Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 LINC02412-201ENST00000552584 1269 ntTSL 5 BASIC4.94□□□□□ -1.62
HOXA1P49639 RGS6-215ENST00000554782 1110 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
HOXA1P49639 AL359238.1-201ENST00000557770 744 ntTSL 3 BASIC4.94□□□□□ -1.62
HOXA1P49639 AC012050.1-201ENST00000558185 472 ntTSL 3 BASIC4.94□□□□□ -1.62
HOXA1P49639 AP001007.3-201ENST00000560744 356 ntTSL 5 BASIC4.94□□□□□ -1.62
HOXA1P49639 ZNF322P1-201ENST00000568013 1209 ntBASIC4.94□□□□□ -1.62
HOXA1P49639 AC006504.5-201ENST00000588122 655 ntTSL 5 BASIC4.94□□□□□ -1.62
HOXA1P49639 AC006305.2-201ENST00000589617 552 ntTSL 4 BASIC4.94□□□□□ -1.62
HOXA1P49639 SNORA74.4-201ENST00000607595 199 ntBASIC4.94□□□□□ -1.62
HOXA1P49639 CLK4-214ENST00000611575 1206 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
HOXA1P49639 PRL-202ENST00000615510 1268 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
HOXA1P49639 AL049767.1-201ENST00000636811 514 ntTSL 5 BASIC4.94□□□□□ -1.62
HOXA1P49639 RIF1-203ENST00000428287 7722 ntAPPRIS ALT2 TSL 1 (best) BASIC4.94□□□□□ -1.62
HOXA1P49639 LINC01933-204ENST00000524295 3591 ntTSL 2 BASIC4.94□□□□□ -1.62
HOXA1P49639 AL023755.1-201ENST00000441851 1801 ntTSL 2 BASIC4.94□□□□□ -1.62
HOXA1P49639 LGI1-212ENST00000630184 2936 ntTSL 2 BASIC4.94□□□□□ -1.62
HOXA1P49639 ZNF189-201ENST00000259395 3115 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
HOXA1P49639 ARPP21-202ENST00000396481 1304 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
HOXA1P49639 RUNX1T1-234ENST00000521553 1346 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
HOXA1P49639 RGS22-215ENST00000523437 3975 ntAPPRIS ALT2 TSL 1 (best) BASIC4.94□□□□□ -1.62
HOXA1P49639 WDR12-201ENST00000261015 8100 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
HOXA1P49639 ZNF192P1-201ENST00000440790 1628 ntTSL 5 BASIC4.94□□□□□ -1.62
HOXA1P49639 ZNF610-208ENST00000613461 1643 ntAPPRIS ALT2 TSL 1 (best) BASIC4.94□□□□□ -1.62
HOXA1P49639 RALGAPB-202ENST00000397040 8435 ntAPPRIS P3 TSL 1 (best) BASIC4.94□□□□□ -1.62
HOXA1P49639 RIMS1-205ENST00000414192 1787 ntTSL 2 BASIC4.93□□□□□ -1.62
HOXA1P49639 IL7R-201ENST00000303115 4626 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
HOXA1P49639 FAR2-201ENST00000182377 2095 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
HOXA1P49639 OR8J3-204ENST00000642058 3806 ntAPPRIS P1 BASIC4.93□□□□□ -1.62
HOXA1P49639 CDC5L-201ENST00000371477 6423 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
HOXA1P49639 INTS12-211ENST00000618810 1502 ntAPPRIS P1 TSL 5 BASIC4.93□□□□□ -1.62
HOXA1P49639 RRP15-201ENST00000366932 7771 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
