Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 GVINP1-202ENST00000531871 7271 ntBASIC5.55□□□□□ -1.52
CCDC3Q9BQI4 POC1B-201ENST00000313546 3001 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
CCDC3Q9BQI4 OR5M3-201ENST00000312240 1051 ntAPPRIS P1 BASIC5.55□□□□□ -1.52
CCDC3Q9BQI4 NDRG3-201ENST00000349004 2964 ntAPPRIS P4 TSL 1 (best) BASIC5.55□□□□□ -1.52
CCDC3Q9BQI4 IFNA10-201ENST00000357374 963 ntAPPRIS P1 BASIC5.55□□□□□ -1.52
CCDC3Q9BQI4 RNU1-19P-201ENST00000363306 165 ntBASIC5.55□□□□□ -1.52
CCDC3Q9BQI4 RNA5SP131-201ENST00000365452 119 ntBASIC5.55□□□□□ -1.52
CCDC3Q9BQI4 AL451142.1-201ENST00000375867 775 ntBASIC5.55□□□□□ -1.52
CCDC3Q9BQI4 RNU4-34P-201ENST00000410431 124 ntBASIC5.55□□□□□ -1.52
CCDC3Q9BQI4 AF015720.1-201ENST00000412240 349 ntTSL 3 BASIC5.55□□□□□ -1.52
CCDC3Q9BQI4 LINC01203-201ENST00000419566 580 ntTSL 2 BASIC5.55□□□□□ -1.52
CCDC3Q9BQI4 ACAP2-IT1-201ENST00000419899 690 ntTSL 3 BASIC5.55□□□□□ -1.52
CCDC3Q9BQI4 EIF4A1P7-201ENST00000421800 1220 ntBASIC5.55□□□□□ -1.52
CCDC3Q9BQI4 AL133173.1-201ENST00000423458 397 ntBASIC5.55□□□□□ -1.52
CCDC3Q9BQI4 AC244035.2-201ENST00000425896 630 ntTSL 3 BASIC5.55□□□□□ -1.52
CCDC3Q9BQI4 AL008723.2-201ENST00000426354 562 ntTSL 4 BASIC5.55□□□□□ -1.52
CCDC3Q9BQI4 MAGI2-AS3-204ENST00000426835 738 ntTSL 3 BASIC5.55□□□□□ -1.52
CCDC3Q9BQI4 AL021408.1-201ENST00000430428 552 ntTSL 4 BASIC5.55□□□□□ -1.52
CCDC3Q9BQI4 TMEM196-204ENST00000433641 768 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
CCDC3Q9BQI4 ARL4AP4-201ENST00000434170 518 ntBASIC5.55□□□□□ -1.52
CCDC3Q9BQI4 LINC02096-201ENST00000445035 953 ntTSL 5 BASIC5.55□□□□□ -1.52
CCDC3Q9BQI4 LDHBP2-201ENST00000456969 1005 ntBASIC5.55□□□□□ -1.52
CCDC3Q9BQI4 AC011225.1-201ENST00000457751 369 ntBASIC5.55□□□□□ -1.52
CCDC3Q9BQI4 RN7SL570P-201ENST00000484405 292 ntBASIC5.55□□□□□ -1.52
CCDC3Q9BQI4 UBA52P7-201ENST00000486088 380 ntBASIC5.55□□□□□ -1.52
CCDC3Q9BQI4 RPS26P24-201ENST00000497656 331 ntBASIC5.55□□□□□ -1.52
CCDC3Q9BQI4 AC109439.2-201ENST00000502421 564 ntTSL 4 BASIC5.55□□□□□ -1.52
CCDC3Q9BQI4 AC106864.2-201ENST00000505632 740 ntTSL 2 BASIC5.55□□□□□ -1.52
CCDC3Q9BQI4 LINC02278-201ENST00000512170 500 ntTSL 5 BASIC5.55□□□□□ -1.52
CCDC3Q9BQI4 AC116424.1-203ENST00000513940 671 ntTSL 3 BASIC5.55□□□□□ -1.52
CCDC3Q9BQI4 AC008680.1-201ENST00000523398 283 ntTSL 3 BASIC5.55□□□□□ -1.52
CCDC3Q9BQI4 AC113386.1-201ENST00000523584 381 ntTSL 5 BASIC5.55□□□□□ -1.52
CCDC3Q9BQI4 AC244502.2-201ENST00000543361 851 ntBASIC5.55□□□□□ -1.52
CCDC3Q9BQI4 LINC02345-203ENST00000558897 405 ntTSL 3 BASIC5.55□□□□□ -1.52
