Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 RABL3-201ENST00000273375 3883 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
NKX3-1Q99801 ING3-204ENST00000431467 1447 ntTSL 2 BASIC5.04□□□□□ -1.6
NKX3-1Q99801 LINC00615-201ENST00000546725 1406 ntTSL 2 BASIC5.04□□□□□ -1.6
NKX3-1Q99801 DDAH1-204ENST00000535924 3909 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
NKX3-1Q99801 MUT-201ENST00000274813 3749 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
NKX3-1Q99801 TEK-205ENST00000615002 4666 ntTSL 5 BASIC5.03□□□□□ -1.6
NKX3-1Q99801 TNRC6B-206ENST00000454349 18279 ntAPPRIS ALT2 TSL 2 BASIC5.03□□□□□ -1.6
NKX3-1Q99801 RRM1-201ENST00000300738 3076 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
NKX3-1Q99801 RFFL-202ENST00000394597 4227 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
NKX3-1Q99801 NELL2-205ENST00000452445 3196 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
NKX3-1Q99801 MBNL2-204ENST00000397601 4487 ntTSL 5 BASIC5.03□□□□□ -1.6
NKX3-1Q99801 PRIM2-201ENST00000274891 864 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
NKX3-1Q99801 TSLP-201ENST00000344895 736 ntAPPRIS P2 TSL 1 (best) BASIC5.03□□□□□ -1.6
NKX3-1Q99801 SPINK14-201ENST00000356972 294 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
NKX3-1Q99801 PEX12P1-201ENST00000400284 1048 ntBASIC5.03□□□□□ -1.6
NKX3-1Q99801 OR1F12-201ENST00000402365 945 ntBASIC5.03□□□□□ -1.6
NKX3-1Q99801 BTBD9-203ENST00000403056 1155 ntTSL 5 BASIC5.03□□□□□ -1.6
NKX3-1Q99801 ARL4A-205ENST00000404894 840 ntAPPRIS P1 TSL 2 BASIC5.03□□□□□ -1.6
NKX3-1Q99801 AL139805.1-201ENST00000407837 289 ntBASIC5.03□□□□□ -1.6
NKX3-1Q99801 AL354890.1-201ENST00000413730 346 ntBASIC5.03□□□□□ -1.6
NKX3-1Q99801 LINC01980-201ENST00000414382 543 ntTSL 4 BASIC5.03□□□□□ -1.6
NKX3-1Q99801 LINC00701-201ENST00000418295 742 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
NKX3-1Q99801 RPS4XP5-201ENST00000419038 768 ntBASIC5.03□□□□□ -1.6
NKX3-1Q99801 CRIP1P1-201ENST00000427567 185 ntBASIC5.03□□□□□ -1.6
NKX3-1Q99801 AC012497.1-201ENST00000429392 575 ntBASIC5.03□□□□□ -1.6
NKX3-1Q99801 AL024474.2-201ENST00000431309 501 ntTSL 3 BASIC5.03□□□□□ -1.6
NKX3-1Q99801 AC007679.3-201ENST00000434035 414 ntBASIC5.03□□□□□ -1.6
NKX3-1Q99801 ZFAND6P1-201ENST00000434138 605 ntBASIC5.03□□□□□ -1.6
NKX3-1Q99801 AL445928.1-201ENST00000435545 222 ntBASIC5.03□□□□□ -1.6
NKX3-1Q99801 MTND2P40-201ENST00000436718 841 ntBASIC5.03□□□□□ -1.6
NKX3-1Q99801 AC007327.2-201ENST00000440788 457 ntTSL 3 BASIC5.03□□□□□ -1.6
NKX3-1Q99801 MORF4L1P4-201ENST00000450245 976 ntBASIC5.03□□□□□ -1.6
NKX3-1Q99801 AC104849.1-201ENST00000462623 405 ntBASIC5.03□□□□□ -1.6
NKX3-1Q99801 RN7SL269P-201ENST00000467795 305 ntBASIC5.03□□□□□ -1.6
