Protein–RNA interactions for Protein: P13705

Msh3, DNA mismatch repair protein Msh3, mousemouse

Predictions only

Length 1,091 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msh3P13705 Pbx4-201ENSMUST00000081503 1560 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
Msh3P13705 Pih1d1-201ENSMUST00000085375 1185 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Msh3P13705 Rfx7-201ENSMUST00000093820 7988 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
Msh3P13705 Gm26596-201ENSMUST00000180464 2655 ntBASIC18.53■□□□□ 0.56
Msh3P13705 Ube2d3-202ENSMUST00000166033 2504 ntAPPRIS P2 TSL 1 (best) BASIC18.53■□□□□ 0.56
Msh3P13705 Slc35e1-202ENSMUST00000152080 4383 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Msh3P13705 Phtf1-201ENSMUST00000055425 3060 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
Msh3P13705 Itsn2-215ENSMUST00000220311 6080 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
Msh3P13705 Cops6-201ENSMUST00000019638 1787 ntAPPRIS P2 TSL 1 (best) BASIC18.53■□□□□ 0.56
Msh3P13705 2810408A11Rik-204ENSMUST00000108621 1455 ntAPPRIS ALT2 TSL 5 BASIC18.52■□□□□ 0.56
Msh3P13705 Gm26781-201ENSMUST00000181385 1477 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
Msh3P13705 2310022A10Rik-201ENSMUST00000067386 2701 ntAPPRIS P2 TSL 1 (best) BASIC18.52■□□□□ 0.56
Msh3P13705 Gps1-207ENSMUST00000172809 2000 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
Msh3P13705 Gm19569-202ENSMUST00000184658 1305 ntTSL 2 BASIC18.52■□□□□ 0.56
Msh3P13705 Prss53-201ENSMUST00000121394 2134 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Msh3P13705 Gpr20-201ENSMUST00000064166 2144 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Msh3P13705 Pqlc1-202ENSMUST00000091798 1989 ntAPPRIS P3 TSL 5 BASIC18.52■□□□□ 0.56
Msh3P13705 Gm43548-201ENSMUST00000197139 2353 ntBASIC18.52■□□□□ 0.56
Msh3P13705 Rps5-202ENSMUST00000108539 794 ntAPPRIS P1 TSL 2 BASIC18.52■□□□□ 0.56
Msh3P13705 Sap18-201ENSMUST00000111267 660 ntTSL 2 BASIC18.52■□□□□ 0.56
Msh3P13705 Gm26879-201ENSMUST00000181127 1176 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
Msh3P13705 4930544I03Rik-201ENSMUST00000181184 1276 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
Msh3P13705 Gdf15-201ENSMUST00000003808 1545 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Msh3P13705 Arntl-204ENSMUST00000210238 2976 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.56
Msh3P13705 Rsph3a-201ENSMUST00000097423 2189 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Msh3P13705 Fam3a-206ENSMUST00000114143 1899 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
Msh3P13705 Mcl1-201ENSMUST00000037947 3418 ntAPPRIS P2 TSL 1 (best) BASIC18.52■□□□□ 0.55
Msh3P13705 Sorcs2-201ENSMUST00000037370 5707 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
Msh3P13705 Gm17509-201ENSMUST00000165680 2375 ntAPPRIS P1 BASIC18.52■□□□□ 0.55
Msh3P13705 Acvr1c-204ENSMUST00000112608 1497 ntAPPRIS ALT2 TSL 5 BASIC18.52■□□□□ 0.55
Msh3P13705 Gfra2-202ENSMUST00000227633 1480 ntBASIC18.52■□□□□ 0.55
Msh3P13705 Ankra2-204ENSMUST00000150352 2217 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
Msh3P13705 Uchl5-201ENSMUST00000018333 1845 ntAPPRIS ALT1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Msh3P13705 Snx16-201ENSMUST00000029047 2288 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
Msh3P13705 Mtss1l-201ENSMUST00000052457 4717 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Msh3P13705 Helt-201ENSMUST00000058636 1541 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Msh3P13705 Gm6433-201ENSMUST00000118634 875 ntBASIC18.51■□□□□ 0.55
Msh3P13705 Dohh-202ENSMUST00000121047 946 ntTSL 2 BASIC18.51■□□□□ 0.55
Msh3P13705 Taco1os-201ENSMUST00000140736 644 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
Msh3P13705 Acaa1a-203ENSMUST00000175743 1219 ntTSL 5 BASIC18.51■□□□□ 0.55
Msh3P13705 Acaa1a-207ENSMUST00000176397 996 ntTSL 5 BASIC18.51■□□□□ 0.55
Msh3P13705 Mir6982-201ENSMUST00000184354 68 ntBASIC18.51■□□□□ 0.55
Msh3P13705 Fam46c-201ENSMUST00000061455 5640 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Msh3P13705 Vmn1r17-201ENSMUST00000227186 2234 ntAPPRIS P2 BASIC18.51■□□□□ 0.55
Msh3P13705 Ormdl3-201ENSMUST00000052919 2184 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Msh3P13705 Relt-201ENSMUST00000008462 2851 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Msh3P13705 Klc1-202ENSMUST00000118471 2272 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
Msh3P13705 Fem1c-201ENSMUST00000036226 5726 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Msh3P13705 Ptpdc1-204ENSMUST00000222028 3164 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
Msh3P13705 Lrrfip2-202ENSMUST00000098340 3191 ntAPPRIS P2 TSL 1 (best) BASIC18.5■□□□□ 0.55