CCDC3Q9BQI4 AC023389.2-201ENST00000580031 955 ntBASIC5.55□□□□□ -1.52
CCDC3Q9BQI4 FKBP1AP1-201ENST00000594588 318 ntBASIC5.55□□□□□ -1.52
CCDC3Q9BQI4 AC003682.1-201ENST00000599190 462 ntTSL 2 BASIC5.55□□□□□ -1.52
CCDC3Q9BQI4 AL356580.1-201ENST00000604129 159 ntTSL 5 BASIC5.55□□□□□ -1.52
CCDC3Q9BQI4 AC018445.2-201ENST00000622987 260 ntBASIC5.55□□□□□ -1.52
CCDC3Q9BQI4 DARS-AS1-227ENST00000627442 633 ntTSL 5 BASIC5.55□□□□□ -1.52
CCDC3Q9BQI4 LINC01708-202ENST00000634316 859 ntTSL 5 BASIC5.55□□□□□ -1.52
CCDC3Q9BQI4 ASAH1-224ENST00000636269 685 ntTSL 3 BASIC5.55□□□□□ -1.52
CCDC3Q9BQI4 CSNK1G1-204ENST00000606793 1658 ntTSL 5 BASIC5.55□□□□□ -1.52
CCDC3Q9BQI4 IL1R1-202ENST00000409329 1862 ntTSL 5 BASIC5.55□□□□□ -1.52
CCDC3Q9BQI4 C4BPAP1-201ENST00000415474 1893 ntBASIC5.55□□□□□ -1.52
CCDC3Q9BQI4 ZNF568-214ENST00000616085 3542 ntTSL 5 BASIC5.55□□□□□ -1.52
CCDC3Q9BQI4 XRN1-201ENST00000264951 10143 ntAPPRIS P3 TSL 1 (best) BASIC5.55□□□□□ -1.52
CCDC3Q9BQI4 RPL23AP82-206ENST00000480246 2987 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
CCDC3Q9BQI4 MFSD8-219ENST00000641228 2559 ntBASIC5.55□□□□□ -1.52
CCDC3Q9BQI4 TMPRSS15-201ENST00000284885 3947 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
CCDC3Q9BQI4 ATXN7-208ENST00000484332 2741 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
CCDC3Q9BQI4 RXFP1-203ENST00000343542 2130 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
CCDC3Q9BQI4 LRRN3-201ENST00000308478 3099 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
CCDC3Q9BQI4 AL590763.1-201ENST00000398297 1545 ntBASIC5.54□□□□□ -1.52
CCDC3Q9BQI4 NRDC-213ENST00000539524 3417 ntAPPRIS ALT2 TSL 1 (best) BASIC5.54□□□□□ -1.52
CCDC3Q9BQI4 AC117409.1-201ENST00000470499 1310 ntBASIC5.54□□□□□ -1.52
CCDC3Q9BQI4 IGF1-202ENST00000337514 7359 ntAPPRIS P3 TSL 1 (best) BASIC5.54□□□□□ -1.52
CCDC3Q9BQI4 AL161756.3-201ENST00000641216 2071 ntBASIC5.54□□□□□ -1.52
CCDC3Q9BQI4 LINC01091-203ENST00000514823 5262 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
CCDC3Q9BQI4 SLFN13-201ENST00000285013 8469 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
CCDC3Q9BQI4 AC011504.1-201ENST00000623331 4103 ntBASIC5.54□□□□□ -1.52
CCDC3Q9BQI4 TCF4-290ENST00000638154 7801 ntAPPRIS ALT1 TSL 5 BASIC5.54□□□□□ -1.52
CCDC3Q9BQI4 RNA5SP319-201ENST00000362768 119 ntBASIC5.54□□□□□ -1.52
CCDC3Q9BQI4 AL139095.4-201ENST00000379928 500 ntTSL 2 BASIC5.54□□□□□ -1.52
CCDC3Q9BQI4 MIR1286-201ENST00000408112 78 ntBASIC5.54□□□□□ -1.52
CCDC3Q9BQI4 FIGN-202ENST00000409634 746 ntTSL 5 BASIC5.54□□□□□ -1.52
