Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 RNU6-1334P-201ENST00000516032 105 ntBASIC5.59□□□□□ -1.51
CCDC3Q9BQI4 MIR2117-201ENST00000516780 80 ntBASIC5.59□□□□□ -1.51
CCDC3Q9BQI4 AC021678.3-201ENST00000517893 476 ntBASIC5.59□□□□□ -1.51
CCDC3Q9BQI4 POLR2K-203ENST00000522439 543 ntTSL 2 BASIC5.59□□□□□ -1.51
CCDC3Q9BQI4 AC111149.1-201ENST00000522560 343 ntTSL 3 BASIC5.59□□□□□ -1.51
CCDC3Q9BQI4 AC012613.1-201ENST00000522685 387 ntTSL 2 BASIC5.59□□□□□ -1.51
CCDC3Q9BQI4 LINC01947-201ENST00000523742 566 ntTSL 4 BASIC5.59□□□□□ -1.51
CCDC3Q9BQI4 KLRC1-204ENST00000536188 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC5.59□□□□□ -1.51
CCDC3Q9BQI4 AC011468.1-201ENST00000569091 675 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
CCDC3Q9BQI4 PSMG2-204ENST00000585331 983 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
CCDC3Q9BQI4 AL589935.1-223ENST00000587015 808 ntTSL 5 BASIC5.59□□□□□ -1.51
CCDC3Q9BQI4 AC098617.1-205ENST00000595918 1032 ntTSL 5 BASIC5.59□□□□□ -1.51
CCDC3Q9BQI4 UBA52-209ENST00000597451 514 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
CCDC3Q9BQI4 AC007204.2-201ENST00000615022 616 ntBASIC5.59□□□□□ -1.51
CCDC3Q9BQI4 MAPK10-350ENST00000641777 965 ntBASIC5.59□□□□□ -1.51
CCDC3Q9BQI4 RAB30-214ENST00000534141 3746 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
CCDC3Q9BQI4 MELK-210ENST00000543751 2400 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
CCDC3Q9BQI4 ARPP19-208ENST00000566423 5362 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
CCDC3Q9BQI4 NFE2L2-206ENST00000446151 2399 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
CCDC3Q9BQI4 NCOA1-206ENST00000407230 4745 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
CCDC3Q9BQI4 PHC3-214ENST00000494943 5030 ntTSL 1 (best) BASIC5.59□□□□□ -1.52
CCDC3Q9BQI4 VPS13C-204ENST00000395898 11012 ntAPPRIS ALT2 TSL 1 (best) BASIC5.59□□□□□ -1.52
CCDC3Q9BQI4 NOSTRIN-207ENST00000445023 1569 ntTSL 1 (best) BASIC5.59□□□□□ -1.52
CCDC3Q9BQI4 PHC3-203ENST00000467570 2595 ntTSL 2 BASIC5.59□□□□□ -1.52
CCDC3Q9BQI4 CASP1-215ENST00000533400 2001 ntAPPRIS P4 TSL 1 (best) BASIC5.58□□□□□ -1.52
CCDC3Q9BQI4 AC034229.2-201ENST00000566945 2508 ntBASIC5.58□□□□□ -1.52
CCDC3Q9BQI4 DCAF8L1-201ENST00000441525 3457 ntAPPRIS P1 BASIC5.58□□□□□ -1.52
CCDC3Q9BQI4 CTAGE5-217ENST00000557038 2869 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
CCDC3Q9BQI4 SAMD13-201ENST00000370668 1403 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
CCDC3Q9BQI4 UGT2A1-206ENST00000514019 2376 ntTSL 2 BASIC5.58□□□□□ -1.52
CCDC3Q9BQI4 FBXO9-201ENST00000244426 4559 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
CCDC3Q9BQI4 PARP8-212ENST00000505697 2747 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