Msh3P13705 Pcmt1-202ENSMUST00000159917 2491 ntAPPRIS P3 TSL 1 (best) BASIC18.5■□□□□ 0.55
Msh3P13705 Ccdc184-201ENSMUST00000031914 2329 ntAPPRIS P1 BASIC18.5■□□□□ 0.55
Msh3P13705 Xpr1-202ENSMUST00000111774 2753 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
Msh3P13705 A530084C06Rik-201ENSMUST00000170573 3200 ntAPPRIS P1 BASIC18.5■□□□□ 0.55
Msh3P13705 9330151L19Rik-201ENSMUST00000181850 2545 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
Msh3P13705 Drd2-201ENSMUST00000075764 2547 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Msh3P13705 Cnppd1-208ENSMUST00000190679 2062 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Msh3P13705 Rgs3-203ENSMUST00000098031 2072 ntAPPRIS ALT1 TSL 5 BASIC18.5■□□□□ 0.55
Msh3P13705 Sox18-201ENSMUST00000054491 1620 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Msh3P13705 Gm16120-201ENSMUST00000127990 808 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
Msh3P13705 Pcyox1-206ENSMUST00000204116 546 ntTSL 5 BASIC18.5■□□□□ 0.55
Msh3P13705 Ldlrad1-201ENSMUST00000094916 1093 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
Msh3P13705 Mipep-201ENSMUST00000063562 3015 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Msh3P13705 Abhd16a-201ENSMUST00000007251 1945 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Msh3P13705 Zswim8-208ENSMUST00000224751 5951 ntAPPRIS ALT2 BASIC18.5■□□□□ 0.55
Msh3P13705 Mon1a-201ENSMUST00000035202 2042 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Msh3P13705 Lsm1-201ENSMUST00000038421 2663 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Msh3P13705 March8-202ENSMUST00000101032 4611 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Msh3P13705 Fbxo17-203ENSMUST00000108279 1563 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
Msh3P13705 Dyx1c1-201ENSMUST00000034734 1975 ntAPPRIS P3 TSL 1 (best) BASIC18.5■□□□□ 0.55
Msh3P13705 Gbe1-201ENSMUST00000023393 2846 ntAPPRIS ALT2 TSL 5 BASIC18.5■□□□□ 0.55
Msh3P13705 Nmt2-203ENSMUST00000102989 2162 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
Msh3P13705 Igsf11-201ENSMUST00000023478 3443 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Msh3P13705 Crocc-211ENSMUST00000168157 6244 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
Msh3P13705 Nr1h3-202ENSMUST00000111354 1738 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Msh3P13705 Crhbp-201ENSMUST00000045583 1701 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
Msh3P13705 Asap2-204ENSMUST00000101562 5552 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
Msh3P13705 Ptgfrn-201ENSMUST00000102694 5902 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Msh3P13705 Cdc34-202ENSMUST00000166603 1078 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Msh3P13705 Mir5130-201ENSMUST00000175160 84 ntBASIC18.49■□□□□ 0.55
Msh3P13705 Gm18959-201ENSMUST00000208954 655 ntBASIC18.49■□□□□ 0.55
Msh3P13705 Sec11c-201ENSMUST00000025394 807 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Msh3P13705 Mrpl21-202ENSMUST00000025745 1138 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
Msh3P13705 Pdrg1-201ENSMUST00000028972 1273 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Msh3P13705 Ccdc6-203ENSMUST00000147545 5511 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
Msh3P13705 Rab7-203ENSMUST00000113597 1859 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Msh3P13705 Gm18336-201ENSMUST00000180787 2298 ntAPPRIS P1 BASIC18.49■□□□□ 0.55
Msh3P13705 Dok4-201ENSMUST00000046461 2590 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Msh3P13705 Lrch3-203ENSMUST00000135193 2794 ntAPPRIS ALT2 TSL 5 BASIC18.49■□□□□ 0.55
Msh3P13705 Camta1-204ENSMUST00000105670 4961 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
Msh3P13705 Slc30a9-201ENSMUST00000113676 5648 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
Msh3P13705 Chsy3-201ENSMUST00000080721 2931 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Msh3P13705 Zbtb24-201ENSMUST00000080771 2844 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Msh3P13705 Aipl1-201ENSMUST00000048207 2309 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Msh3P13705 Gpc3-201ENSMUST00000069360 2216 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Msh3P13705 Secisbp2-202ENSMUST00000110044 1915 ntTSL 2 BASIC18.49■□□□□ 0.55
Msh3P13705 Obsl1-202ENSMUST00000113567 5679 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Msh3P13705 Chmp2b-201ENSMUST00000004965 1838 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Msh3P13705 Rdx-202ENSMUST00000061352 1502 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
Msh3P13705 Atp2a2-201ENSMUST00000031423 4486 ntAPPRIS P4 TSL 1 (best) BASIC18.49■□□□□ 0.55
Retrieved 100 of 76,532 protein–RNA pairs in 74.8 ms