CCDC3Q9BQI4 RNU4-64P-201ENST00000410795 131 ntBASIC5.54□□□□□ -1.52
CCDC3Q9BQI4 ZNF92P1Y-201ENST00000415010 1191 ntBASIC5.54□□□□□ -1.52
CCDC3Q9BQI4 OR5W1P-201ENST00000423705 938 ntBASIC5.54□□□□□ -1.52
CCDC3Q9BQI4 AL021153.1-201ENST00000427360 308 ntTSL 3 BASIC5.54□□□□□ -1.52
CCDC3Q9BQI4 AP000365.1-201ENST00000438850 546 ntTSL 4 BASIC5.54□□□□□ -1.52
CCDC3Q9BQI4 MEMO1P4-201ENST00000453590 386 ntBASIC5.54□□□□□ -1.52
CCDC3Q9BQI4 AC016903.2-201ENST00000456384 326 ntTSL 3 BASIC5.54□□□□□ -1.52
CCDC3Q9BQI4 AC078828.1-201ENST00000471993 458 ntTSL 3 BASIC5.54□□□□□ -1.52
CCDC3Q9BQI4 AK5-208ENST00000478255 556 ntTSL 2 BASIC5.54□□□□□ -1.52
CCDC3Q9BQI4 AC006539.1-201ENST00000481419 501 ntBASIC5.54□□□□□ -1.52
CCDC3Q9BQI4 AC008410.1-201ENST00000483777 339 ntBASIC5.54□□□□□ -1.52
CCDC3Q9BQI4 AC138956.1-201ENST00000508187 504 ntTSL 3 BASIC5.54□□□□□ -1.52
CCDC3Q9BQI4 AC021146.10-201ENST00000515628 706 ntBASIC5.54□□□□□ -1.52
CCDC3Q9BQI4 OR4A6P-201ENST00000534364 970 ntBASIC5.54□□□□□ -1.52
CCDC3Q9BQI4 AC078878.1-201ENST00000539832 958 ntBASIC5.54□□□□□ -1.52
CCDC3Q9BQI4 AC096996.1-201ENST00000563813 325 ntBASIC5.54□□□□□ -1.52
CCDC3Q9BQI4 ZNF667-AS1-207ENST00000592146 668 ntTSL 5 BASIC5.54□□□□□ -1.52
CCDC3Q9BQI4 ZNF649-AS1-201ENST00000600329 579 ntTSL 4 BASIC5.54□□□□□ -1.52
CCDC3Q9BQI4 AL133406.3-201ENST00000606817 541 ntBASIC5.54□□□□□ -1.52
CCDC3Q9BQI4 AL359513.1-201ENST00000614364 557 ntBASIC5.54□□□□□ -1.52
CCDC3Q9BQI4 MILR1-204ENST00000616498 747 ntAPPRIS ALT2 TSL 1 (best) BASIC5.54□□□□□ -1.52
CCDC3Q9BQI4 AC016769.4-201ENST00000616893 535 ntBASIC5.54□□□□□ -1.52
CCDC3Q9BQI4 AL355974.3-201ENST00000617383 467 ntBASIC5.54□□□□□ -1.52
CCDC3Q9BQI4 RDM1-226ENST00000619828 687 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
CCDC3Q9BQI4 AC002429.2-202ENST00000637269 394 ntAPPRIS P1 TSL 3 BASIC5.54□□□□□ -1.52
CCDC3Q9BQI4 CASC19-264ENST00000641912 1184 ntBASIC5.54□□□□□ -1.52
CCDC3Q9BQI4 AC079776.5-201ENST00000641920 211 ntBASIC5.54□□□□□ -1.52
CCDC3Q9BQI4 AC093297.3-201ENST00000607056 2517 ntBASIC5.54□□□□□ -1.52
CCDC3Q9BQI4 AC134980.1-209ENST00000639059 2317 ntTSL 2 BASIC5.54□□□□□ -1.52
CCDC3Q9BQI4 AC004656.1-201ENST00000568479 4951 ntBASIC5.54□□□□□ -1.52
CCDC3Q9BQI4 SH3YL1-203ENST00000403657 3540 ntTSL 2 BASIC5.54□□□□□ -1.52
CCDC3Q9BQI4 CCAR1-217ENST00000543719 3521 ntTSL 5 BASIC5.54□□□□□ -1.52
CCDC3Q9BQI4 MECOM-201ENST00000264674 4900 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
CCDC3Q9BQI4 ZNF493-202ENST00000355504 4386 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 92.4 ms