUST00000111269 459 ntTSL 2 BASIC16.09■□□□□ 0.17
Sox3P53784 Dpy30-201ENSMUST00000112571 790 ntAPPRIS P1 TSL 2 BASIC16.09■□□□□ 0.17
Sox3P53784 Rab3d-202ENSMUST00000119055 694 ntTSL 3 BASIC16.09■□□□□ 0.17
Sox3P53784 Gm14964-202ENSMUST00000149574 716 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
Sox3P53784 Gm20422-202ENSMUST00000149782 956 ntTSL 2 BASIC16.09■□□□□ 0.17
Sox3P53784 Ttc32-203ENSMUST00000219488 768 ntTSL 3 BASIC16.09■□□□□ 0.17
Sox3P53784 Nme4-201ENSMUST00000025007 912 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Sox3P53784 Rbl2-201ENSMUST00000034091 4925 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
Sox3P53784 Rab1b-201ENSMUST00000025804 1835 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Sox3P53784 Abtb1-201ENSMUST00000032169 1845 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Sox3P53784 Gpsm3-201ENSMUST00000038244 1343 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Sox3P53784 Sult2b1-204ENSMUST00000209739 1858 ntAPPRIS ALT2 TSL 5 BASIC16.09■□□□□ 0.17
Sox3P53784 Gjb3-201ENSMUST00000046532 1880 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Sox3P53784 Lsp1-204ENSMUST00000105967 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
Sox3P53784 Nt5dc3-201ENSMUST00000099396 5952 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Sox3P53784 Camsap3-212ENSMUST00000208240 2572 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
Sox3P53784 Atp1b1-201ENSMUST00000027863 2580 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Sox3P53784 Guf1-202ENSMUST00000087228 3433 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Sox3P53784 Tbc1d9-202ENSMUST00000093393 5334 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Sox3P53784 Bub3-201ENSMUST00000084502 2218 ntAPPRIS P2 TSL 1 (best) BASIC16.09■□□□□ 0.17
Sox3P53784 Cacna1b-202ENSMUST00000070864 9655 ntAPPRIS P3 TSL 5 BASIC16.08■□□□□ 0.17
Sox3P53784 Evx2-201ENSMUST00000001867 4191 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
Sox3P53784 Gbe1-201ENSMUST00000023393 2846 ntAPPRIS ALT2 TSL 5 BASIC16.08■□□□□ 0.16
Sox3P53784 Prkcz-203ENSMUST00000105624 694 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
Sox3P53784 Tpm2-203ENSMUST00000107914 1164 ntAPPRIS ALT1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Sox3P53784 Srgn-205ENSMUST00000162161 694 ntAPPRIS P1 TSL 3 BASIC16.08■□□□□ 0.16
Sox3P53784 Mir3081-201ENSMUST00000175305 84 ntBASIC16.08■□□□□ 0.16
Sox3P53784 Stk11-210ENSMUST00000213772 1239 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
Retrieved 100 of 76,532 protein–RNA pairs in 55.1 ms