HOXA1P49639 OR5B12-202ENST00000641921 1807 ntAPPRIS P1 BASIC4.93□□□□□ -1.62
HOXA1P49639 RABL3-201ENST00000273375 3883 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
HOXA1P49639 AC091045.1-201ENST00000561460 2277 ntTSL 5 BASIC4.93□□□□□ -1.62
HOXA1P49639 BPIFA2-201ENST00000253362 1122 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
HOXA1P49639 BPIFA2-202ENST00000354932 1047 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
HOXA1P49639 ZNF675-201ENST00000359788 2301 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
HOXA1P49639 RN7SKP185-201ENST00000362813 326 ntBASIC4.93□□□□□ -1.62
HOXA1P49639 RNU6-792P-201ENST00000363490 107 ntBASIC4.93□□□□□ -1.62
HOXA1P49639 AC012358.1-201ENST00000366153 916 ntTSL 3 BASIC4.93□□□□□ -1.62
HOXA1P49639 ATP5EP2-201ENST00000381026 385 ntAPPRIS P1 BASIC4.93□□□□□ -1.62
HOXA1P49639 AC026310.1-201ENST00000396004 378 ntBASIC4.93□□□□□ -1.62
HOXA1P49639 SPINK5-203ENST00000398454 2915 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
HOXA1P49639 ATP5F1P6-201ENST00000402768 767 ntBASIC4.93□□□□□ -1.62
HOXA1P49639 AL137847.1-201ENST00000416473 444 ntTSL 2 BASIC4.93□□□□□ -1.62
HOXA1P49639 MTND4P11-201ENST00000417020 1058 ntBASIC4.93□□□□□ -1.62
HOXA1P49639 OSBPL10-AS1-202ENST00000418728 458 ntTSL 5 BASIC4.93□□□□□ -1.62
HOXA1P49639 ARL2BPP3-201ENST00000421226 480 ntBASIC4.93□□□□□ -1.62
HOXA1P49639 MIR646HG-202ENST00000426753 651 ntTSL 2 BASIC4.93□□□□□ -1.62
HOXA1P49639 AL354714.4-201ENST00000427339 575 ntTSL 3 BASIC4.93□□□□□ -1.62
HOXA1P49639 SPATA13-AS1-201ENST00000430733 433 ntTSL 3 BASIC4.93□□□□□ -1.62
HOXA1P49639 AC106874.1-201ENST00000440495 646 ntTSL 3 BASIC4.93□□□□□ -1.62
HOXA1P49639 AC091976.1-201ENST00000458002 448 ntTSL 3 BASIC4.93□□□□□ -1.62
HOXA1P49639 RN7SL515P-201ENST00000463999 297 ntBASIC4.93□□□□□ -1.62
HOXA1P49639 SEPT7P9-201ENST00000475691 413 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
HOXA1P49639 RN7SL326P-201ENST00000477493 296 ntBASIC4.93□□□□□ -1.62
HOXA1P49639 AC093663.2-201ENST00000484625 313 ntBASIC4.93□□□□□ -1.62
HOXA1P49639 RPL5P33-201ENST00000487833 905 ntBASIC4.93□□□□□ -1.62
HOXA1P49639 CT45A5-201ENST00000487941 1161 ntAPPRIS P1 TSL 2 BASIC4.93□□□□□ -1.62
HOXA1P49639 LINC02358-201ENST00000514413 465 ntTSL 5 BASIC4.93□□□□□ -1.62
HOXA1P49639 AC107391.1-201ENST00000514966 412 ntTSL 2 BASIC4.93□□□□□ -1.62
HOXA1P49639 SNORA76.2-201ENST00000517095 137 ntBASIC4.93□□□□□ -1.62
HOXA1P49639 ATP6V0E1-202ENST00000517669 502 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
HOXA1P49639 TPM3P3-201ENST00000521343 354 ntBASIC4.93□□□□□ -1.62
HOXA1P49639 AC013714.1-201ENST00000524707 747 ntTSL 3 BASIC4.93□□□□□ -1.62
HOXA1P49639 AP003386.1-201ENST00000526509 504 ntTSL 3 BASIC4.93□□□□□ -1.62
