Protein–RNA interactions for Protein: F7BJK1

Pcdh1, Protocadherin 1 (Fragment), mousemouse

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdh1F7BJK1 Gm44210-201ENSMUST00000205253 713 ntTSL 3 BASIC15.2■□□□□ 0.02
Pcdh1F7BJK1 Gm44672-201ENSMUST00000206944 1098 ntBASIC15.2■□□□□ 0.02
Pcdh1F7BJK1 Cdk2ap2-201ENSMUST00000025779 1080 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Pcdh1F7BJK1 Col17a1-202ENSMUST00000086923 5477 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
Pcdh1F7BJK1 Gopc-202ENSMUST00000105475 4317 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
Pcdh1F7BJK1 Wnt10b-207ENSMUST00000228594 1510 ntAPPRIS P1 BASIC15.2■□□□□ 0.02
Pcdh1F7BJK1 Slc13a3-202ENSMUST00000109279 3131 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
Pcdh1F7BJK1 BC029722-201ENSMUST00000124586 1615 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Pcdh1F7BJK1 Gpr180-201ENSMUST00000022728 1875 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Pcdh1F7BJK1 Mfsd12-201ENSMUST00000044844 3971 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Pcdh1F7BJK1 Scin-201ENSMUST00000002640 2995 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Pcdh1F7BJK1 Arid3b-202ENSMUST00000098686 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
Pcdh1F7BJK1 Mff-212ENSMUST00000162003 2087 ntTSL 5 BASIC15.2■□□□□ 0.02
Pcdh1F7BJK1 Bend5-201ENSMUST00000030274 1826 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Pcdh1F7BJK1 Adgrb2-204ENSMUST00000106015 4982 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
Pcdh1F7BJK1 BC030336-201ENSMUST00000060175 4831 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Pcdh1F7BJK1 2810410L24Rik-202ENSMUST00000155681 2615 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Pcdh1F7BJK1 Mrps23-203ENSMUST00000118784 1404 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Pcdh1F7BJK1 Gm5421-201ENSMUST00000181698 2354 ntBASIC15.19■□□□□ 0.02
Pcdh1F7BJK1 Doc2g-201ENSMUST00000025806 1446 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Pcdh1F7BJK1 Gpr6-201ENSMUST00000061796 1786 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Pcdh1F7BJK1 Ccnd3-202ENSMUST00000171031 2113 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
Pcdh1F7BJK1 Kcnq2-205ENSMUST00000103048 2827 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Pcdh1F7BJK1 Stk33-201ENSMUST00000090414 2221 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
Pcdh1F7BJK1 Unc13b-203ENSMUST00000107953 5034 ntAPPRIS ALT2 TSL 5 BASIC15.19■□□□□ 0.02
Pcdh1F7BJK1 Bex3-202ENSMUST00000113112 826 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
Pcdh1F7BJK1 AC107711.5-202ENSMUST00000226429 702 ntBASIC15.19■□□□□ 0.02
Pcdh1F7BJK1 5033430I15Rik-201ENSMUST00000038032 729 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Pcdh1F7BJK1 Gng5-201ENSMUST00000090031 593 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Pcdh1F7BJK1 Adss-201ENSMUST00000016105 2771 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Pcdh1F7BJK1 Gm4425-201ENSMUST00000172838 2857 ntTSL 2 BASIC15.19■□□□□ 0.02
Pcdh1F7BJK1 Sf1-202ENSMUST00000113487 2649 ntAPPRIS ALT1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Pcdh1F7BJK1 Aptx-203ENSMUST00000108103 2391 ntAPPRIS ALT2 TSL 5 BASIC15.19■□□□□ 0.02
Pcdh1F7BJK1 Zfp219-212ENSMUST00000228580 2812 ntAPPRIS ALT2 BASIC15.19■□□□□ 0.02
Pcdh1F7BJK1 Spata6-201ENSMUST00000038868 2466 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Pcdh1F7BJK1 Braf-201ENSMUST00000002487 9728 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Pcdh1F7BJK1 Pacs2-202ENSMUST00000220541 3101 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
Pcdh1F7BJK1 Atp1a1-201ENSMUST00000036493 3679 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Pcdh1F7BJK1 Nhsl1-209ENSMUST00000207038 4854 ntAPPRIS ALT2 TSL 5 BASIC15.18■□□□□ 0.02
Pcdh1F7BJK1 Nhs-201ENSMUST00000081569 4881 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
Pcdh1F7BJK1 Tfeb-204ENSMUST00000113288 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
Pcdh1F7BJK1 Rccd1-202ENSMUST00000121882 2324 ntAPPRIS P1 TSL 5 BASIC15.18■□□□□ 0.02
Pcdh1F7BJK1 Ptges2-201ENSMUST00000028162 4978 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Pcdh1F7BJK1 Gna12-201ENSMUST00000000153 3416 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Pcdh1F7BJK1 Ogfr-201ENSMUST00000029087 2449 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Pcdh1F7BJK1 Napa-201ENSMUST00000006181 2517 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Pcdh1F7BJK1 Tlk1-201ENSMUST00000038584 4280 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Pcdh1F7BJK1 Tmem57-201ENSMUST00000030628 3826 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Pcdh1F7BJK1 Tulp1-202ENSMUST00000114794 1738 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
