Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 AL355581.1-201ENST00000415964 830 ntTSL 2 BASIC7.42□□□□□ -1.22
CCDC39Q9UFE4 AC016745.1-201ENST00000422178 508 ntTSL 5 BASIC7.42□□□□□ -1.22
CCDC39Q9UFE4 AL358394.1-201ENST00000422807 535 ntTSL 2 BASIC7.42□□□□□ -1.22
CCDC39Q9UFE4 C14orf105-202ENST00000422976 1153 ntTSL 1 (best) BASIC7.42□□□□□ -1.22
CCDC39Q9UFE4 MTND4P24-201ENST00000424002 397 ntBASIC7.42□□□□□ -1.22
CCDC39Q9UFE4 AL135908.1-201ENST00000431394 446 ntTSL 3 BASIC7.42□□□□□ -1.22
CCDC39Q9UFE4 ATP6V1G1P4-201ENST00000438388 335 ntBASIC7.42□□□□□ -1.22
CCDC39Q9UFE4 LINC01681-201ENST00000439184 760 ntTSL 2 BASIC7.42□□□□□ -1.22
CCDC39Q9UFE4 AL117336.1-201ENST00000439198 380 ntTSL 2 BASIC7.42□□□□□ -1.22
CCDC39Q9UFE4 NFIA-AS1-201ENST00000442027 384 ntTSL 2 BASIC7.42□□□□□ -1.22
CCDC39Q9UFE4 AC003001.1-201ENST00000443247 1135 ntTSL 5 BASIC7.42□□□□□ -1.22
CCDC39Q9UFE4 LIX1L-AS1-206ENST00000447686 846 ntTSL 2 BASIC7.42□□□□□ -1.22
CCDC39Q9UFE4 AC092164.1-201ENST00000452212 726 ntTSL 2 BASIC7.42□□□□□ -1.22
CCDC39Q9UFE4 RPL36AP55-201ENST00000454114 305 ntBASIC7.42□□□□□ -1.22
CCDC39Q9UFE4 AC027673.1-201ENST00000456245 405 ntBASIC7.42□□□□□ -1.22
CCDC39Q9UFE4 CCNJP2-201ENST00000457810 1163 ntBASIC7.42□□□□□ -1.22
CCDC39Q9UFE4 snoU13.29-201ENST00000459370 104 ntBASIC7.42□□□□□ -1.22
CCDC39Q9UFE4 MTND2P14-201ENST00000482139 351 ntBASIC7.42□□□□□ -1.22
CCDC39Q9UFE4 AC108748.1-201ENST00000487772 515 ntTSL 3 BASIC7.42□□□□□ -1.22
CCDC39Q9UFE4 AC093815.1-201ENST00000508637 280 ntBASIC7.42□□□□□ -1.22
CCDC39Q9UFE4 AC109464.2-201ENST00000510242 943 ntBASIC7.42□□□□□ -1.22
CCDC39Q9UFE4 SCARNA11.1-201ENST00000516918 132 ntBASIC7.42□□□□□ -1.22
CCDC39Q9UFE4 TBCA-209ENST00000522370 435 ntTSL 3 BASIC7.42□□□□□ -1.22
CCDC39Q9UFE4 AC016405.1-202ENST00000524348 758 ntTSL 3 BASIC7.42□□□□□ -1.22
CCDC39Q9UFE4 AP003715.1-201ENST00000532109 435 ntTSL 3 BASIC7.42□□□□□ -1.22
CCDC39Q9UFE4 AC073916.1-201ENST00000545095 130 ntBASIC7.42□□□□□ -1.22
CCDC39Q9UFE4 MRPL42-208ENST00000552217 920 ntAPPRIS P2 TSL 2 BASIC7.42□□□□□ -1.22
CCDC39Q9UFE4 AL135746.1-201ENST00000554205 547 ntTSL 3 BASIC7.42□□□□□ -1.22
CCDC39Q9UFE4 DNAL1-206ENST00000554871 632 ntTSL 1 (best) BASIC7.42□□□□□ -1.22
CCDC39Q9UFE4 AC008015.1-201ENST00000555505 465 ntBASIC7.42□□□□□ -1.22
CCDC39Q9UFE4 SETP1-201ENST00000556014 845 ntBASIC7.42□□□□□ -1.22
CCDC39Q9UFE4 AC134312.6-201ENST00000568587 444 ntTSL 5 BASIC7.42□□□□□ -1.22
CCDC39Q9UFE4 OOSP1P2-201ENST00000579644 351 ntBASIC7.42□□□□□ -1.22
