Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 AC139720.1-201ENST00000509497 512 ntTSL 3 BASIC6.07□□□□□ -1.44
MSX2P35548 AC097535.1-201ENST00000515263 332 ntTSL 3 BASIC6.07□□□□□ -1.44
MSX2P35548 AC010442.1-201ENST00000515583 816 ntBASIC6.07□□□□□ -1.44
MSX2P35548 AC067904.2-201ENST00000517322 1283 ntBASIC6.07□□□□□ -1.44
MSX2P35548 AC008429.2-201ENST00000523057 864 ntBASIC6.07□□□□□ -1.44
MSX2P35548 MTND2P26-201ENST00000528255 1029 ntBASIC6.07□□□□□ -1.44
MSX2P35548 C11orf74-210ENST00000534635 801 ntAPPRIS ALT2 TSL 2 BASIC6.07□□□□□ -1.44
MSX2P35548 RFPL1S-203ENST00000539579 330 ntBASIC6.07□□□□□ -1.44
MSX2P35548 TAT-AS1-201ENST00000561529 873 ntTSL 5 BASIC6.07□□□□□ -1.44
MSX2P35548 AP005131.3-201ENST00000590042 665 ntTSL 3 BASIC6.07□□□□□ -1.44
MSX2P35548 AC243960.3-202ENST00000599770 594 ntTSL 4 BASIC6.07□□□□□ -1.44
MSX2P35548 ZNF649-AS1-201ENST00000600329 579 ntTSL 4 BASIC6.07□□□□□ -1.44
MSX2P35548 AL031429.2-201ENST00000602605 649 ntBASIC6.07□□□□□ -1.44
MSX2P35548 COX6CP16-201ENST00000603667 216 ntBASIC6.07□□□□□ -1.44
MSX2P35548 AL021368.3-201ENST00000607119 578 ntBASIC6.07□□□□□ -1.44
MSX2P35548 AC012510.1-201ENST00000607946 759 ntBASIC6.07□□□□□ -1.44
MSX2P35548 AL352984.2-201ENST00000611153 546 ntBASIC6.07□□□□□ -1.44
MSX2P35548 AL671511.2-201ENST00000611838 659 ntTSL 2 BASIC6.07□□□□□ -1.44
MSX2P35548 DPY19L1-208ENST00000612226 607 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
MSX2P35548 AC123767.1-202ENST00000620407 817 ntBASIC6.07□□□□□ -1.44
MSX2P35548 KBTBD2-208ENST00000621876 1196 ntTSL 5 BASIC6.07□□□□□ -1.44
MSX2P35548 ATXN3L-202ENST00000622204 837 ntTSL 5 BASIC6.07□□□□□ -1.44
MSX2P35548 AL139220.2-223ENST00000625982 921 ntTSL 5 BASIC6.07□□□□□ -1.44
MSX2P35548 UGP2-231ENST00000627474 264 ntTSL 5 BASIC6.07□□□□□ -1.44
MSX2P35548 PKIA-AS1-202ENST00000522302 2011 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
MSX2P35548 GUCY1B2-204ENST00000531898 1979 ntBASIC6.07□□□□□ -1.44
MSX2P35548 MAGI2-222ENST00000636039 5671 ntTSL 5 BASIC6.07□□□□□ -1.44
MSX2P35548 BLM-201ENST00000355112 5258 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
MSX2P35548 NFIB-204ENST00000380953 2381 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
MSX2P35548 AC125238.2-201ENST00000430003 1440 ntBASIC6.07□□□□□ -1.44
MSX2P35548 SAGE3P-201ENST00000619800 1635 ntBASIC6.07□□□□□ -1.44
MSX2P35548 AL365214.2-201ENST00000433684 1365 ntTSL 2 BASIC6.06□□□□□ -1.44
MSX2P35548 PHC3-214ENST00000494943 5030 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