CCDC3Q9BQI4 AL136985.3-202ENST00000636386 2708 ntTSL 5 BASIC5.58□□□□□ -1.52
CCDC3Q9BQI4 AC098679.1-203ENST00000505532 2227 ntTSL 2 BASIC5.58□□□□□ -1.52
CCDC3Q9BQI4 NSD1-204ENST00000439151 12892 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
CCDC3Q9BQI4 IFIT2-201ENST00000371826 3489 ntAPPRIS P2 TSL 1 (best) BASIC5.58□□□□□ -1.52
CCDC3Q9BQI4 GNG2-212ENST00000556752 3424 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
CCDC3Q9BQI4 AL159987.1-201ENST00000347911 293 ntBASIC5.58□□□□□ -1.52
CCDC3Q9BQI4 RNA5SP514-201ENST00000363717 111 ntBASIC5.58□□□□□ -1.52
CCDC3Q9BQI4 HIST1H3PS1-201ENST00000404612 417 ntBASIC5.58□□□□□ -1.52
CCDC3Q9BQI4 AC099654.1-202ENST00000415836 564 ntTSL 4 BASIC5.58□□□□□ -1.52
CCDC3Q9BQI4 RPL23AP18-201ENST00000416139 468 ntBASIC5.58□□□□□ -1.52
CCDC3Q9BQI4 AC017078.1-201ENST00000416146 368 ntBASIC5.58□□□□□ -1.52
CCDC3Q9BQI4 AC004882.2-201ENST00000420180 244 ntTSL 5 BASIC5.58□□□□□ -1.52
CCDC3Q9BQI4 AL353693.1-201ENST00000429567 442 ntTSL 3 BASIC5.58□□□□□ -1.52
CCDC3Q9BQI4 UBE2L5P-201ENST00000436446 465 ntAPPRIS P1 BASIC5.58□□□□□ -1.52
CCDC3Q9BQI4 FOCAD-AS1-201ENST00000439876 359 ntTSL 2 BASIC5.58□□□□□ -1.52
CCDC3Q9BQI4 AC003685.1-201ENST00000440430 466 ntTSL 2 BASIC5.58□□□□□ -1.52
CCDC3Q9BQI4 AL450996.1-201ENST00000445574 1202 ntBASIC5.58□□□□□ -1.52
CCDC3Q9BQI4 OSTCP1-201ENST00000455507 450 ntBASIC5.58□□□□□ -1.52
CCDC3Q9BQI4 AC068633.1-202ENST00000476460 458 ntTSL 2 BASIC5.58□□□□□ -1.52
CCDC3Q9BQI4 C21orf62-202ENST00000479548 964 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
CCDC3Q9BQI4 OR2A3P-201ENST00000493774 953 ntBASIC5.58□□□□□ -1.52
CCDC3Q9BQI4 AC007370.1-201ENST00000503163 316 ntTSL 2 BASIC5.58□□□□□ -1.52
CCDC3Q9BQI4 AC106732.1-201ENST00000512458 550 ntTSL 4 BASIC5.58□□□□□ -1.52
CCDC3Q9BQI4 AC140125.1-201ENST00000515739 684 ntTSL 5 BASIC5.58□□□□□ -1.52
CCDC3Q9BQI4 RN7SKP67-201ENST00000515905 235 ntBASIC5.58□□□□□ -1.52
CCDC3Q9BQI4 AC139365.2-201ENST00000517972 253 ntBASIC5.58□□□□□ -1.52
CCDC3Q9BQI4 WASHC5-AS1-201ENST00000519140 587 ntTSL 4 BASIC5.58□□□□□ -1.52
CCDC3Q9BQI4 AC100802.1-201ENST00000519197 1026 ntTSL 3 BASIC5.58□□□□□ -1.52
CCDC3Q9BQI4 AC025370.1-201ENST00000523775 583 ntTSL 5 BASIC5.58□□□□□ -1.52
CCDC3Q9BQI4 AC090424.1-201ENST00000535243 736 ntBASIC5.58□□□□□ -1.52
CCDC3Q9BQI4 DCN-210ENST00000547568 823 ntTSL 3 BASIC5.58□□□□□ -1.52
CCDC3Q9BQI4 AL157756.1-203ENST00000553269 600 ntTSL 3 BASIC5.58□□□□□ -1.52
CCDC3Q9BQI4 MIR1269B-201ENST00000580405 75 ntBASIC5.58□□□□□ -1.52
CCDC3Q9BQI4 AC092944.2-201ENST00000605443 889 ntBASIC5.58□□□□□ -1.52
CCDC3Q9BQI4 AL118556.2-201ENST00000614375 824 ntBASIC5.58□□□□□ -1.52
CCDC3Q9BQI4 AC004808.2-201ENST00000627965 773 ntBASIC5.58□□□□□ -1.52