Pcdh1F7BJK1 Arntl-203ENSMUST00000210074 2554 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
Pcdh1F7BJK1 Lrriq3-201ENSMUST00000029833 2652 ntAPPRIS P2 TSL 1 (best) BASIC15.18■□□□□ 0.02
Pcdh1F7BJK1 Plekha4-206ENSMUST00000211155 2044 ntAPPRIS ALT2 TSL 5 BASIC15.18■□□□□ 0.02
Pcdh1F7BJK1 Wscd1-203ENSMUST00000108511 2866 ntAPPRIS P1 TSL 5 BASIC15.18■□□□□ 0.02
Pcdh1F7BJK1 1110004E09Rik-201ENSMUST00000023694 1143 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Pcdh1F7BJK1 Yipf4-201ENSMUST00000024873 2133 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Pcdh1F7BJK1 Gng10-201ENSMUST00000041160 1192 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Pcdh1F7BJK1 Mrps10-201ENSMUST00000060752 1109 ntTSL 5 BASIC15.18■□□□□ 0.02
Pcdh1F7BJK1 Agbl5-208ENSMUST00000201168 3199 ntAPPRIS ALT2 TSL 5 BASIC15.18■□□□□ 0.02
Pcdh1F7BJK1 Il3ra-203ENSMUST00000224163 2315 ntAPPRIS P2 BASIC15.18■□□□□ 0.02
Pcdh1F7BJK1 Abcb10-201ENSMUST00000075578 4306 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Pcdh1F7BJK1 Rprm-201ENSMUST00000100089 1460 ntAPPRIS P1 BASIC15.18■□□□□ 0.02
Pcdh1F7BJK1 Apoa5-202ENSMUST00000121598 2515 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Pcdh1F7BJK1 Mink1-202ENSMUST00000072873 4610 ntAPPRIS ALT2 TSL 5 BASIC15.18■□□□□ 0.02
Pcdh1F7BJK1 Mvk-201ENSMUST00000043760 1660 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
Pcdh1F7BJK1 Dpm1-209ENSMUST00000154111 2293 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Pcdh1F7BJK1 Tbc1d19-201ENSMUST00000037337 2273 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Pcdh1F7BJK1 Npas3-201ENSMUST00000101432 5879 ntAPPRIS P2 TSL 1 (best) BASIC15.18■□□□□ 0.02
Pcdh1F7BJK1 Fmnl2-202ENSMUST00000050719 3380 ntTSL 5 BASIC15.18■□□□□ 0.02
Pcdh1F7BJK1 Fam71e1-202ENSMUST00000205359 1307 ntAPPRIS ALT2 TSL 2 BASIC15.17■□□□□ 0.02
Pcdh1F7BJK1 Aifm2-201ENSMUST00000067857 1442 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Pcdh1F7BJK1 Pdss2-201ENSMUST00000095725 2127 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Pcdh1F7BJK1 Gm10516-201ENSMUST00000180598 2615 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Pcdh1F7BJK1 Usp49-201ENSMUST00000024779 8252 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Pcdh1F7BJK1 Sclt1-201ENSMUST00000026866 3005 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
Pcdh1F7BJK1 Susd1-202ENSMUST00000107544 3220 ntAPPRIS ALT2 TSL 5 BASIC15.17■□□□□ 0.02
Pcdh1F7BJK1 Appl1-201ENSMUST00000036570 7642 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Pcdh1F7BJK1 Dnah9-202ENSMUST00000108691 2671 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Pcdh1F7BJK1 Trmt2a-203ENSMUST00000115640 2367 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
Pcdh1F7BJK1 Gm11249-201ENSMUST00000117071 859 ntBASIC15.17■□□□□ 0.02
Pcdh1F7BJK1 Ndufa12-204ENSMUST00000179990 566 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Pcdh1F7BJK1 Haspin-201ENSMUST00000052140 2810 ntAPPRIS P1 BASIC15.17■□□□□ 0.02
Pcdh1F7BJK1 Gramd3-201ENSMUST00000070166 2605 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Pcdh1F7BJK1 Fiz1-201ENSMUST00000077385 2546 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Pcdh1F7BJK1 Bcam-201ENSMUST00000003061 2429 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Pcdh1F7BJK1 Zmym3-206ENSMUST00000120107 5882 ntAPPRIS ALT2 TSL 5 BASIC15.17■□□□□ 0.02
Pcdh1F7BJK1 Chst10-206ENSMUST00000194361 2996 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
Pcdh1F7BJK1 Mgat1-201ENSMUST00000081794 2976 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Pcdh1F7BJK1 Wdr13-202ENSMUST00000115623 1749 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
Pcdh1F7BJK1 Ilk-212ENSMUST00000163389 1749 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Pcdh1F7BJK1 Disc1-201ENSMUST00000074562 2597 ntAPPRIS ALT2 TSL 5 BASIC15.17■□□□□ 0.02
Pcdh1F7BJK1 Disc1-203ENSMUST00000098311 2597 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
Pcdh1F7BJK1 Mettl4-ps1-202ENSMUST00000130218 1323 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Pcdh1F7BJK1 Arid3c-202ENSMUST00000150809 1327 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
Pcdh1F7BJK1 Wdr26-207ENSMUST00000162819 6619 ntAPPRIS P2 TSL 1 (best) BASIC15.17■□□□□ 0.02
Pcdh1F7BJK1 Hyls1-201ENSMUST00000115110 1973 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Pcdh1F7BJK1 Ankrd23-201ENSMUST00000054665 1964 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Pcdh1F7BJK1 Pqlc1-202ENSMUST00000091798 1989 ntAPPRIS P3 TSL 5 BASIC15.16■□□□□ 0.02
Pcdh1F7BJK1 Cadps2-212ENSMUST00000163871 4969 ntAPPRIS ALT2 TSL 5 BASIC15.16■□□□□ 0.02
Pcdh1F7BJK1 Nadk-203ENSMUST00000105613 3152 ntAPPRIS P2 TSL 1 (best) BASIC15.16■□□□□ 0.02
Pcdh1F7BJK1 D17Wsu92e-203ENSMUST00000114863 3828 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
Retrieved 100 of 76,532 protein–RNA pairs in 36.1 ms