Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 UGT2A2-202ENST00000604629 1676 ntAPPRIS P1 TSL 1 (best) BASIC10.57□□□□□ -0.72
SHROOM4Q9ULL8 SPARCL1-202ENST00000418378 2994 ntAPPRIS P1 TSL 5 BASIC10.57□□□□□ -0.72
SHROOM4Q9ULL8 AC006145.1-201ENST00000439234 2651 ntTSL 2 BASIC10.57□□□□□ -0.72
SHROOM4Q9ULL8 IKZF3-202ENST00000346243 1296 ntTSL 5 BASIC10.57□□□□□ -0.72
SHROOM4Q9ULL8 RNA5-8SP5-201ENST00000365304 152 ntBASIC10.57□□□□□ -0.72
SHROOM4Q9ULL8 DSTNP5-201ENST00000427921 523 ntBASIC10.57□□□□□ -0.72
SHROOM4Q9ULL8 IKZF3-212ENST00000439016 1246 ntTSL 5 BASIC10.57□□□□□ -0.72
SHROOM4Q9ULL8 TPT1P13-201ENST00000449760 499 ntBASIC10.57□□□□□ -0.72
SHROOM4Q9ULL8 AC018709.1-201ENST00000509111 700 ntAPPRIS P1 TSL 3 BASIC10.57□□□□□ -0.72
SHROOM4Q9ULL8 KLRC1-204ENST00000536188 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC10.57□□□□□ -0.72
SHROOM4Q9ULL8 AC092112.1-201ENST00000538329 640 ntTSL 3 BASIC10.57□□□□□ -0.72
SHROOM4Q9ULL8 AC139697.1-201ENST00000548429 745 ntBASIC10.57□□□□□ -0.72
SHROOM4Q9ULL8 AC008056.2-201ENST00000553812 551 ntTSL 5 BASIC10.57□□□□□ -0.72
SHROOM4Q9ULL8 AC087286.2-201ENST00000558980 660 ntTSL 3 BASIC10.57□□□□□ -0.72
SHROOM4Q9ULL8 DARS-AS1-211ENST00000595061 720 ntTSL 5 BASIC10.57□□□□□ -0.72
SHROOM4Q9ULL8 AC018695.3-201ENST00000602617 408 ntTSL 2 BASIC10.57□□□□□ -0.72
SHROOM4Q9ULL8 AC005084.1-201ENST00000605160 304 ntBASIC10.57□□□□□ -0.72
SHROOM4Q9ULL8 AL354950.1-201ENST00000614150 568 ntBASIC10.57□□□□□ -0.72
SHROOM4Q9ULL8 MVP-219ENST00000629059 120 ntTSL 5 BASIC10.57□□□□□ -0.72
SHROOM4Q9ULL8 FAM229B-201ENST00000368656 2543 ntAPPRIS P1 TSL 1 (best) BASIC10.57□□□□□ -0.72
SHROOM4Q9ULL8 CPED1-203ENST00000423795 2189 ntTSL 1 (best) BASIC10.57□□□□□ -0.72
SHROOM4Q9ULL8 VNN3-207ENST00000425515 1761 ntTSL 1 (best) BASIC10.57□□□□□ -0.72
SHROOM4Q9ULL8 CKAP2-207ENST00000490903 3395 ntAPPRIS ALT2 TSL 2 BASIC10.57□□□□□ -0.72
SHROOM4Q9ULL8 MDM4-207ENST00000454264 9926 ntTSL 1 (best) BASIC10.57□□□□□ -0.72
SHROOM4Q9ULL8 NOSTRIN-201ENST00000317647 2294 ntAPPRIS P1 TSL 1 (best) BASIC10.57□□□□□ -0.72
SHROOM4Q9ULL8 CSPP1-201ENST00000262210 4367 ntAPPRIS P3 TSL 1 (best) BASIC10.57□□□□□ -0.72
SHROOM4Q9ULL8 FYB1-204ENST00000505428 2789 ntAPPRIS ALT2 TSL 1 (best) BASIC10.56□□□□□ -0.72
SHROOM4Q9ULL8 LINC02466-201ENST00000500092 1963 ntTSL 1 (best) BASIC10.56□□□□□ -0.72
SHROOM4Q9ULL8 AL626787.1-201ENST00000366136 594 ntTSL 4 BASIC10.56□□□□□ -0.72
SHROOM4Q9ULL8 SNORA67-201ENST00000384423 137 ntBASIC10.56□□□□□ -0.72
SHROOM4Q9ULL8 TRAJ58-201ENST00000390481 63 ntAPPRIS P1 BASIC10.56□□□□□ -0.72
SHROOM4Q9ULL8 SNORA81-201ENST00000408493 178 ntBASIC10.56□□□□□ -0.72
SHROOM4Q9ULL8 AL445190.1-201ENST00000416448 288 ntTSL 5 BASIC10.56□□□□□ -0.72