CCDC39Q9UFE4 NPM1P45-201ENST00000583151 559 ntBASIC7.42□□□□□ -1.22
CCDC39Q9UFE4 AL136084.2-222ENST00000589105 885 ntTSL 5 BASIC7.42□□□□□ -1.22
CCDC39Q9UFE4 AC010326.3-201ENST00000597780 679 ntTSL 5 BASIC7.42□□□□□ -1.22
CCDC39Q9UFE4 AL360012.1-201ENST00000602813 131 ntBASIC7.42□□□□□ -1.22
CCDC39Q9UFE4 AP001981.2-201ENST00000603241 418 ntBASIC7.42□□□□□ -1.22
CCDC39Q9UFE4 RPS4XP21-201ENST00000603814 750 ntBASIC7.42□□□□□ -1.22
CCDC39Q9UFE4 AC093635.1-201ENST00000609028 555 ntBASIC7.42□□□□□ -1.22
CCDC39Q9UFE4 AC007742.2-201ENST00000618226 398 ntBASIC7.42□□□□□ -1.22
CCDC39Q9UFE4 AC018692.2-201ENST00000624130 348 ntBASIC7.42□□□□□ -1.22
CCDC39Q9UFE4 AC012594.1-272ENST00000625790 710 ntTSL 5 BASIC7.42□□□□□ -1.22
CCDC39Q9UFE4 AC090897.3-201ENST00000636973 1157 ntBASIC7.42□□□□□ -1.22
CCDC39Q9UFE4 CEP128-202ENST00000281129 4461 ntAPPRIS P1 TSL 1 (best) BASIC7.42□□□□□ -1.22
CCDC39Q9UFE4 AL391704.1-201ENST00000422206 2368 ntTSL 1 (best) BASIC7.42□□□□□ -1.22
CCDC39Q9UFE4 TRIM77-201ENST00000398290 1353 ntAPPRIS P1 TSL 5 BASIC7.42□□□□□ -1.22
CCDC39Q9UFE4 AC007255.1-201ENST00000450540 1376 ntTSL 3 BASIC7.42□□□□□ -1.22
CCDC39Q9UFE4 RNF150-202ENST00000420921 3673 ntTSL 2 BASIC7.42□□□□□ -1.22
CCDC39Q9UFE4 MCMDC2-204ENST00000422365 5096 ntAPPRIS P1 TSL 2 BASIC7.42□□□□□ -1.22
CCDC39Q9UFE4 OR52N5-202ENST00000641181 2778 ntAPPRIS P1 BASIC7.42□□□□□ -1.22
CCDC39Q9UFE4 OR8G5-203ENST00000641992 1560 ntAPPRIS P1 BASIC7.42□□□□□ -1.22
CCDC39Q9UFE4 RNASE13-201ENST00000382951 1607 ntAPPRIS P1 TSL 1 (best) BASIC7.41□□□□□ -1.22
CCDC39Q9UFE4 UTP15-208ENST00000543251 4922 ntTSL 2 BASIC7.41□□□□□ -1.22
CCDC39Q9UFE4 KANTR-203ENST00000604062 4251 ntAPPRIS P1 TSL 5 BASIC7.41□□□□□ -1.22
CCDC39Q9UFE4 ERC1-222ENST00000589028 9202 ntAPPRIS P1 TSL 1 (best) BASIC7.41□□□□□ -1.22
CCDC39Q9UFE4 CHD2-215ENST00000628375 3202 ntTSL 5 BASIC7.41□□□□□ -1.22
CCDC39Q9UFE4 AC005725.1-201ENST00000577346 2607 ntBASIC7.41□□□□□ -1.22
CCDC39Q9UFE4 AP002512.4-202ENST00000641599 4530 ntBASIC7.41□□□□□ -1.22
CCDC39Q9UFE4 OR4S2-201ENST00000312422 936 ntAPPRIS P1 BASIC7.41□□□□□ -1.22
CCDC39Q9UFE4 OR4F17-201ENST00000318050 1054 ntAPPRIS P1 BASIC7.41□□□□□ -1.22
CCDC39Q9UFE4 C8orf59-201ENST00000321777 325 ntTSL 1 (best) BASIC7.41□□□□□ -1.22
CCDC39Q9UFE4 OR4F5-201ENST00000335137 1054 ntAPPRIS P1 BASIC7.41□□□□□ -1.22
CCDC39Q9UFE4 Y_RNA.3-201ENST00000362331 103 ntBASIC7.41□□□□□ -1.22
CCDC39Q9UFE4 RNA5SP350-201ENST00000363298 111 ntBASIC7.41□□□□□ -1.22
CCDC39Q9UFE4 GNG5P2-201ENST00000372054 207 ntBASIC7.41□□□□□ -1.22
