Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 RAB30-214ENST00000534141 3746 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
PDLIM3Q53GG5 RGSL1-201ENST00000294854 3696 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
PDLIM3Q53GG5 ADAM29-203ENST00000445694 3244 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
PDLIM3Q53GG5 AL080276.2-201ENST00000637995 2090 ntTSL 3 BASIC5.09□□□□□ -1.59
PDLIM3Q53GG5 DSE-204ENST00000452085 10586 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.6
PDLIM3Q53GG5 DCAF8L1-201ENST00000441525 3457 ntAPPRIS P1 BASIC5.09□□□□□ -1.6
PDLIM3Q53GG5 SDAD1-203ENST00000395711 2513 ntTSL 2 BASIC5.08□□□□□ -1.6
PDLIM3Q53GG5 NR3C2-202ENST00000344721 5712 ntAPPRIS P1 TSL 5 BASIC5.08□□□□□ -1.6
PDLIM3Q53GG5 CASC15-207ENST00000607048 1634 ntTSL 2 BASIC5.08□□□□□ -1.6
PDLIM3Q53GG5 AC091305.2-201ENST00000624049 1576 ntBASIC5.08□□□□□ -1.6
PDLIM3Q53GG5 TXNRD1-212ENST00000526390 3808 ntTSL 5 BASIC5.08□□□□□ -1.6
PDLIM3Q53GG5 MSL2-202ENST00000434835 2272 ntTSL 2 BASIC5.08□□□□□ -1.6
PDLIM3Q53GG5 CPED1-203ENST00000423795 2189 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
PDLIM3Q53GG5 CAPN6-201ENST00000324068 3568 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
PDLIM3Q53GG5 SMG1P5-202ENST00000529428 4219 ntBASIC5.08□□□□□ -1.6
PDLIM3Q53GG5 SMG1P2-201ENST00000566127 4221 ntBASIC5.08□□□□□ -1.6
PDLIM3Q53GG5 ZNF215-205ENST00000529903 1396 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
PDLIM3Q53GG5 OR11H1-201ENST00000252835 982 ntAPPRIS P1 BASIC5.08□□□□□ -1.6
PDLIM3Q53GG5 RPL11P4-201ENST00000332269 436 ntBASIC5.08□□□□□ -1.6
PDLIM3Q53GG5 NPM1-202ENST00000351986 1237 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
PDLIM3Q53GG5 SNORD16-201ENST00000362803 99 ntBASIC5.08□□□□□ -1.6
PDLIM3Q53GG5 ARV1-202ENST00000366658 1170 ntTSL 5 BASIC5.08□□□□□ -1.6
PDLIM3Q53GG5 MRRF-203ENST00000373723 1176 ntTSL 3 BASIC5.08□□□□□ -1.6
PDLIM3Q53GG5 OR13C3-201ENST00000374781 1108 ntBASIC5.08□□□□□ -1.6
PDLIM3Q53GG5 MIR433-201ENST00000384837 93 ntBASIC5.08□□□□□ -1.6
PDLIM3Q53GG5 AP000534.2-201ENST00000412729 568 ntBASIC5.08□□□□□ -1.6
PDLIM3Q53GG5 AC079630.1-201ENST00000412812 585 ntTSL 4 BASIC5.08□□□□□ -1.6
PDLIM3Q53GG5 PSMA3-202ENST00000412908 908 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
PDLIM3Q53GG5 AL121776.1-201ENST00000429337 372 ntBASIC5.08□□□□□ -1.6
PDLIM3Q53GG5 HNRNPA1P18-201ENST00000433537 927 ntBASIC5.08□□□□□ -1.6
PDLIM3Q53GG5 SLC8A1-AS1-205ENST00000435515 497 ntTSL 3 BASIC5.08□□□□□ -1.6
PDLIM3Q53GG5 MTND4P15-201ENST00000437913 1033 ntBASIC5.08□□□□□ -1.6
PDLIM3Q53GG5 AL606534.1-201ENST00000439562 694 ntTSL 3 BASIC5.08□□□□□ -1.6