SHROOM4Q9ULL8 AC104462.2-201ENST00000418402 271 ntTSL 3 BASIC10.56□□□□□ -0.72
SHROOM4Q9ULL8 AK3P5-201ENST00000432033 519 ntBASIC10.56□□□□□ -0.72
SHROOM4Q9ULL8 USP24P1-201ENST00000433802 779 ntBASIC10.56□□□□□ -0.72
SHROOM4Q9ULL8 AC073648.4-201ENST00000442655 781 ntBASIC10.56□□□□□ -0.72
SHROOM4Q9ULL8 AC092647.3-201ENST00000443044 633 ntBASIC10.56□□□□□ -0.72
SHROOM4Q9ULL8 OSTCP1-201ENST00000455507 450 ntBASIC10.56□□□□□ -0.72
SHROOM4Q9ULL8 RN7SL738P-201ENST00000470264 297 ntBASIC10.56□□□□□ -0.72
SHROOM4Q9ULL8 AC092590.1-201ENST00000471672 737 ntTSL 3 BASIC10.56□□□□□ -0.72
SHROOM4Q9ULL8 AC090114.3-201ENST00000479267 829 ntBASIC10.56□□□□□ -0.72
SHROOM4Q9ULL8 AC025423.4-201ENST00000553141 785 ntTSL 3 BASIC10.56□□□□□ -0.72
SHROOM4Q9ULL8 LINC00871-201ENST00000555246 408 ntTSL 5 BASIC10.56□□□□□ -0.72
SHROOM4Q9ULL8 AC016229.2-201ENST00000591331 417 ntTSL 2 BASIC10.56□□□□□ -0.72
SHROOM4Q9ULL8 AC024563.1-201ENST00000601860 618 ntTSL 2 BASIC10.56□□□□□ -0.72
SHROOM4Q9ULL8 AC090607.5-201ENST00000615692 224 ntBASIC10.56□□□□□ -0.72
SHROOM4Q9ULL8 AC132825.8-201ENST00000640783 297 ntBASIC10.56□□□□□ -0.72
SHROOM4Q9ULL8 GAS1RR-201ENST00000415801 4387 ntTSL 1 (best) BASIC10.56□□□□□ -0.72
SHROOM4Q9ULL8 PCLO-203ENST00000423517 17147 ntTSL 5 BASIC10.56□□□□□ -0.72
SHROOM4Q9ULL8 BIRC6-201ENST00000421745 15703 ntAPPRIS P1 TSL 1 (best) BASIC10.56□□□□□ -0.72
SHROOM4Q9ULL8 GBA3-206ENST00000610628 2154 ntAPPRIS ALT2 TSL 5 BASIC10.56□□□□□ -0.72
SHROOM4Q9ULL8 DCN-202ENST00000393155 2133 ntAPPRIS P1 TSL 1 (best) BASIC10.56□□□□□ -0.72
SHROOM4Q9ULL8 ZNF432-202ENST00000594154 4513 ntAPPRIS P1 TSL 1 (best) BASIC10.56□□□□□ -0.72
SHROOM4Q9ULL8 AC068870.1-201ENST00000563737 2455 ntBASIC10.56□□□□□ -0.72
SHROOM4Q9ULL8 CCDC186-203ENST00000369287 7245 ntAPPRIS P1 TSL 1 (best) BASIC10.56□□□□□ -0.72
SHROOM4Q9ULL8 WBP11P1-201ENST00000562560 1931 ntBASIC10.56□□□□□ -0.72
SHROOM4Q9ULL8 CD164-207ENST00000504373 1402 ntTSL 1 (best) BASIC10.56□□□□□ -0.72
SHROOM4Q9ULL8 ATF7IP2-204ENST00000396560 3665 ntAPPRIS P1 TSL 1 (best) BASIC10.56□□□□□ -0.72
SHROOM4Q9ULL8 AP004289.1-201ENST00000436307 2205 ntBASIC10.56□□□□□ -0.72
SHROOM4Q9ULL8 YPEL5-204ENST00000402003 2197 ntAPPRIS P1 TSL 2 BASIC10.56□□□□□ -0.72
SHROOM4Q9ULL8 SNORA17.1-201ENST00000362945 126 ntBASIC10.55□□□□□ -0.72
SHROOM4Q9ULL8 RN7SKP113-201ENST00000363891 295 ntBASIC10.55□□□□□ -0.72
SHROOM4Q9ULL8 SNORA70H-201ENST00000383910 135 ntBASIC10.55□□□□□ -0.72
SHROOM4Q9ULL8 SNORA70J-201ENST00000384182 135 ntBASIC10.55□□□□□ -0.72
SHROOM4Q9ULL8 AL139350.1-201ENST00000448825 408 ntTSL 3 BASIC10.55□□□□□ -0.72
SHROOM4Q9ULL8 AC115989.1-202ENST00000452153 1150 ntTSL 2 BASIC10.55□□□□□ -0.72