CCDC3Q9BQI4 WDR72-203ENST00000557913 5900 ntAPPRIS ALT1 TSL 5 BASIC5.58□□□□□ -1.52
CCDC3Q9BQI4 GTF2IP4-201ENST00000453092 2054 ntBASIC5.58□□□□□ -1.52
CCDC3Q9BQI4 ETV1-208ENST00000420159 6231 ntTSL 2 BASIC5.58□□□□□ -1.52
CCDC3Q9BQI4 MYO5A-201ENST00000356338 11971 ntAPPRIS ALT1 TSL 1 (best) BASIC5.58□□□□□ -1.52
CCDC3Q9BQI4 KLHL41-201ENST00000284669 2464 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
CCDC3Q9BQI4 INSL4-201ENST00000239316 1952 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
CCDC3Q9BQI4 FYB2-201ENST00000343433 3135 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
CCDC3Q9BQI4 LINC01204-202ENST00000435394 2214 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
CCDC3Q9BQI4 IMMTP1-201ENST00000435590 2219 ntBASIC5.58□□□□□ -1.52
CCDC3Q9BQI4 TCF7L2-222ENST00000627217 3680 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
CCDC3Q9BQI4 CPA3-201ENST00000296046 1795 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
CCDC3Q9BQI4 PKIA-201ENST00000352966 1736 ntAPPRIS P1 TSL 2 BASIC5.57□□□□□ -1.52
CCDC3Q9BQI4 LRRC37B-204ENST00000543378 3091 ntAPPRIS ALT2 TSL 2 BASIC5.57□□□□□ -1.52
CCDC3Q9BQI4 ZNF343-207ENST00000612935 3675 ntAPPRIS ALT2 TSL 5 BASIC5.57□□□□□ -1.52
CCDC3Q9BQI4 ADAMDEC1-201ENST00000256412 2348 ntAPPRIS P3 TSL 1 (best) BASIC5.57□□□□□ -1.52
CCDC3Q9BQI4 ZNF224-201ENST00000336976 3980 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
CCDC3Q9BQI4 PRLR-203ENST00000348262 1339 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
CCDC3Q9BQI4 RANBP3L-202ENST00000502994 2278 ntAPPRIS ALT1 TSL 2 BASIC5.57□□□□□ -1.52
CCDC3Q9BQI4 HNMT-203ENST00000329366 835 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
CCDC3Q9BQI4 UQCR10-201ENST00000330029 916 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
CCDC3Q9BQI4 SNORA70.9-201ENST00000384370 135 ntBASIC5.57□□□□□ -1.52
CCDC3Q9BQI4 AL359636.2-201ENST00000412262 259 ntTSL 3 BASIC5.57□□□□□ -1.52
CCDC3Q9BQI4 AL049812.3-201ENST00000412348 417 ntTSL 3 BASIC5.57□□□□□ -1.52
CCDC3Q9BQI4 AC011752.1-203ENST00000417609 582 ntTSL 2 BASIC5.57□□□□□ -1.52
CCDC3Q9BQI4 AC019205.1-201ENST00000421830 730 ntBASIC5.57□□□□□ -1.52
CCDC3Q9BQI4 TXNIP-201ENST00000425134 1225 ntTSL 2 BASIC5.57□□□□□ -1.52
CCDC3Q9BQI4 MKLN1-204ENST00000429546 572 ntTSL 4 BASIC5.57□□□□□ -1.52
CCDC3Q9BQI4 ALG13-AS1-201ENST00000430794 195 ntTSL 5 BASIC5.57□□□□□ -1.52
CCDC3Q9BQI4 AC074011.1-201ENST00000431376 581 ntTSL 4 BASIC5.57□□□□□ -1.52
CCDC3Q9BQI4 AL109807.1-201ENST00000438222 569 ntTSL 3 BASIC5.57□□□□□ -1.52
CCDC3Q9BQI4 NPSR1-AS1-206ENST00000439852 710 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
CCDC3Q9BQI4 AL606490.1-201ENST00000452266 765 ntBASIC5.57□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 92.1 ms