PDLIM3Q53GG5 RPL6P30-201ENST00000443382 862 ntBASIC5.08□□□□□ -1.6
PDLIM3Q53GG5 H2AFZP6-201ENST00000444403 394 ntBASIC5.08□□□□□ -1.6
PDLIM3Q53GG5 AL445238.1-201ENST00000450029 712 ntTSL 2 BASIC5.08□□□□□ -1.6
PDLIM3Q53GG5 AC073636.1-202ENST00000457756 558 ntTSL 4 BASIC5.08□□□□□ -1.6
PDLIM3Q53GG5 AC104233.1-201ENST00000458107 339 ntTSL 5 BASIC5.08□□□□□ -1.6
PDLIM3Q53GG5 AL445687.2-201ENST00000458156 728 ntBASIC5.08□□□□□ -1.6
PDLIM3Q53GG5 AC023141.9-201ENST00000458734 412 ntBASIC5.08□□□□□ -1.6
PDLIM3Q53GG5 AC109992.2-201ENST00000460977 765 ntTSL 3 BASIC5.08□□□□□ -1.6
PDLIM3Q53GG5 PEX5L-AS1-201ENST00000466064 827 ntTSL 2 BASIC5.08□□□□□ -1.6
PDLIM3Q53GG5 AP002453.1-201ENST00000492327 668 ntBASIC5.08□□□□□ -1.6
PDLIM3Q53GG5 AL136038.1-201ENST00000497246 351 ntBASIC5.08□□□□□ -1.6
PDLIM3Q53GG5 LINC01596-201ENST00000503609 592 ntTSL 2 BASIC5.08□□□□□ -1.6
PDLIM3Q53GG5 AC023794.2-201ENST00000504891 528 ntTSL 3 BASIC5.08□□□□□ -1.6
PDLIM3Q53GG5 AC116634.1-201ENST00000506926 447 ntTSL 5 BASIC5.08□□□□□ -1.6
PDLIM3Q53GG5 ATG10-208ENST00000513634 618 ntTSL 2 BASIC5.08□□□□□ -1.6
PDLIM3Q53GG5 RNA5SP400-201ENST00000517155 111 ntBASIC5.08□□□□□ -1.6
PDLIM3Q53GG5 AC018442.2-201ENST00000523658 648 ntTSL 3 BASIC5.08□□□□□ -1.6
PDLIM3Q53GG5 ARL6IP1P3-201ENST00000524544 560 ntBASIC5.08□□□□□ -1.6
PDLIM3Q53GG5 OR4V1P-201ENST00000525394 1140 ntBASIC5.08□□□□□ -1.6
PDLIM3Q53GG5 AP003086.3-201ENST00000527030 365 ntTSL 3 BASIC5.08□□□□□ -1.6
PDLIM3Q53GG5 AP001001.1-202ENST00000527594 692 ntTSL 3 BASIC5.08□□□□□ -1.6
PDLIM3Q53GG5 EIF4A2P5-201ENST00000529914 499 ntBASIC5.08□□□□□ -1.6
PDLIM3Q53GG5 AL132800.1-201ENST00000555109 698 ntTSL 5 BASIC5.08□□□□□ -1.6
PDLIM3Q53GG5 AC009396.2-201ENST00000555954 700 ntTSL 3 BASIC5.08□□□□□ -1.6
PDLIM3Q53GG5 OR11H2-201ENST00000556246 948 ntAPPRIS P1 BASIC5.08□□□□□ -1.6
PDLIM3Q53GG5 AC026956.1-201ENST00000558741 396 ntBASIC5.08□□□□□ -1.6
PDLIM3Q53GG5 AC007601.2-201ENST00000566957 502 ntTSL 3 BASIC5.08□□□□□ -1.6
PDLIM3Q53GG5 SETSIP-202ENST00000596516 909 ntAPPRIS P2 BASIC5.08□□□□□ -1.6
PDLIM3Q53GG5 ZNF649-AS1-201ENST00000600329 579 ntTSL 4 BASIC5.08□□□□□ -1.6
PDLIM3Q53GG5 AC004805.3-201ENST00000603178 310 ntBASIC5.08□□□□□ -1.6
PDLIM3Q53GG5 SNORD96A-201ENST00000606577 79 ntBASIC5.08□□□□□ -1.6
PDLIM3Q53GG5 AL136370.1-201ENST00000608166 691 ntBASIC5.08□□□□□ -1.6
PDLIM3Q53GG5 AP005431.1-201ENST00000618479 319 ntBASIC5.08□□□□□ -1.6
PDLIM3Q53GG5 AC003992.1-201ENST00000635364 557 ntBASIC5.08□□□□□ -1.6
PDLIM3Q53GG5 LINC02341-202ENST00000637462 1295 ntTSL 5 BASIC5.08□□□□□ -1.6
PDLIM3Q53GG5 OR13C3-202ENST00000641090 1108 ntAPPRIS P1 BASIC5.08□□□□□ -1.6