NKX3-1Q99801 AC025181.1-201ENST00000477507 416 ntBASIC5.03□□□□□ -1.6
NKX3-1Q99801 PHC3-208ENST00000481639 1075 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
NKX3-1Q99801 AC080013.1-206ENST00000496842 712 ntTSL 2 BASIC5.03□□□□□ -1.6
NKX3-1Q99801 CCDC169-211ENST00000503173 837 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
NKX3-1Q99801 OR7E99P-201ENST00000505750 922 ntBASIC5.03□□□□□ -1.6
NKX3-1Q99801 AC091874.2-201ENST00000505889 720 ntBASIC5.03□□□□□ -1.6
NKX3-1Q99801 AL158068.1-201ENST00000506116 616 ntBASIC5.03□□□□□ -1.6
NKX3-1Q99801 AC006296.2-201ENST00000507932 764 ntTSL 3 BASIC5.03□□□□□ -1.6
NKX3-1Q99801 SPINK13-203ENST00000512953 1022 ntAPPRIS P2 TSL 2 BASIC5.03□□□□□ -1.6
NKX3-1Q99801 AC103726.2-201ENST00000523318 411 ntTSL 2 BASIC5.03□□□□□ -1.6
NKX3-1Q99801 AL133481.2-201ENST00000538322 367 ntTSL 2 BASIC5.03□□□□□ -1.6
NKX3-1Q99801 KLRK1-204ENST00000540818 951 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
NKX3-1Q99801 IFNG-AS1-203ENST00000541715 902 ntTSL 3 BASIC5.03□□□□□ -1.6
NKX3-1Q99801 OLR1-210ENST00000544577 924 ntTSL 5 BASIC5.03□□□□□ -1.6
NKX3-1Q99801 MED21-206ENST00000546323 575 ntTSL 3 BASIC5.03□□□□□ -1.6
NKX3-1Q99801 AL355112.1-201ENST00000550309 1236 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
NKX3-1Q99801 AL133371.1-201ENST00000555481 764 ntTSL 2 BASIC5.03□□□□□ -1.6
NKX3-1Q99801 WDR61-205ENST00000558459 884 ntTSL 3 BASIC5.03□□□□□ -1.6
NKX3-1Q99801 AC073941.1-201ENST00000559148 539 ntTSL 4 BASIC5.03□□□□□ -1.6
NKX3-1Q99801 AC012414.2-201ENST00000559474 187 ntBASIC5.03□□□□□ -1.6
NKX3-1Q99801 AC010325.1-202ENST00000562076 279 ntAPPRIS ALT2 TSL 1 (best) BASIC5.03□□□□□ -1.6
NKX3-1Q99801 SPINK14-202ENST00000562793 157 ntTSL 5 BASIC5.03□□□□□ -1.6
NKX3-1Q99801 AC100821.2-201ENST00000565668 440 ntTSL 2 BASIC5.03□□□□□ -1.6
NKX3-1Q99801 AC002519.2-203ENST00000567043 837 ntBASIC5.03□□□□□ -1.6
NKX3-1Q99801 AC090617.5-201ENST00000571815 528 ntTSL 3 BASIC5.03□□□□□ -1.6
NKX3-1Q99801 AP001011.1-201ENST00000583546 690 ntTSL 3 BASIC5.03□□□□□ -1.6
NKX3-1Q99801 CBLN2-208ENST00000584764 543 ntTSL 4 BASIC5.03□□□□□ -1.6
NKX3-1Q99801 AC090227.1-201ENST00000590532 936 ntAPPRIS P1 TSL 5 BASIC5.03□□□□□ -1.6
NKX3-1Q99801 CT45A1-202ENST00000594565 1007 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
NKX3-1Q99801 AC012370.2-201ENST00000597541 1080 ntTSL 5 BASIC5.03□□□□□ -1.6
NKX3-1Q99801 ZNF738-205ENST00000597810 747 ntAPPRIS ALT2 TSL 3 BASIC5.03□□□□□ -1.6
NKX3-1Q99801 AC003682.1-201ENST00000599190 462 ntTSL 2 BASIC5.03□□□□□ -1.6
NKX3-1Q99801 AC009032.1-201ENST00000617574 431 ntBASIC5.03□□□□□ -1.6
NKX3-1Q99801 AC079776.5-201ENST00000641920 211 ntBASIC5.03□□□□□ -1.6