SHROOM4Q9ULL8 LINC01436-201ENST00000457157 1048 ntTSL 2 BASIC10.55□□□□□ -0.72
SHROOM4Q9ULL8 AC096741.1-201ENST00000472250 846 ntBASIC10.55□□□□□ -0.72
SHROOM4Q9ULL8 AP002815.1-201ENST00000533740 386 ntTSL 3 BASIC10.55□□□□□ -0.72
SHROOM4Q9ULL8 AC114947.2-201ENST00000565748 2125 ntBASIC10.55□□□□□ -0.72
SHROOM4Q9ULL8 RBM22P1-201ENST00000578589 1214 ntBASIC10.55□□□□□ -0.72
SHROOM4Q9ULL8 AC002128.2-201ENST00000604161 618 ntTSL 5 BASIC10.55□□□□□ -0.72
SHROOM4Q9ULL8 TEX41-254ENST00000626394 423 ntTSL 5 BASIC10.55□□□□□ -0.72
SHROOM4Q9ULL8 SIAH1-202ENST00000380006 3352 ntAPPRIS P3 BASIC10.55□□□□□ -0.72
SHROOM4Q9ULL8 ALG2-202ENST00000319033 1627 ntTSL 1 (best) BASIC10.55□□□□□ -0.72
SHROOM4Q9ULL8 SPATA31D5P-202ENST00000527857 4863 ntTSL 1 (best) BASIC10.55□□□□□ -0.72
SHROOM4Q9ULL8 ZNF528-203ENST00000391788 4209 ntTSL 2 BASIC10.55□□□□□ -0.72
SHROOM4Q9ULL8 AL627309.5-201ENST00000484859 4860 ntTSL 5 BASIC10.55□□□□□ -0.72
SHROOM4Q9ULL8 LRRFIP2-201ENST00000336686 3208 ntTSL 1 (best) BASIC10.55□□□□□ -0.72
SHROOM4Q9ULL8 AL731532.1-201ENST00000623972 4236 ntBASIC10.55□□□□□ -0.72
SHROOM4Q9ULL8 ZNF273-204ENST00000476120 2000 ntAPPRIS P1 TSL 3 BASIC10.55□□□□□ -0.72
SHROOM4Q9ULL8 NALCN-201ENST00000251127 6818 ntAPPRIS P1 TSL 1 (best) BASIC10.55□□□□□ -0.72
SHROOM4Q9ULL8 IREB2-201ENST00000258886 6354 ntAPPRIS P1 TSL 1 (best) BASIC10.55□□□□□ -0.72
SHROOM4Q9ULL8 OR9A2-201ENST00000350513 1038 ntAPPRIS P1 BASIC10.55□□□□□ -0.72
SHROOM4Q9ULL8 DEFB113-201ENST00000398718 249 ntAPPRIS P1 TSL 1 (best) BASIC10.55□□□□□ -0.72
SHROOM4Q9ULL8 AC104837.2-201ENST00000427236 424 ntBASIC10.55□□□□□ -0.72
SHROOM4Q9ULL8 AL365220.1-201ENST00000432923 399 ntBASIC10.55□□□□□ -0.72
SHROOM4Q9ULL8 AC092106.1-201ENST00000444291 373 ntBASIC10.55□□□□□ -0.72
SHROOM4Q9ULL8 BIRC6-AS1-201ENST00000455572 697 ntTSL 3 BASIC10.55□□□□□ -0.72
SHROOM4Q9ULL8 IGHVIII-76-1-201ENST00000523776 286 ntBASIC10.55□□□□□ -0.72
SHROOM4Q9ULL8 SRD5A3-AS1-204ENST00000592823 542 ntTSL 5 BASIC10.55□□□□□ -0.72
SHROOM4Q9ULL8 SAMD9L-209ENST00000610760 1221 ntTSL 1 (best) BASIC10.55□□□□□ -0.72
SHROOM4Q9ULL8 MIR325HG-202ENST00000626832 598 ntTSL 4 BASIC10.55□□□□□ -0.72
SHROOM4Q9ULL8 TMED10-201ENST00000303575 4127 ntAPPRIS P1 TSL 1 (best) BASIC10.55□□□□□ -0.72
SHROOM4Q9ULL8 ZBTB8B-201ENST00000609129 12834 ntAPPRIS P1 TSL 5 BASIC10.55□□□□□ -0.72
SHROOM4Q9ULL8 EPC2-201ENST00000258484 3649 ntAPPRIS P1 TSL 1 (best) BASIC10.54□□□□□ -0.72
SHROOM4Q9ULL8 CLASP2-205ENST00000461133 4814 ntTSL 5 BASIC10.54□□□□□ -0.72
SHROOM4Q9ULL8 LRRC49-223ENST00000560369 2586 ntAPPRIS ALT1 TSL 2 BASIC10.54□□□□□ -0.72
SHROOM4Q9ULL8 ATP6V1A-201ENST00000273398 4591 ntAPPRIS P1 TSL 1 (best) BASIC10.54□□□□□ -0.72
Retrieved 100 of 98,524 protein–RNA pairs in 112.6 ms