CCDC39Q9UFE4 MIR431-201ENST00000385266 114 ntBASIC7.41□□□□□ -1.22
CCDC39Q9UFE4 TRAV25-201ENST00000390454 403 ntAPPRIS P1 BASIC7.41□□□□□ -1.22
CCDC39Q9UFE4 RPL23AP17-201ENST00000401064 499 ntBASIC7.41□□□□□ -1.22
CCDC39Q9UFE4 AL023284.3-201ENST00000407767 334 ntBASIC7.41□□□□□ -1.22
CCDC39Q9UFE4 OR52N3P-201ENST00000413417 934 ntBASIC7.41□□□□□ -1.22
CCDC39Q9UFE4 AC013472.2-201ENST00000416226 306 ntTSL 3 BASIC7.41□□□□□ -1.22
CCDC39Q9UFE4 AL359092.1-201ENST00000417156 265 ntBASIC7.41□□□□□ -1.22
CCDC39Q9UFE4 AC009299.3-201ENST00000421122 1072 ntTSL 3 BASIC7.41□□□□□ -1.22
CCDC39Q9UFE4 AL390962.1-201ENST00000421507 526 ntTSL 3 BASIC7.41□□□□□ -1.22
CCDC39Q9UFE4 SLC9B1P4-201ENST00000421957 1288 ntBASIC7.41□□□□□ -1.22
CCDC39Q9UFE4 BBIP1-203ENST00000423273 492 ntTSL 1 (best) BASIC7.41□□□□□ -1.22
CCDC39Q9UFE4 TRBV29OR9-2-201ENST00000427589 333 ntBASIC7.41□□□□□ -1.22
CCDC39Q9UFE4 AC114808.2-201ENST00000428335 536 ntTSL 4 BASIC7.41□□□□□ -1.22
CCDC39Q9UFE4 AL138733.2-201ENST00000431947 804 ntTSL 5 BASIC7.41□□□□□ -1.22
CCDC39Q9UFE4 AC098826.1-201ENST00000433943 471 ntBASIC7.41□□□□□ -1.22
CCDC39Q9UFE4 UBBP5-201ENST00000446970 266 ntBASIC7.41□□□□□ -1.22
CCDC39Q9UFE4 BBIP1-206ENST00000447005 727 ntAPPRIS P1 TSL 2 BASIC7.41□□□□□ -1.22
CCDC39Q9UFE4 AL121578.2-201ENST00000448797 447 ntBASIC7.41□□□□□ -1.22
CCDC39Q9UFE4 AC022080.2-201ENST00000452932 533 ntBASIC7.41□□□□□ -1.22
CCDC39Q9UFE4 AC002075.1-201ENST00000457396 676 ntBASIC7.41□□□□□ -1.22
CCDC39Q9UFE4 RN7SL372P-201ENST00000461982 298 ntBASIC7.41□□□□□ -1.22
CCDC39Q9UFE4 RPL7P16-201ENST00000479738 738 ntBASIC7.41□□□□□ -1.22
CCDC39Q9UFE4 AC138035.1-201ENST00000499986 992 ntTSL 5 BASIC7.41□□□□□ -1.22
CCDC39Q9UFE4 PANCR-201ENST00000503456 493 ntTSL 5 BASIC7.41□□□□□ -1.22
CCDC39Q9UFE4 OSMR-AS1-201ENST00000506463 800 ntTSL 3 BASIC7.41□□□□□ -1.22
CCDC39Q9UFE4 C5orf64-204ENST00000507461 535 ntTSL 4 BASIC7.41□□□□□ -1.22
CCDC39Q9UFE4 AC097501.1-202ENST00000514707 313 ntTSL 3 BASIC7.41□□□□□ -1.22
CCDC39Q9UFE4 RN7SKP196-201ENST00000516267 345 ntBASIC7.41□□□□□ -1.22
CCDC39Q9UFE4 IGLVVII-41-1-201ENST00000518405 151 ntBASIC7.41□□□□□ -1.22
CCDC39Q9UFE4 AC008632.1-202ENST00000518605 452 ntTSL 3 BASIC7.41□□□□□ -1.22
CCDC39Q9UFE4 AC015468.2-201ENST00000519605 550 ntTSL 3 BASIC7.41□□□□□ -1.22
CCDC39Q9UFE4 H2AFV-208ENST00000521529 439 ntTSL 5 BASIC7.41□□□□□ -1.22
CCDC39Q9UFE4 AC008662.1-201ENST00000521805 674 ntTSL 3 BASIC7.41□□□□□ -1.22
CCDC39Q9UFE4 BAALC-AS1-208ENST00000523614 582 ntTSL 5 BASIC7.41□□□□□ -1.22
Retrieved 100 of 98,524 protein–RNA pairs in 91.8 ms