PDLIM3Q53GG5 AC006484.1-201ENST00000435086 1884 ntBASIC5.08□□□□□ -1.6
PDLIM3Q53GG5 ZNF33A-202ENST00000374618 6122 ntTSL 4 BASIC5.08□□□□□ -1.6
PDLIM3Q53GG5 NCOA1-206ENST00000407230 4745 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
PDLIM3Q53GG5 VPS13C-204ENST00000395898 11012 ntAPPRIS ALT2 TSL 1 (best) BASIC5.08□□□□□ -1.6
PDLIM3Q53GG5 EXPH5-201ENST00000265843 10187 ntAPPRIS P3 TSL 1 (best) BASIC5.08□□□□□ -1.6
PDLIM3Q53GG5 GAS2L3-203ENST00000539410 2229 ntAPPRIS P1 TSL 2 BASIC5.08□□□□□ -1.6
PDLIM3Q53GG5 OAZ3-204ENST00000479764 3789 ntTSL 5 BASIC5.08□□□□□ -1.6
PDLIM3Q53GG5 KANTR-203ENST00000604062 4251 ntAPPRIS P1 TSL 5 BASIC5.08□□□□□ -1.6
PDLIM3Q53GG5 SETDB2-201ENST00000258672 2138 ntTSL 5 BASIC5.08□□□□□ -1.6
PDLIM3Q53GG5 AL034546.1-201ENST00000623740 3693 ntBASIC5.08□□□□□ -1.6
PDLIM3Q53GG5 FCGR1B-209ENST00000616817 1584 ntAPPRIS ALT2 TSL 5 BASIC5.08□□□□□ -1.6
PDLIM3Q53GG5 RALGAPA1-202ENST00000382366 6328 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
PDLIM3Q53GG5 ZNF493-202ENST00000355504 4386 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
PDLIM3Q53GG5 SPATA17-201ENST00000366933 5818 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
PDLIM3Q53GG5 SLC16A6-201ENST00000327268 3807 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
PDLIM3Q53GG5 RBPJP7-201ENST00000442803 1447 ntBASIC5.07□□□□□ -1.6
PDLIM3Q53GG5 RBPJP5-201ENST00000449433 1447 ntBASIC5.07□□□□□ -1.6
PDLIM3Q53GG5 VEPH1-205ENST00000468233 1401 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
PDLIM3Q53GG5 AC079915.1-201ENST00000584382 2780 ntTSL 2 BASIC5.07□□□□□ -1.6
PDLIM3Q53GG5 AL353796.1-201ENST00000561542 3241 ntBASIC5.07□□□□□ -1.6
PDLIM3Q53GG5 DPP8-203ENST00000341861 8699 ntAPPRIS P4 TSL 2 BASIC5.07□□□□□ -1.6
PDLIM3Q53GG5 ZNF311-203ENST00000377179 2730 ntAPPRIS P1 TSL 5 BASIC5.07□□□□□ -1.6
PDLIM3Q53GG5 AL359976.1-201ENST00000418655 3528 ntBASIC5.07□□□□□ -1.6
PDLIM3Q53GG5 NRCAM-210ENST00000425651 3915 ntAPPRIS ALT2 TSL 1 (best) BASIC5.07□□□□□ -1.6
PDLIM3Q53GG5 AC009804.2-201ENST00000637566 3032 ntTSL 5 BASIC5.07□□□□□ -1.6
PDLIM3Q53GG5 PSMA6-201ENST00000261479 1029 ntAPPRIS P2 TSL 1 (best) BASIC5.07□□□□□ -1.6
PDLIM3Q53GG5 RNASE6-201ENST00000304677 1061 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
PDLIM3Q53GG5 RNF19BPX-201ENST00000426224 625 ntBASIC5.07□□□□□ -1.6
PDLIM3Q53GG5 NPM1P26-201ENST00000426339 738 ntBASIC5.07□□□□□ -1.6
PDLIM3Q53GG5 AL513323.1-201ENST00000431862 1063 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
PDLIM3Q53GG5 MTUS2-AS2-202ENST00000434779 720 ntTSL 3 BASIC5.07□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 103.7 ms