MSX2P35548 IKZF3-210ENST00000377958 1837 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
MSX2P35548 SLC1A2-202ENST00000395750 11538 ntAPPRIS ALT1 TSL 1 (best) BASIC6.06□□□□□ -1.44
MSX2P35548 EXD1-201ENST00000314992 2942 ntAPPRIS P3 TSL 1 (best) BASIC6.06□□□□□ -1.44
MSX2P35548 NCOA7-208ENST00000438495 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC6.06□□□□□ -1.44
MSX2P35548 SPANXN5-201ENST00000375511 1316 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
MSX2P35548 ZNF736P9Y-201ENST00000439586 1345 ntBASIC6.06□□□□□ -1.44
MSX2P35548 ZNF329-201ENST00000358067 3290 ntAPPRIS P1 TSL 2 BASIC6.06□□□□□ -1.44
MSX2P35548 ROR1-AS1-202ENST00000424995 2189 ntTSL 2 BASIC6.06□□□□□ -1.44
MSX2P35548 UGT2A1-206ENST00000514019 2376 ntTSL 2 BASIC6.06□□□□□ -1.44
MSX2P35548 HAVCR1-204ENST00000522693 1713 ntAPPRIS ALT2 TSL 2 BASIC6.06□□□□□ -1.44
MSX2P35548 ZNF605-204ENST00000392321 6156 ntAPPRIS ALT2 TSL 2 BASIC6.06□□□□□ -1.44
MSX2P35548 MTHFD2P5-201ENST00000320415 844 ntBASIC6.06□□□□□ -1.44
MSX2P35548 TMEM202-201ENST00000341689 1012 ntAPPRIS P2 TSL 5 BASIC6.06□□□□□ -1.44
MSX2P35548 AL121835.1-201ENST00000404250 354 ntBASIC6.06□□□□□ -1.44
MSX2P35548 RPSAP44-201ENST00000406712 884 ntBASIC6.06□□□□□ -1.44
MSX2P35548 SERHL2-204ENST00000407614 521 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
MSX2P35548 AL365356.1-201ENST00000411512 736 ntTSL 3 BASIC6.06□□□□□ -1.44
MSX2P35548 TATDN1P1-201ENST00000414123 891 ntBASIC6.06□□□□□ -1.44
MSX2P35548 AC021876.1-201ENST00000425959 359 ntBASIC6.06□□□□□ -1.44
MSX2P35548 AC234781.2-201ENST00000426370 994 ntBASIC6.06□□□□□ -1.44
MSX2P35548 RPS10P21-201ENST00000430654 475 ntBASIC6.06□□□□□ -1.44
MSX2P35548 AL049594.1-201ENST00000432834 805 ntTSL 3 BASIC6.06□□□□□ -1.44
MSX2P35548 TRIM60P9Y-201ENST00000438459 816 ntBASIC6.06□□□□□ -1.44
MSX2P35548 NPM1P23-201ENST00000440193 849 ntBASIC6.06□□□□□ -1.44
MSX2P35548 OR13K1P-201ENST00000444577 975 ntBASIC6.06□□□□□ -1.44
MSX2P35548 EEF1B2P5-201ENST00000444820 548 ntBASIC6.06□□□□□ -1.44
MSX2P35548 TRIM60P11Y-201ENST00000445313 801 ntBASIC6.06□□□□□ -1.44
MSX2P35548 RPL6P5-201ENST00000445678 828 ntBASIC6.06□□□□□ -1.44
MSX2P35548 MTND6P5-201ENST00000448266 512 ntBASIC6.06□□□□□ -1.44
MSX2P35548 OR7E7P-201ENST00000455678 1012 ntBASIC6.06□□□□□ -1.44
MSX2P35548 snoU13.29-201ENST00000459370 104 ntBASIC6.06□□□□□ -1.44
MSX2P35548 LINC02339-201ENST00000472649 752 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
MSX2P35548 AC099340.1-201ENST00000475247 599 ntBASIC6.06□□□□□ -1.44
MSX2P35548 AL928654.1-201ENST00000476081 354 ntBASIC6.06□□□□□ -1.44