HOXA1P49639 OR9G2P-201ENST00000533326 880 ntBASIC4.93□□□□□ -1.62
HOXA1P49639 OR8X1P-201ENST00000534542 869 ntBASIC4.93□□□□□ -1.62
HOXA1P49639 AC105243.1-201ENST00000563172 1165 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
HOXA1P49639 AC005632.2-201ENST00000564271 828 ntBASIC4.93□□□□□ -1.62
HOXA1P49639 LINC02520-201ENST00000570443 537 ntTSL 4 BASIC4.93□□□□□ -1.62
HOXA1P49639 AC093484.5-201ENST00000585048 304 ntTSL 3 BASIC4.93□□□□□ -1.62
HOXA1P49639 DARS-AS1-217ENST00000599279 544 ntTSL 5 BASIC4.93□□□□□ -1.62
HOXA1P49639 AC008750.7-201ENST00000600765 559 ntTSL 4 BASIC4.93□□□□□ -1.62
HOXA1P49639 ZNF677-211ENST00000601828 719 ntTSL 2 BASIC4.93□□□□□ -1.62
HOXA1P49639 AL591222.2-201ENST00000604443 754 ntBASIC4.93□□□□□ -1.62
HOXA1P49639 AL158050.2-201ENST00000605336 568 ntBASIC4.93□□□□□ -1.62
HOXA1P49639 AC004775.1-201ENST00000607389 753 ntBASIC4.93□□□□□ -1.62
HOXA1P49639 AC017076.1-201ENST00000607613 578 ntBASIC4.93□□□□□ -1.62
HOXA1P49639 AC097504.2-201ENST00000608088 454 ntBASIC4.93□□□□□ -1.62
HOXA1P49639 AF129408.1-201ENST00000608767 431 ntBASIC4.93□□□□□ -1.62
HOXA1P49639 AC027449.1-201ENST00000608890 407 ntBASIC4.93□□□□□ -1.62
HOXA1P49639 OR1N2-202ENST00000616791 993 ntAPPRIS P2 BASIC4.93□□□□□ -1.62
HOXA1P49639 GXYLT1P5-202ENST00000618830 589 ntTSL 5 BASIC4.93□□□□□ -1.62
HOXA1P49639 BRCC3-209ENST00000620502 882 ntAPPRIS ALT2 TSL 5 BASIC4.93□□□□□ -1.62
HOXA1P49639 AL137067.2-201ENST00000621202 131 ntBASIC4.93□□□□□ -1.62
HOXA1P49639 AL138955.1-201ENST00000622881 1040 ntBASIC4.93□□□□□ -1.62
HOXA1P49639 LINC01620-204ENST00000623295 700 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
HOXA1P49639 AC090506.2-201ENST00000624521 419 ntBASIC4.93□□□□□ -1.62
HOXA1P49639 AC099329.1-203ENST00000629885 767 ntTSL 5 BASIC4.93□□□□□ -1.62
HOXA1P49639 OR10G7-202ENST00000641585 3449 ntAPPRIS P1 BASIC4.93□□□□□ -1.62
HOXA1P49639 NDRG3-201ENST00000349004 2964 ntAPPRIS P4 TSL 1 (best) BASIC4.93□□□□□ -1.62
HOXA1P49639 STAMBPL1-202ENST00000371924 2208 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
HOXA1P49639 MEG8-223ENST00000638012 3757 ntTSL 5 BASIC4.93□□□□□ -1.62
HOXA1P49639 FAM135A-202ENST00000361499 5042 ntAPPRIS ALT1 TSL 1 (best) BASIC4.93□□□□□ -1.62
HOXA1P49639 AC006288.1-201ENST00000565320 1463 ntTSL 3 BASIC4.93□□□□□ -1.62
HOXA1P49639 KCNJ16-202ENST00000392670 4009 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
HOXA1P49639 NBPF10-202ENST00000617010 11630 ntTSL 5 BASIC4.93□□□□□ -1.62
HOXA1P49639 ELF2-203ENST00000379550 3278 ntTSL 5 BASIC4.92□□□□□ -1.62
HOXA1P49639 LTA4H-209ENST00000552789 2025 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
Retrieved 100 of 98,524 protein–RNA pairs in 95.3 ms