NKX3-1Q99801 LINC01179-201ENST00000507838 2163 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
NKX3-1Q99801 DDX4-211ENST00000511853 1984 ntTSL 2 BASIC5.03□□□□□ -1.6
NKX3-1Q99801 AC123767.1-201ENST00000519537 1439 ntTSL 5 BASIC5.03□□□□□ -1.6
NKX3-1Q99801 SMG1-201ENST00000330588 1588 ntTSL 5 BASIC5.03□□□□□ -1.6
NKX3-1Q99801 GLIPR1L2-202ENST00000378692 1903 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
NKX3-1Q99801 RSU1P2-203ENST00000448600 1582 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
NKX3-1Q99801 RFC1-202ENST00000381897 4886 ntAPPRIS ALT2 TSL 1 (best) BASIC5.03□□□□□ -1.6
NKX3-1Q99801 AC008627.1-201ENST00000517511 1704 ntBASIC5.03□□□□□ -1.6
NKX3-1Q99801 FAM170B-AS1-203ENST00000442525 2000 ntTSL 2 BASIC5.02□□□□□ -1.61
NKX3-1Q99801 NAMPTP1-201ENST00000440465 2514 ntBASIC5.02□□□□□ -1.61
NKX3-1Q99801 GNRHR-201ENST00000226413 2164 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
NKX3-1Q99801 ASXL3-201ENST00000269197 11399 ntAPPRIS P2 TSL 5 BASIC5.02□□□□□ -1.61
NKX3-1Q99801 ELAVL4-205ENST00000371824 3966 ntAPPRIS P5 TSL 1 (best) BASIC5.02□□□□□ -1.61
NKX3-1Q99801 DYNC1I2-225ENST00000508530 2494 ntAPPRIS ALT1 TSL 1 (best) BASIC5.02□□□□□ -1.61
NKX3-1Q99801 AC104966.1-201ENST00000467010 1464 ntBASIC5.02□□□□□ -1.61
NKX3-1Q99801 SEMA6D-210ENST00000558816 4419 ntTSL 5 BASIC5.02□□□□□ -1.61
NKX3-1Q99801 ADAM20-201ENST00000256389 2795 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
NKX3-1Q99801 GPR89A-213ENST00000534502 1644 ntTSL 2 BASIC5.02□□□□□ -1.61
NKX3-1Q99801 AC138409.2-201ENST00000514048 5001 ntTSL 5 BASIC5.02□□□□□ -1.61
NKX3-1Q99801 CTAGE5-207ENST00000396165 3071 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
NKX3-1Q99801 SYCP2L-207ENST00000543878 2436 ntAPPRIS ALT2 TSL 5 BASIC5.02□□□□□ -1.61
NKX3-1Q99801 P2RY14-202ENST00000424796 1780 ntAPPRIS P1 TSL 2 BASIC5.02□□□□□ -1.61
NKX3-1Q99801 ALCAM-205ENST00000472644 4189 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
NKX3-1Q99801 ALKBH3-AS1-201ENST00000499194 1906 ntTSL 2 BASIC5.02□□□□□ -1.61
NKX3-1Q99801 DYDC1-202ENST00000372204 750 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
NKX3-1Q99801 TRBV23-1-201ENST00000390396 347 ntAPPRIS P1 BASIC5.02□□□□□ -1.61
NKX3-1Q99801 SNORA40.4-201ENST00000390971 128 ntBASIC5.02□□□□□ -1.61
NKX3-1Q99801 AL358178.1-201ENST00000407698 397 ntBASIC5.02□□□□□ -1.61
NKX3-1Q99801 GLS-203ENST00000409215 632 ntTSL 4 BASIC5.02□□□□□ -1.61
NKX3-1Q99801 SVIL-AS1-202ENST00000414457 1243 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
NKX3-1Q99801 VN1R31P-201ENST00000417498 730 ntBASIC5.02□□□□□ -1.61
NKX3-1Q99801 ARAFP1-201ENST00000422172 605 ntBASIC5.02□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 427.3 ms