MSX2P35548 RPS3AP43-201ENST00000479743 781 ntBASIC6.06□□□□□ -1.44
MSX2P35548 PHC3-208ENST00000481639 1075 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
MSX2P35548 MTERF4-220ENST00000495694 909 ntTSL 5 BASIC6.06□□□□□ -1.44
MSX2P35548 NADK2-AS1-201ENST00000501794 720 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
MSX2P35548 AC026414.1-201ENST00000504046 698 ntBASIC6.06□□□□□ -1.44
MSX2P35548 AC091951.3-201ENST00000504093 246 ntBASIC6.06□□□□□ -1.44
MSX2P35548 LINC02173-201ENST00000504132 521 ntTSL 2 BASIC6.06□□□□□ -1.44
MSX2P35548 AL049544.1-201ENST00000511849 673 ntTSL 3 BASIC6.06□□□□□ -1.44
MSX2P35548 LINC02482-202ENST00000515205 422 ntTSL 2 BASIC6.06□□□□□ -1.44
MSX2P35548 TATDN1-202ENST00000517678 815 ntTSL 3 BASIC6.06□□□□□ -1.44
MSX2P35548 TATDN1-206ENST00000519548 889 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
MSX2P35548 LRRTM2-203ENST00000521094 1182 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
MSX2P35548 AC107952.1-201ENST00000524200 376 ntBASIC6.06□□□□□ -1.44
MSX2P35548 AP001831.1-201ENST00000524610 411 ntTSL 3 BASIC6.06□□□□□ -1.44
MSX2P35548 AC079064.1-201ENST00000528365 362 ntBASIC6.06□□□□□ -1.44
MSX2P35548 NDUFA3P2-201ENST00000531434 232 ntBASIC6.06□□□□□ -1.44
MSX2P35548 AC124891.1-201ENST00000536322 519 ntBASIC6.06□□□□□ -1.44
MSX2P35548 PCED1B-AS1-202ENST00000547600 523 ntTSL 3 BASIC6.06□□□□□ -1.44
MSX2P35548 LINC02327-205ENST00000550990 472 ntTSL 3 BASIC6.06□□□□□ -1.44
MSX2P35548 PCED1B-AS1-207ENST00000551432 522 ntTSL 5 BASIC6.06□□□□□ -1.44
MSX2P35548 AC103740.1-202ENST00000558404 542 ntTSL 4 BASIC6.06□□□□□ -1.44
MSX2P35548 AC090651.1-201ENST00000567865 634 ntBASIC6.06□□□□□ -1.44
MSX2P35548 ANP32BP1-202ENST00000568553 737 ntBASIC6.06□□□□□ -1.44
MSX2P35548 MIR3189-201ENST00000578735 73 ntBASIC6.06□□□□□ -1.44
MSX2P35548 AC087399.1-201ENST00000579769 573 ntTSL 4 BASIC6.06□□□□□ -1.44
MSX2P35548 AC103808.1-201ENST00000579833 922 ntTSL 3 BASIC6.06□□□□□ -1.44
MSX2P35548 AC069366.1-201ENST00000583159 838 ntBASIC6.06□□□□□ -1.44
MSX2P35548 AC119868.1-202ENST00000584741 347 ntTSL 2 BASIC6.06□□□□□ -1.44
MSX2P35548 ZNF235-204ENST00000589799 955 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
MSX2P35548 ZNF431-203ENST00000594425 610 ntTSL 2 BASIC6.06□□□□□ -1.44
MSX2P35548 AC005154.6-201ENST00000598361 687 ntAPPRIS P1 TSL 5 BASIC6.06□□□□□ -1.44
MSX2P35548 ZNF675-204ENST00000599168 592 ntTSL 2 BASIC6.06□□□□□ -1.44
MSX2P35548 AC010245.2-201ENST00000606908 1167 ntBASIC6.06□□□□□ -1.44
Retrieved 100 of 98,524 protein–RNA pairs in 84.4 ms